data_4LNV # _model_server_result.job_id 2xRxrege4XbVPeHAuLyomw _model_server_result.datetime_utc '2024-11-05 00:53:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1401}' # _entry.id 4LNV # _exptl.entry_id 4LNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LNV _cell.length_a 196.472 _cell.length_b 196.472 _cell.length_c 225.267 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,K 1 1 B,L 2 1 C,M,N,O,P,Q,R,S 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 R N N ? 3 S N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG A 2006 NAG 2 n D NAG 2 D 2 NAG A 2007 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 1196 A CYS 1217 1_555 A SG CYS 1262 A CYS 1283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 1305 A CYS 1326 1_555 A SG CYS 1317 A CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf3 A SG CYS 1308 A CYS 1329 1_555 A SG CYS 1313 A CYS 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 1196 B CYS 1217 1_555 B SG CYS 1262 B CYS 1283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf5 B SG CYS 1305 B CYS 1326 1_555 B SG CYS 1317 B CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf6 B SG CYS 1308 B CYS 1329 1_555 B SG CYS 1313 B CYS 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 C SG CYS 1196 C CYS 1217 1_555 C SG CYS 1262 C CYS 1283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf8 C SG CYS 1305 C CYS 1326 1_555 C SG CYS 1317 C CYS 1338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 C SG CYS 1308 C CYS 1329 1_555 C SG CYS 1313 C CYS 1334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? covale ? covale1 A ND2 ASN 47 A ASN 68 1_555 E C1 NAG . A NAG 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 221 A ASN 242 1_555 F C1 NAG . A NAG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale3 A ND2 ASN 291 A ASN 312 1_555 G C1 NAG . A NAG 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale4 A ND2 ASN 460 A ASN 481 1_555 I C1 NAG . A NAG 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 A ND2 ASN 616 A ASN 637 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale6 A ND2 ASN 707 A ASN 728 1_555 J C1 NAG . A NAG 2008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale7 A ND2 ASN 792 A ASN 813 1_555 K C1 NAG . A NAG 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale8 A SG CYS 838 A CYS 859 1_555 A CD GLN 841 A GLN 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale9 B ND2 ASN 291 B ASN 312 1_555 L C1 NAG . B NAG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale10 B SG CYS 838 B CYS 859 1_555 B CD GLN 841 B GLN 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? covale ? covale11 C ND2 ASN 221 C ASN 242 1_555 M C1 NAG . C NAG 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale12 C ND2 ASN 291 C ASN 312 1_555 N C1 NAG . C NAG 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale13 C ND2 ASN 460 C ASN 481 1_555 P C1 NAG . C NAG 1404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale14 C ND2 ASN 616 C ASN 637 1_555 R C1 NAG . C NAG 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? covale ? covale15 C ND2 ASN 707 C ASN 728 1_555 Q C1 NAG . C NAG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale16 C ND2 ASN 792 C ASN 813 1_555 S C1 NAG . C NAG 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale17 C SG CYS 838 C CYS 859 1_555 C CD GLN 841 C GLN 862 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.774 ? covale ? covale18 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4LNV _atom_sites.fract_transf_matrix[1][1] 0.00509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 2001 2001 NAG NAG . F 3 NAG A 1 2002 2002 NAG NAG . G 3 NAG A 1 2003 2003 NAG NAG . H 3 NAG A 1 2004 2004 NAG NAG . I 3 NAG A 1 2005 2005 NAG NAG . J 3 NAG A 1 2008 2008 NAG NAG . K 3 NAG A 1 2009 2009 NAG NAG . L 3 NAG B 1 1401 1401 NAG NAG . M 3 NAG C 1 1401 1401 NAG NAG . N 3 NAG C 1 1402 1402 NAG NAG . O 3 NAG C 1 1403 1403 NAG NAG . P 3 NAG C 1 1404 1404 NAG NAG . Q 3 NAG C 1 1405 1405 NAG NAG . R 3 NAG C 1 1406 1406 NAG NAG . S 3 NAG C 1 1407 1407 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . L 3 48.518 -111.347 -24.584 1 175.56 ? C1 NAG 1401 B 1 HETATM 2 C C2 NAG . . . L 3 49.609 -111.27 -23.509 1 176.04 ? C2 NAG 1401 B 1 HETATM 3 C C3 NAG . . . L 3 50.735 -112.267 -23.801 1 176.05 ? C3 NAG 1401 B 1 HETATM 4 C C4 NAG . . . L 3 50.205 -113.678 -24.057 1 175.94 ? C4 NAG 1401 B 1 HETATM 5 C C5 NAG . . . L 3 49.01 -113.67 -25.019 1 175.85 ? C5 NAG 1401 B 1 HETATM 6 C C6 NAG . . . L 3 48.338 -115.043 -25.069 1 176.18 ? C6 NAG 1401 B 1 HETATM 7 C C7 NAG . . . L 3 49.686 -109.021 -22.536 1 176.49 ? C7 NAG 1401 B 1 HETATM 8 C C8 NAG . . . L 3 50.372 -107.686 -22.524 1 176.43 ? C8 NAG 1401 B 1 HETATM 9 N N2 NAG . . . L 3 50.162 -109.929 -23.388 1 176.28 ? N2 NAG 1401 B 1 HETATM 10 O O3 NAG . . . L 3 51.668 -112.288 -22.74 1 175.65 ? O3 NAG 1401 B 1 HETATM 11 O O4 NAG . . . L 3 51.237 -114.489 -24.583 1 175.42 ? O4 NAG 1401 B 1 HETATM 12 O O5 NAG . . . L 3 48.043 -112.686 -24.659 1 175.62 ? O5 NAG 1401 B 1 HETATM 13 O O6 NAG . . . L 3 48.984 -115.968 -24.214 1 176.47 ? O6 NAG 1401 B 1 HETATM 14 O O7 NAG . . . L 3 48.739 -109.233 -21.778 1 176.85 ? O7 NAG 1401 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #