data_4LNM # _model_server_result.job_id v5vg6NoLj3hNrBSGXsLGEg _model_server_result.datetime_utc '2024-11-24 00:06:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lnm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":401}' # _entry.id 4LNM # _exptl.entry_id 4LNM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LNM _cell.length_a 77.2 _cell.length_b 101.05 _cell.length_c 176.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LNM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 88.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 197 A LYS 197 1_555 E C4A PLR . A PLR 403 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.51 ? covale ? covale2 C N PLG . A PLG 401 1_555 B NZ LYS 197 B LYS 197 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale3 C C4A PLG . A PLG 401 1_555 B NZ LYS 197 B LYS 197 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.13 ? covale ? covale4 E C4A PLR . A PLR 403 1_555 B NZ LYS 197 B LYS 197 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.557 ? metalc ? metalc1 A O THR 8 A THR 8 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc2 A O THR 10 A THR 10 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc3 A OG1 THR 10 A THR 10 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc4 A OG SER 97 A SER 97 1_555 F CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc5 A O SER 196 A SER 196 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? metalc ? metalc6 A O THR 201 A THR 201 1_555 D CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc7 F CA CA . A CA 404 1_555 B OG SER 97 B SER 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc8 F CA CA . A CA 404 1_555 K O HOH . B HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc9 B O THR 8 B THR 8 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? metalc ? metalc10 B O THR 10 B THR 10 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc11 B OG1 THR 10 B THR 10 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc12 B O SER 196 B SER 196 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.981 ? metalc ? metalc13 B O THR 201 B THR 201 1_555 H CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LNM _atom_sites.fract_transf_matrix[1][1] 0.012953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009896 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005669 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PLG A 1 401 340 PLG PLG . D 3 CA A 1 402 401 CA CA . E 4 PLR A 1 403 350 PLR PLR . F 3 CA A 1 404 402 CA CA . G 5 EPE A 1 405 1 EPE EPE . H 3 CA B 1 401 400 CA CA . I 5 EPE B 1 402 3 EPE EPE . J 6 HOH A 1 501 18 HOH HOH . J 6 HOH A 2 502 19 HOH HOH . J 6 HOH A 3 503 20 HOH HOH . J 6 HOH A 4 504 21 HOH HOH . J 6 HOH A 5 505 22 HOH HOH . J 6 HOH A 6 506 23 HOH HOH . J 6 HOH A 7 507 24 HOH HOH . J 6 HOH A 8 508 25 HOH HOH . J 6 HOH A 9 509 26 HOH HOH . J 6 HOH A 10 510 27 HOH HOH . J 6 HOH A 11 511 28 HOH HOH . J 6 HOH A 12 512 29 HOH HOH . J 6 HOH A 13 513 30 HOH HOH . J 6 HOH A 14 514 31 HOH HOH . J 6 HOH A 15 515 32 HOH HOH . J 6 HOH A 16 516 33 HOH HOH . J 6 HOH A 17 517 34 HOH HOH . J 6 HOH A 18 518 35 HOH HOH . J 6 HOH A 19 519 36 HOH HOH . J 6 HOH A 20 520 37 HOH HOH . J 6 HOH A 21 521 38 HOH HOH . J 6 HOH A 22 522 39 HOH HOH . J 6 HOH A 23 523 40 HOH HOH . J 6 HOH A 24 524 41 HOH HOH . J 6 HOH A 25 525 42 HOH HOH . J 6 HOH A 26 526 43 HOH HOH . J 6 HOH A 27 527 44 HOH HOH . J 6 HOH A 28 528 45 HOH HOH . J 6 HOH A 29 529 46 HOH HOH . J 6 HOH A 30 530 47 HOH HOH . J 6 HOH A 31 531 48 HOH HOH . J 6 HOH A 32 532 53 HOH HOH . J 6 HOH A 33 533 54 HOH HOH . J 6 HOH A 34 534 55 HOH HOH . J 6 HOH A 35 535 56 HOH HOH . J 6 HOH A 36 536 57 HOH HOH . J 6 HOH A 37 537 58 HOH HOH . J 6 HOH A 38 538 59 HOH HOH . J 6 HOH A 39 539 60 HOH HOH . J 6 HOH A 40 540 61 HOH HOH . J 6 HOH A 41 541 62 HOH HOH . J 6 HOH A 42 542 66 HOH HOH . J 6 HOH A 43 543 67 HOH HOH . J 6 HOH A 44 544 68 HOH HOH . J 6 HOH A 45 545 90 HOH HOH . J 6 HOH A 46 546 99 HOH HOH . J 6 HOH A 47 547 100 HOH HOH . J 6 HOH A 48 548 101 HOH HOH . J 6 HOH A 49 549 102 HOH HOH . J 6 HOH A 50 550 103 HOH HOH . J 6 HOH A 51 551 104 HOH HOH . J 6 HOH A 52 552 105 HOH HOH . J 6 HOH A 53 553 106 HOH HOH . J 6 HOH A 54 554 107 HOH HOH . J 6 HOH A 55 555 108 HOH HOH . J 6 HOH A 56 556 113 HOH HOH . J 6 HOH A 57 557 116 HOH HOH . J 6 HOH A 58 558 118 HOH HOH . J 6 HOH A 59 559 119 HOH HOH . J 6 HOH A 60 560 120 HOH HOH . J 6 HOH A 61 561 121 HOH HOH . J 6 HOH A 62 562 122 HOH HOH . J 6 HOH A 63 563 123 HOH HOH . J 6 HOH A 64 564 124 HOH HOH . J 6 HOH A 65 565 125 HOH HOH . J 6 HOH A 66 566 126 HOH HOH . J 6 HOH A 67 567 127 HOH HOH . J 6 HOH A 68 568 128 HOH HOH . J 6 HOH A 69 569 129 HOH HOH . J 6 HOH A 70 570 130 HOH HOH . J 6 HOH A 71 571 131 HOH HOH . J 6 HOH A 72 572 178 HOH HOH . J 6 HOH A 73 573 179 HOH HOH . J 6 HOH A 74 574 180 HOH HOH . J 6 HOH A 75 575 192 HOH HOH . J 6 HOH A 76 576 193 HOH HOH . J 6 HOH A 77 577 194 HOH HOH . J 6 HOH A 78 578 195 HOH HOH . J 6 HOH A 79 579 196 HOH HOH . J 6 HOH A 80 580 200 HOH HOH . J 6 HOH A 81 581 202 HOH HOH . J 6 HOH A 82 582 203 HOH HOH . J 6 HOH A 83 583 204 HOH HOH . J 6 HOH A 84 584 205 HOH HOH . J 6 HOH A 85 585 206 HOH HOH . J 6 HOH A 86 586 207 HOH HOH . J 6 HOH A 87 587 208 HOH HOH . J 6 HOH A 88 588 209 HOH HOH . J 6 HOH A 89 589 210 HOH HOH . J 6 HOH A 90 590 211 HOH HOH . J 6 HOH A 91 591 212 HOH HOH . J 6 HOH A 92 592 213 HOH HOH . J 6 HOH A 93 593 214 HOH HOH . J 6 HOH A 94 594 215 HOH HOH . J 6 HOH A 95 595 220 HOH HOH . J 6 HOH A 96 596 221 HOH HOH . J 6 HOH A 97 597 222 HOH HOH . J 6 HOH A 98 598 223 HOH HOH . J 6 HOH A 99 599 224 HOH HOH . J 6 HOH A 100 600 225 HOH HOH . J 6 HOH A 101 601 226 HOH HOH . J 6 HOH A 102 602 227 HOH HOH . J 6 HOH A 103 603 228 HOH HOH . J 6 HOH A 104 604 229 HOH HOH . J 6 HOH A 105 605 230 HOH HOH . J 6 HOH A 106 606 231 HOH HOH . J 6 HOH A 107 607 232 HOH HOH . J 6 HOH A 108 608 233 HOH HOH . J 6 HOH A 109 609 234 HOH HOH . J 6 HOH A 110 610 235 HOH HOH . J 6 HOH A 111 611 236 HOH HOH . J 6 HOH A 112 612 237 HOH HOH . J 6 HOH A 113 613 238 HOH HOH . K 6 HOH B 1 501 1 HOH HOH . K 6 HOH B 2 502 2 HOH HOH . K 6 HOH B 3 503 3 HOH HOH . K 6 HOH B 4 504 4 HOH HOH . K 6 HOH B 5 505 5 HOH HOH . K 6 HOH B 6 506 6 HOH HOH . K 6 HOH B 7 507 7 HOH HOH . K 6 HOH B 8 508 8 HOH HOH . K 6 HOH B 9 509 9 HOH HOH . K 6 HOH B 10 510 10 HOH HOH . K 6 HOH B 11 511 11 HOH HOH . K 6 HOH B 12 512 12 HOH HOH . K 6 HOH B 13 513 13 HOH HOH . K 6 HOH B 14 514 14 HOH HOH . K 6 HOH B 15 515 15 HOH HOH . K 6 HOH B 16 516 16 HOH HOH . K 6 HOH B 17 517 17 HOH HOH . K 6 HOH B 18 518 49 HOH HOH . K 6 HOH B 19 519 50 HOH HOH . K 6 HOH B 20 520 51 HOH HOH . K 6 HOH B 21 521 52 HOH HOH . K 6 HOH B 22 522 63 HOH HOH . K 6 HOH B 23 523 64 HOH HOH . K 6 HOH B 24 524 65 HOH HOH . K 6 HOH B 25 525 69 HOH HOH . K 6 HOH B 26 526 70 HOH HOH . K 6 HOH B 27 527 71 HOH HOH . K 6 HOH B 28 528 72 HOH HOH . K 6 HOH B 29 529 73 HOH HOH . K 6 HOH B 30 530 74 HOH HOH . K 6 HOH B 31 531 75 HOH HOH . K 6 HOH B 32 532 76 HOH HOH . K 6 HOH B 33 533 77 HOH HOH . K 6 HOH B 34 534 78 HOH HOH . K 6 HOH B 35 535 79 HOH HOH . K 6 HOH B 36 536 80 HOH HOH . K 6 HOH B 37 537 81 HOH HOH . K 6 HOH B 38 538 82 HOH HOH . K 6 HOH B 39 539 83 HOH HOH . K 6 HOH B 40 540 84 HOH HOH . K 6 HOH B 41 541 85 HOH HOH . K 6 HOH B 42 542 86 HOH HOH . K 6 HOH B 43 543 87 HOH HOH . K 6 HOH B 44 544 88 HOH HOH . K 6 HOH B 45 545 89 HOH HOH . K 6 HOH B 46 546 91 HOH HOH . K 6 HOH B 47 547 92 HOH HOH . K 6 HOH B 48 548 93 HOH HOH . K 6 HOH B 49 549 94 HOH HOH . K 6 HOH B 50 550 95 HOH HOH . K 6 HOH B 51 551 96 HOH HOH . K 6 HOH B 52 552 97 HOH HOH . K 6 HOH B 53 553 98 HOH HOH . K 6 HOH B 54 554 109 HOH HOH . K 6 HOH B 55 555 110 HOH HOH . K 6 HOH B 56 556 111 HOH HOH . K 6 HOH B 57 557 112 HOH HOH . K 6 HOH B 58 558 114 HOH HOH . K 6 HOH B 59 559 115 HOH HOH . K 6 HOH B 60 560 117 HOH HOH . K 6 HOH B 61 561 132 HOH HOH . K 6 HOH B 62 562 133 HOH HOH . K 6 HOH B 63 563 134 HOH HOH . K 6 HOH B 64 564 135 HOH HOH . K 6 HOH B 65 565 136 HOH HOH . K 6 HOH B 66 566 137 HOH HOH . K 6 HOH B 67 567 138 HOH HOH . K 6 HOH B 68 568 139 HOH HOH . K 6 HOH B 69 569 140 HOH HOH . K 6 HOH B 70 570 141 HOH HOH . K 6 HOH B 71 571 142 HOH HOH . K 6 HOH B 72 572 143 HOH HOH . K 6 HOH B 73 573 144 HOH HOH . K 6 HOH B 74 574 145 HOH HOH . K 6 HOH B 75 575 146 HOH HOH . K 6 HOH B 76 576 147 HOH HOH . K 6 HOH B 77 577 148 HOH HOH . K 6 HOH B 78 578 149 HOH HOH . K 6 HOH B 79 579 150 HOH HOH . K 6 HOH B 80 580 151 HOH HOH . K 6 HOH B 81 581 152 HOH HOH . K 6 HOH B 82 582 153 HOH HOH . K 6 HOH B 83 583 154 HOH HOH . K 6 HOH B 84 584 155 HOH HOH . K 6 HOH B 85 585 156 HOH HOH . K 6 HOH B 86 586 157 HOH HOH . K 6 HOH B 87 587 158 HOH HOH . K 6 HOH B 88 588 159 HOH HOH . K 6 HOH B 89 589 160 HOH HOH . K 6 HOH B 90 590 161 HOH HOH . K 6 HOH B 91 591 162 HOH HOH . K 6 HOH B 92 592 163 HOH HOH . K 6 HOH B 93 593 164 HOH HOH . K 6 HOH B 94 594 165 HOH HOH . K 6 HOH B 95 595 166 HOH HOH . K 6 HOH B 96 596 167 HOH HOH . K 6 HOH B 97 597 168 HOH HOH . K 6 HOH B 98 598 169 HOH HOH . K 6 HOH B 99 599 170 HOH HOH . K 6 HOH B 100 600 171 HOH HOH . K 6 HOH B 101 601 172 HOH HOH . K 6 HOH B 102 602 173 HOH HOH . K 6 HOH B 103 603 174 HOH HOH . K 6 HOH B 104 604 175 HOH HOH . K 6 HOH B 105 605 176 HOH HOH . K 6 HOH B 106 606 177 HOH HOH . K 6 HOH B 107 607 181 HOH HOH . K 6 HOH B 108 608 182 HOH HOH . K 6 HOH B 109 609 183 HOH HOH . K 6 HOH B 110 610 184 HOH HOH . K 6 HOH B 111 611 185 HOH HOH . K 6 HOH B 112 612 186 HOH HOH . K 6 HOH B 113 613 187 HOH HOH . K 6 HOH B 114 614 188 HOH HOH . K 6 HOH B 115 615 189 HOH HOH . K 6 HOH B 116 616 190 HOH HOH . K 6 HOH B 117 617 191 HOH HOH . K 6 HOH B 118 618 197 HOH HOH . K 6 HOH B 119 619 198 HOH HOH . K 6 HOH B 120 620 199 HOH HOH . K 6 HOH B 121 621 201 HOH HOH . K 6 HOH B 122 622 216 HOH HOH . K 6 HOH B 123 623 217 HOH HOH . K 6 HOH B 124 624 218 HOH HOH . K 6 HOH B 125 625 219 HOH HOH . K 6 HOH B 126 626 239 HOH HOH . K 6 HOH B 127 627 240 HOH HOH . K 6 HOH B 128 628 241 HOH HOH . K 6 HOH B 129 629 242 HOH HOH . K 6 HOH B 130 630 243 HOH HOH . K 6 HOH B 131 631 244 HOH HOH . K 6 HOH B 132 632 245 HOH HOH . K 6 HOH B 133 633 246 HOH HOH . K 6 HOH B 134 634 247 HOH HOH . K 6 HOH B 135 635 249 HOH HOH . K 6 HOH B 136 636 250 HOH HOH . K 6 HOH B 137 637 251 HOH HOH . K 6 HOH B 138 638 252 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 3 _atom_site.Cartn_x 9.941 _atom_site.Cartn_y 21.262 _atom_site.Cartn_z 74.935 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #