data_4LND # _model_server_result.job_id DxSIJ4dsjaTypxVu77x3Wg _model_server_result.datetime_utc '2024-10-22 03:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lnd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4LND # _exptl.entry_id 4LND _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 123.22 _cell.angle_gamma 90 _cell.entry_id 4LND _cell.length_a 165.795 _cell.length_b 90.94 _cell.length_c 94.03 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LND _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,G 1 1 B,E,H 2 1 C,F,I 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 38 A ASP 70 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc2 A OE1 GLU 64 A GLU 96 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc3 D MG MG . A MG 401 1_555 G O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc4 D MG MG . A MG 401 1_555 G O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc5 D MG MG . A MG 401 1_555 G O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc6 D MG MG . A MG 401 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc7 B OD1 ASP 38 B ASP 70 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc8 B OE1 GLU 64 B GLU 96 1_555 E MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.983 ? metalc ? metalc9 E MG MG . B MG 401 1_555 H O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc10 E MG MG . B MG 401 1_555 H O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc11 E MG MG . B MG 401 1_555 H O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc12 E MG MG . B MG 401 1_555 H O HOH . B HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc13 C OD1 ASP 38 C ASP 70 1_555 F MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc14 C OE1 GLU 64 C GLU 96 1_555 F MG MG . C MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.92 ? metalc ? metalc15 F MG MG . C MG 401 1_555 I O HOH . C HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc16 F MG MG . C MG 401 1_555 I O HOH . C HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc17 F MG MG . C MG 401 1_555 I O HOH . C HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc18 F MG MG . C MG 401 1_555 I O HOH . C HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LND _atom_sites.fract_transf_matrix[1][1] 0.006032 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00395 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010996 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 MG A 1 401 401 MG MG . E 2 MG B 1 401 401 MG MG . F 2 MG C 1 401 401 MG MG . G 3 HOH A 1 501 1 HOH HOH . G 3 HOH A 2 502 2 HOH HOH . G 3 HOH A 3 503 3 HOH HOH . G 3 HOH A 4 504 4 HOH HOH . G 3 HOH A 5 505 3 HOH HOH . G 3 HOH A 6 506 6 HOH HOH . G 3 HOH A 7 507 7 HOH HOH . G 3 HOH A 8 508 13 HOH HOH . G 3 HOH A 9 509 15 HOH HOH . G 3 HOH A 10 510 17 HOH HOH . G 3 HOH A 11 511 21 HOH HOH . G 3 HOH A 12 512 23 HOH HOH . G 3 HOH A 13 513 26 HOH HOH . G 3 HOH A 14 514 30 HOH HOH . G 3 HOH A 15 515 32 HOH HOH . G 3 HOH A 16 516 33 HOH HOH . G 3 HOH A 17 517 34 HOH HOH . G 3 HOH A 18 518 36 HOH HOH . G 3 HOH A 19 519 38 HOH HOH . G 3 HOH A 20 520 40 HOH HOH . G 3 HOH A 21 521 42 HOH HOH . G 3 HOH A 22 522 43 HOH HOH . G 3 HOH A 23 523 44 HOH HOH . G 3 HOH A 24 524 46 HOH HOH . G 3 HOH A 25 525 48 HOH HOH . G 3 HOH A 26 526 50 HOH HOH . G 3 HOH A 27 527 51 HOH HOH . G 3 HOH A 28 528 55 HOH HOH . G 3 HOH A 29 529 56 HOH HOH . G 3 HOH A 30 530 57 HOH HOH . G 3 HOH A 31 531 60 HOH HOH . G 3 HOH A 32 532 61 HOH HOH . G 3 HOH A 33 533 62 HOH HOH . G 3 HOH A 34 534 64 HOH HOH . G 3 HOH A 35 535 65 HOH HOH . G 3 HOH A 36 536 66 HOH HOH . G 3 HOH A 37 537 68 HOH HOH . G 3 HOH A 38 538 71 HOH HOH . G 3 HOH A 39 539 72 HOH HOH . G 3 HOH A 40 540 73 HOH HOH . G 3 HOH A 41 541 74 HOH HOH . G 3 HOH A 42 542 80 HOH HOH . G 3 HOH A 43 543 82 HOH HOH . G 3 HOH A 44 544 94 HOH HOH . G 3 HOH A 45 545 97 HOH HOH . G 3 HOH A 46 546 98 HOH HOH . G 3 HOH A 47 547 99 HOH HOH . G 3 HOH A 48 548 100 HOH HOH . G 3 HOH A 49 549 103 HOH HOH . G 3 HOH A 50 550 106 HOH HOH . G 3 HOH A 51 551 107 HOH HOH . G 3 HOH A 52 552 108 HOH HOH . G 3 HOH A 53 553 109 HOH HOH . G 3 HOH A 54 554 110 HOH HOH . H 3 HOH B 1 501 1 HOH HOH . H 3 HOH B 2 502 2 HOH HOH . H 3 HOH B 3 503 3 HOH HOH . H 3 HOH B 4 504 4 HOH HOH . H 3 HOH B 5 505 2 HOH HOH . H 3 HOH B 6 506 4 HOH HOH . H 3 HOH B 7 507 5 HOH HOH . H 3 HOH B 8 508 8 HOH HOH . H 3 HOH B 9 509 9 HOH HOH . H 3 HOH B 10 510 11 HOH HOH . H 3 HOH B 11 511 16 HOH HOH . H 3 HOH B 12 512 18 HOH HOH . H 3 HOH B 13 513 20 HOH HOH . H 3 HOH B 14 514 22 HOH HOH . H 3 HOH B 15 515 25 HOH HOH . H 3 HOH B 16 516 27 HOH HOH . H 3 HOH B 17 517 29 HOH HOH . H 3 HOH B 18 518 31 HOH HOH . H 3 HOH B 19 519 35 HOH HOH . H 3 HOH B 20 520 37 HOH HOH . H 3 HOH B 21 521 39 HOH HOH . H 3 HOH B 22 522 45 HOH HOH . H 3 HOH B 23 523 47 HOH HOH . H 3 HOH B 24 524 49 HOH HOH . H 3 HOH B 25 525 52 HOH HOH . H 3 HOH B 26 526 53 HOH HOH . H 3 HOH B 27 527 58 HOH HOH . H 3 HOH B 28 528 59 HOH HOH . H 3 HOH B 29 529 67 HOH HOH . H 3 HOH B 30 530 69 HOH HOH . H 3 HOH B 31 531 75 HOH HOH . H 3 HOH B 32 532 76 HOH HOH . H 3 HOH B 33 533 77 HOH HOH . H 3 HOH B 34 534 78 HOH HOH . H 3 HOH B 35 535 81 HOH HOH . H 3 HOH B 36 536 83 HOH HOH . H 3 HOH B 37 537 84 HOH HOH . H 3 HOH B 38 538 85 HOH HOH . H 3 HOH B 39 539 86 HOH HOH . H 3 HOH B 40 540 87 HOH HOH . H 3 HOH B 41 541 88 HOH HOH . H 3 HOH B 42 542 90 HOH HOH . H 3 HOH B 43 543 91 HOH HOH . H 3 HOH B 44 544 95 HOH HOH . H 3 HOH B 45 545 101 HOH HOH . H 3 HOH B 46 546 102 HOH HOH . H 3 HOH B 47 547 105 HOH HOH . H 3 HOH B 48 548 111 HOH HOH . H 3 HOH B 49 549 112 HOH HOH . H 3 HOH B 50 550 113 HOH HOH . I 3 HOH C 1 501 1 HOH HOH . I 3 HOH C 2 502 2 HOH HOH . I 3 HOH C 3 503 3 HOH HOH . I 3 HOH C 4 504 4 HOH HOH . I 3 HOH C 5 505 1 HOH HOH . I 3 HOH C 6 506 10 HOH HOH . I 3 HOH C 7 507 12 HOH HOH . I 3 HOH C 8 508 14 HOH HOH . I 3 HOH C 9 509 28 HOH HOH . I 3 HOH C 10 510 54 HOH HOH . I 3 HOH C 11 511 63 HOH HOH . I 3 HOH C 12 512 70 HOH HOH . I 3 HOH C 13 513 89 HOH HOH . I 3 HOH C 14 514 92 HOH HOH . I 3 HOH C 15 515 96 HOH HOH . I 3 HOH C 16 516 104 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.132 _atom_site.Cartn_y -49.689 _atom_site.Cartn_z 61.369 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 35.63 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #