data_4LNK # _model_server_result.job_id F4Rcor-2GjukNqLckbMiOA _model_server_result.datetime_utc '2025-06-28 23:32:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lnk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":501}' # _entry.id 4LNK # _exptl.entry_id 4LNK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GLUTAMIC ACID' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LNK _cell.length_a 138.5 _cell.length_b 240.86 _cell.length_c 207.85 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LNK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 103.925 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 M N N ? 2 Q N N ? 2 U N N ? 2 Y N N ? 2 DA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 131 A GLU 132 1_555 I MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc2 A OE1 GLU 188 A GLU 189 1_555 J MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc3 A OE1 GLU 195 A GLU 196 1_555 J MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 A OE2 GLU 332 A GLU 333 1_555 I MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc5 G OE1 GLU . A GLU 501 1_555 J MG MG . A MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc6 B OE2 GLU 131 B GLU 132 1_555 P MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc7 B OE2 GLU 133 B GLU 134 1_555 O MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc8 B OE1 GLU 188 B GLU 189 1_555 O MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc9 B OE2 GLU 332 B GLU 333 1_555 P MG MG . B MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc10 M OE2 GLU . B GLU 501 1_555 O MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc11 C OE2 GLU 131 C GLU 132 1_555 T MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc12 C OE2 GLU 133 C GLU 134 1_555 S MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc13 C OE2 GLU 195 C GLU 196 1_555 S MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc14 C OE1 GLU 195 C GLU 196 1_555 S MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc15 C OE2 GLU 332 C GLU 333 1_555 T MG MG . C MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc16 Q OE2 GLU . C GLU 501 1_555 S MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? metalc ? metalc17 D OE1 GLU 131 D GLU 132 1_555 X MG MG . D MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc18 D OE2 GLU 131 D GLU 132 1_555 X MG MG . D MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc19 D OE2 GLU 133 D GLU 134 1_555 W MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc20 D OE2 GLU 188 D GLU 189 1_555 W MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc21 D OE2 GLU 195 D GLU 196 1_555 W MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc22 D OE1 GLU 195 D GLU 196 1_555 W MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc23 D OE2 GLU 332 D GLU 333 1_555 X MG MG . D MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.792 ? metalc ? metalc24 U OE2 GLU . D GLU 501 1_555 W MG MG . D MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc25 W MG MG . D MG 503 1_555 LA O HOH . E HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc26 X MG MG . D MG 504 1_555 LA O HOH . E HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.992 ? metalc ? metalc27 E OE2 GLU 131 E GLU 132 1_555 AA MG MG . E MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc28 E OE2 GLU 133 E GLU 134 1_555 BA MG MG . E MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc29 E OE1 GLU 188 E GLU 189 1_555 BA MG MG . E MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc30 E OE2 GLU 195 E GLU 196 1_555 BA MG MG . E MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.783 ? metalc ? metalc31 E OE2 GLU 332 E GLU 333 1_555 AA MG MG . E MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc32 Y OE2 GLU . E GLU 501 1_555 BA MG MG . E MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.93 ? metalc ? metalc33 AA MG MG . E MG 503 1_555 F OE1 GLU 64 F GLU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc34 F OE1 GLU 131 F GLU 132 1_555 FA MG MG . F MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc35 F OE2 GLU 131 F GLU 132 1_555 FA MG MG . F MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc36 F OE1 GLU 188 F GLU 189 1_555 GA MG MG . F MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc37 F OE2 GLU 195 F GLU 196 1_555 GA MG MG . F MG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc38 F OE2 GLU 332 F GLU 333 1_555 FA MG MG . F MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc39 F OE1 GLU 332 F GLU 333 1_555 FA MG MG . F MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id GLU _chem_comp.mon_nstd_flag y _chem_comp.name 'GLUTAMIC ACID' _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLU sing 146 n n N H GLU sing 147 n n N H2 GLU sing 148 n n CA C GLU sing 149 n n CA CB GLU sing 150 n n CA HA GLU sing 151 n n C O GLU doub 152 n n C OXT GLU sing 153 n n CB CG GLU sing 154 n n CB HB2 GLU sing 155 n n CB HB3 GLU sing 156 n n CG CD GLU sing 157 n n CG HG2 GLU sing 158 n n CG HG3 GLU sing 159 n n CD OE1 GLU doub 160 n n CD OE2 GLU sing 161 n n OE2 HE2 GLU sing 162 n n OXT HXT GLU sing 163 n n # _atom_sites.entry_id 4LNK _atom_sites.fract_transf_matrix[1][1] 0.00722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004811 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GLU A 1 501 927 GLU GLU . H 3 ADP A 1 502 730 ADP ADP . I 4 MG A 1 503 502 MG MG . J 4 MG A 1 504 508 MG MG . K 5 SO4 A 1 505 407 SO4 SO4 . L 5 SO4 A 1 506 408 SO4 SO4 . M 2 GLU B 1 501 127 GLU GLU . N 3 ADP B 1 502 731 ADP ADP . O 4 MG B 1 503 501 MG MG . P 4 MG B 1 504 503 MG MG . Q 2 GLU C 1 501 227 GLU GLU . R 3 ADP C 1 502 734 ADP ADP . S 4 MG C 1 503 504 MG MG . T 4 MG C 1 504 406 MG MG . U 2 GLU D 1 501 207 GLU GLU . V 3 ADP D 1 502 736 ADP ADP . W 4 MG D 1 503 505 MG MG . X 4 MG D 1 504 506 MG MG . Y 2 GLU E 1 501 924 GLU GLU . Z 3 ADP E 1 502 517 ADP ADP . AA 4 MG E 1 503 407 MG MG . BA 4 MG E 1 504 405 MG MG . CA 5 SO4 E 1 505 405 SO4 SO4 . DA 2 GLU F 1 501 527 GLU GLU . EA 3 ADP F 1 502 518 ADP ADP . FA 4 MG F 1 503 411 MG MG . GA 4 MG F 1 504 412 MG MG . HA 6 HOH A 1 601 6 HOH HOH . HA 6 HOH A 2 602 29 HOH HOH . HA 6 HOH A 3 603 31 HOH HOH . HA 6 HOH A 4 604 33 HOH HOH . HA 6 HOH A 5 605 40 HOH HOH . HA 6 HOH A 6 606 41 HOH HOH . HA 6 HOH A 7 607 44 HOH HOH . HA 6 HOH A 8 608 45 HOH HOH . HA 6 HOH A 9 609 51 HOH HOH . HA 6 HOH A 10 610 52 HOH HOH . HA 6 HOH A 11 611 53 HOH HOH . HA 6 HOH A 12 612 54 HOH HOH . IA 6 HOH B 1 601 4 HOH HOH . IA 6 HOH B 2 602 7 HOH HOH . IA 6 HOH B 3 603 21 HOH HOH . IA 6 HOH B 4 604 24 HOH HOH . IA 6 HOH B 5 605 26 HOH HOH . IA 6 HOH B 6 606 46 HOH HOH . IA 6 HOH B 7 607 47 HOH HOH . JA 6 HOH C 1 601 5 HOH HOH . JA 6 HOH C 2 602 10 HOH HOH . JA 6 HOH C 3 603 16 HOH HOH . JA 6 HOH C 4 604 37 HOH HOH . JA 6 HOH C 5 605 39 HOH HOH . JA 6 HOH C 6 606 56 HOH HOH . KA 6 HOH D 1 601 2 HOH HOH . KA 6 HOH D 2 602 8 HOH HOH . KA 6 HOH D 3 603 11 HOH HOH . KA 6 HOH D 4 604 12 HOH HOH . KA 6 HOH D 5 605 18 HOH HOH . KA 6 HOH D 6 606 28 HOH HOH . KA 6 HOH D 7 607 34 HOH HOH . KA 6 HOH D 8 608 36 HOH HOH . KA 6 HOH D 9 609 48 HOH HOH . KA 6 HOH D 10 610 55 HOH HOH . LA 6 HOH E 1 601 1 HOH HOH . LA 6 HOH E 2 602 13 HOH HOH . LA 6 HOH E 3 603 14 HOH HOH . LA 6 HOH E 4 604 17 HOH HOH . LA 6 HOH E 5 605 20 HOH HOH . LA 6 HOH E 6 606 23 HOH HOH . LA 6 HOH E 7 607 25 HOH HOH . LA 6 HOH E 8 608 27 HOH HOH . LA 6 HOH E 9 609 30 HOH HOH . LA 6 HOH E 10 610 32 HOH HOH . LA 6 HOH E 11 611 38 HOH HOH . MA 6 HOH F 1 601 3 HOH HOH . MA 6 HOH F 2 602 9 HOH HOH . MA 6 HOH F 3 603 15 HOH HOH . MA 6 HOH F 4 604 19 HOH HOH . MA 6 HOH F 5 605 22 HOH HOH . MA 6 HOH F 6 606 35 HOH HOH . MA 6 HOH F 7 607 42 HOH HOH . MA 6 HOH F 8 608 43 HOH HOH . MA 6 HOH F 9 609 49 HOH HOH . MA 6 HOH F 10 610 50 HOH HOH . MA 6 HOH F 11 611 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLU . . . Y 2 30.704 97.662 36.188 1 58.87 ? N GLU 501 E 1 HETATM 2 C CA GLU . . . Y 2 31.587 97.569 35.014 1 68.1 ? CA GLU 501 E 1 HETATM 3 C C GLU . . . Y 2 32.476 98.826 34.798 1 68.42 ? C GLU 501 E 1 HETATM 4 O O GLU . . . Y 2 32.003 99.967 34.816 1 63.86 ? O GLU 501 E 1 HETATM 5 C CB GLU . . . Y 2 30.779 97.217 33.74 1 61.3 ? CB GLU 501 E 1 HETATM 6 C CG GLU . . . Y 2 31.626 96.888 32.49 1 63.75 ? CG GLU 501 E 1 HETATM 7 C CD GLU . . . Y 2 32.307 95.515 32.541 1 64.85 ? CD GLU 501 E 1 HETATM 8 O OE1 GLU . . . Y 2 31.716 94.562 33.126 1 57.06 ? OE1 GLU 501 E 1 HETATM 9 O OE2 GLU . . . Y 2 33.439 95.419 31.989 1 62.91 ? OE2 GLU 501 E 1 HETATM 10 O OXT GLU . . . Y 2 33.699 98.737 34.605 1 68.12 ? OXT GLU 501 E 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 10 #