data_4LOL # _model_server_result.job_id xAZJ81CgMn0zyQPghr9zQQ _model_server_result.datetime_utc '2024-11-25 10:49:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 4LOL # _exptl.entry_id 4LOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.291 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LOL _cell.length_a 108.376 _cell.length_b 108.376 _cell.length_c 101.205 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H14 O4' _chem_comp.formula_weight 282.291 _chem_comp.id 1YE _chem_comp.mon_nstd_flag . _chem_comp.name '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAF 1YE doub 1 n y CAG CAP 1YE sing 2 n y CAK CAM 1YE sing 3 n n CAK CAP 1YE sing 4 n n CAF CAI 1YE sing 5 n y CAM OAC 1YE doub 6 n n CAM OAE 1YE sing 7 n n CAP CAU 1YE doub 8 n y CAI CAR 1YE doub 9 n y CAU CAR 1YE sing 10 n y CAU OAL 1YE sing 11 n n CAR CAQ 1YE sing 12 n n OAL CAT 1YE sing 13 n n CAQ OAD 1YE doub 14 n n CAQ CAS 1YE sing 15 n n CAT CAS 1YE doub 16 n y CAT CAO 1YE sing 17 n y CAB CAO 1YE sing 18 n n CAS CAJ 1YE sing 19 n y CAO CAN 1YE doub 20 n y CAJ CAH 1YE doub 21 n y CAN CAH 1YE sing 22 n y CAN CAA 1YE sing 23 n n CAJ H1 1YE sing 24 n n CAH H2 1YE sing 25 n n CAA H3 1YE sing 26 n n CAA H4 1YE sing 27 n n CAA H5 1YE sing 28 n n CAB H6 1YE sing 29 n n CAB H7 1YE sing 30 n n CAB H8 1YE sing 31 n n CAI H9 1YE sing 32 n n CAF H10 1YE sing 33 n n CAG H11 1YE sing 34 n n CAK H12 1YE sing 35 n n CAK H13 1YE sing 36 n n OAE H14 1YE sing 37 n n # _atom_sites.entry_id 4LOL _atom_sites.fract_transf_matrix[1][1] 0.009227 _atom_sites.fract_transf_matrix[1][2] 0.005327 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1YE A 1 401 1 1YE 1YE . D 2 1YE A 1 402 2 1YE 1YE . E 3 HOH A 1 501 3 HOH HOH . E 3 HOH A 2 502 4 HOH HOH . E 3 HOH A 3 503 13 HOH HOH . E 3 HOH A 4 504 31 HOH HOH . E 3 HOH A 5 505 40 HOH HOH . E 3 HOH A 6 506 60 HOH HOH . E 3 HOH A 7 507 113 HOH HOH . E 3 HOH A 8 508 115 HOH HOH . E 3 HOH A 9 509 116 HOH HOH . E 3 HOH A 10 510 117 HOH HOH . E 3 HOH A 11 511 119 HOH HOH . E 3 HOH A 12 512 120 HOH HOH . E 3 HOH A 13 513 121 HOH HOH . E 3 HOH A 14 514 122 HOH HOH . E 3 HOH A 15 515 125 HOH HOH . E 3 HOH A 16 516 128 HOH HOH . E 3 HOH A 17 517 129 HOH HOH . E 3 HOH A 18 518 130 HOH HOH . E 3 HOH A 19 519 131 HOH HOH . E 3 HOH A 20 520 140 HOH HOH . E 3 HOH A 21 521 142 HOH HOH . F 3 HOH B 1 401 5 HOH HOH . F 3 HOH B 2 402 8 HOH HOH . F 3 HOH B 3 403 9 HOH HOH . F 3 HOH B 4 404 64 HOH HOH . F 3 HOH B 5 405 70 HOH HOH . F 3 HOH B 6 406 133 HOH HOH . F 3 HOH B 7 407 134 HOH HOH . F 3 HOH B 8 408 136 HOH HOH . F 3 HOH B 9 409 137 HOH HOH . F 3 HOH B 10 410 139 HOH HOH . F 3 HOH B 11 411 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD 1YE . . . C 2 23.111 -30.876 -10.641 1 39.49 ? OAD 1YE 401 A 1 HETATM 2 C CAQ 1YE . . . C 2 22.13 -30.228 -11.045 1 41.76 ? CAQ 1YE 401 A 1 HETATM 3 C CAS 1YE . . . C 2 21.272 -29.508 -10.211 1 43.15 ? CAS 1YE 401 A 1 HETATM 4 C CAJ 1YE . . . C 2 21.544 -29.377 -8.863 1 44.22 ? CAJ 1YE 401 A 1 HETATM 5 C CAH 1YE . . . C 2 20.673 -28.633 -8.08 1 43.57 ? CAH 1YE 401 A 1 HETATM 6 C CAN 1YE . . . C 2 19.524 -28.033 -8.589 1 48.79 ? CAN 1YE 401 A 1 HETATM 7 C CAA 1YE . . . C 2 18.706 -27.287 -7.681 1 49.12 ? CAA 1YE 401 A 1 HETATM 8 C CAO 1YE . . . C 2 19.246 -28.147 -9.959 1 42.95 ? CAO 1YE 401 A 1 HETATM 9 C CAB 1YE . . . C 2 18.11 -27.578 -10.574 1 45.09 ? CAB 1YE 401 A 1 HETATM 10 C CAT 1YE . . . C 2 20.123 -28.875 -10.718 1 39.4 ? CAT 1YE 401 A 1 HETATM 11 O OAL 1YE . . . C 2 19.78 -28.959 -12.005 1 40.94 ? OAL 1YE 401 A 1 HETATM 12 C CAU 1YE . . . C 2 20.648 -29.549 -12.847 1 39.99 ? CAU 1YE 401 A 1 HETATM 13 C CAR 1YE . . . C 2 21.82 -30.176 -12.391 1 43.13 ? CAR 1YE 401 A 1 HETATM 14 C CAI 1YE . . . C 2 22.671 -30.773 -13.293 1 39.68 ? CAI 1YE 401 A 1 HETATM 15 C CAF 1YE . . . C 2 22.348 -30.736 -14.62 1 37.95 ? CAF 1YE 401 A 1 HETATM 16 C CAG 1YE . . . C 2 21.188 -30.094 -15.045 1 39.64 ? CAG 1YE 401 A 1 HETATM 17 C CAP 1YE . . . C 2 20.32 -29.476 -14.175 1 37.72 ? CAP 1YE 401 A 1 HETATM 18 C CAK 1YE . . . C 2 19.155 -28.837 -14.625 1 42.07 ? CAK 1YE 401 A 1 HETATM 19 C CAM 1YE . . . C 2 19.09 -27.308 -14.266 1 43.77 ? CAM 1YE 401 A 1 HETATM 20 O OAE 1YE . . . C 2 20.116 -26.651 -14.018 1 51.83 ? OAE 1YE 401 A 1 HETATM 21 O OAC 1YE . . . C 2 17.963 -26.788 -14.244 1 48.43 ? OAC 1YE 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 21 #