data_4LNH # _model_server_result.job_id jiNEUTpDmltLYWOvgV-Zdg _model_server_result.datetime_utc '2024-12-02 00:43:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lnh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4LNH # _exptl.entry_id 4LNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LNH _cell.length_a 164.732 _cell.length_b 164.732 _cell.length_c 58.168 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1,2,3,4,5,6 A,B,C,D 2 1,4 A,B,C,D 3 1,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 58.168 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1 0 0 0 -1 0 0 0 -1 0 0 58.168 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 58.168 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 22 A SER 0 1_555 A N MSE 23 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 23 A MSE 1 1_555 A N SER 24 A SER 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C LEU 55 A LEU 33 1_555 A N MSE 56 A MSE 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 56 A MSE 34 1_555 A N ASP 57 A ASP 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C SER 91 A SER 69 1_555 A N MSE 92 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale6 A C MSE 92 A MSE 70 1_555 A N ILE 93 A ILE 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C ALA 115 A ALA 93 1_555 A N MSE 116 A MSE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale8 A C MSE 116 A MSE 94 1_555 A N GLN 117 A GLN 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale9 A C ASP 201 A ASP 179 1_555 A N MSE 202 A MSE 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 A C MSE 202 A MSE 180 1_555 A N GLU 203 A GLU 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C ALA 245 A ALA 223 1_555 A N MSE 246 A MSE 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 A C MSE 246 A MSE 224 1_555 A N MSE 247 A MSE 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C MSE 247 A MSE 225 1_555 A N ASN 248 A ASN 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4LNH _atom_sites.fract_transf_matrix[1][1] 0.00607 _atom_sites.fract_transf_matrix[1][2] 0.003505 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 500 500 SO4 SO4 . C 3 GOL A 1 501 501 GOL GOL . D 4 HOH A 1 601 1 HOH HOH . D 4 HOH A 2 602 2 HOH HOH . D 4 HOH A 3 603 3 HOH HOH . D 4 HOH A 4 604 4 HOH HOH . D 4 HOH A 5 605 6 HOH HOH . D 4 HOH A 6 606 7 HOH HOH . D 4 HOH A 7 607 8 HOH HOH . D 4 HOH A 8 608 9 HOH HOH . D 4 HOH A 9 609 12 HOH HOH . D 4 HOH A 10 610 13 HOH HOH . D 4 HOH A 11 611 14 HOH HOH . D 4 HOH A 12 612 15 HOH HOH . D 4 HOH A 13 613 16 HOH HOH . D 4 HOH A 14 614 17 HOH HOH . D 4 HOH A 15 615 18 HOH HOH . D 4 HOH A 16 616 19 HOH HOH . D 4 HOH A 17 617 20 HOH HOH . D 4 HOH A 18 618 21 HOH HOH . D 4 HOH A 19 619 22 HOH HOH . D 4 HOH A 20 620 23 HOH HOH . D 4 HOH A 21 621 24 HOH HOH . D 4 HOH A 22 622 25 HOH HOH . D 4 HOH A 23 623 26 HOH HOH . D 4 HOH A 24 624 27 HOH HOH . D 4 HOH A 25 625 28 HOH HOH . D 4 HOH A 26 626 29 HOH HOH . D 4 HOH A 27 627 30 HOH HOH . D 4 HOH A 28 628 32 HOH HOH . D 4 HOH A 29 629 33 HOH HOH . D 4 HOH A 30 630 34 HOH HOH . D 4 HOH A 31 631 35 HOH HOH . D 4 HOH A 32 632 36 HOH HOH . D 4 HOH A 33 633 37 HOH HOH . D 4 HOH A 34 634 38 HOH HOH . D 4 HOH A 35 635 39 HOH HOH . D 4 HOH A 36 636 40 HOH HOH . D 4 HOH A 37 637 41 HOH HOH . D 4 HOH A 38 638 42 HOH HOH . D 4 HOH A 39 639 43 HOH HOH . D 4 HOH A 40 640 44 HOH HOH . D 4 HOH A 41 641 45 HOH HOH . D 4 HOH A 42 642 46 HOH HOH . D 4 HOH A 43 643 47 HOH HOH . D 4 HOH A 44 644 48 HOH HOH . D 4 HOH A 45 645 49 HOH HOH . D 4 HOH A 46 646 50 HOH HOH . D 4 HOH A 47 647 51 HOH HOH . D 4 HOH A 48 648 52 HOH HOH . D 4 HOH A 49 649 53 HOH HOH . D 4 HOH A 50 650 54 HOH HOH . D 4 HOH A 51 651 55 HOH HOH . D 4 HOH A 52 652 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 0.075 7.983 15.471 1 75.09 ? C1 GOL 501 A 1 HETATM 2 O O1 GOL . . . C 3 1.258 7.431 14.872 1 81.77 ? O1 GOL 501 A 1 HETATM 3 C C2 GOL . . . C 3 -0.74 6.805 15.974 1 83.44 ? C2 GOL 501 A 1 HETATM 4 O O2 GOL . . . C 3 -1.441 6.196 14.878 1 104.41 ? O2 GOL 501 A 1 HETATM 5 C C3 GOL . . . C 3 -1.765 7.208 17.014 1 70.93 ? C3 GOL 501 A 1 HETATM 6 O O3 GOL . . . C 3 -2.384 5.972 17.388 1 68.04 ? O3 GOL 501 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #