data_4LOL # _model_server_result.job_id 4JHlSvmCdh-wX6Q26VBBKQ _model_server_result.datetime_utc '2024-11-25 10:46:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lol # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4LOL # _exptl.entry_id 4LOL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.291 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LOL _cell.length_a 108.376 _cell.length_b 108.376 _cell.length_c 101.205 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LOL _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H14 O4' _chem_comp.formula_weight 282.291 _chem_comp.id 1YE _chem_comp.mon_nstd_flag . _chem_comp.name '(5,6-dimethyl-9-oxo-9H-xanthen-4-yl)acetic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAG CAF 1YE doub 1 n y CAG CAP 1YE sing 2 n y CAK CAM 1YE sing 3 n n CAK CAP 1YE sing 4 n n CAF CAI 1YE sing 5 n y CAM OAC 1YE doub 6 n n CAM OAE 1YE sing 7 n n CAP CAU 1YE doub 8 n y CAI CAR 1YE doub 9 n y CAU CAR 1YE sing 10 n y CAU OAL 1YE sing 11 n n CAR CAQ 1YE sing 12 n n OAL CAT 1YE sing 13 n n CAQ OAD 1YE doub 14 n n CAQ CAS 1YE sing 15 n n CAT CAS 1YE doub 16 n y CAT CAO 1YE sing 17 n y CAB CAO 1YE sing 18 n n CAS CAJ 1YE sing 19 n y CAO CAN 1YE doub 20 n y CAJ CAH 1YE doub 21 n y CAN CAH 1YE sing 22 n y CAN CAA 1YE sing 23 n n CAJ H1 1YE sing 24 n n CAH H2 1YE sing 25 n n CAA H3 1YE sing 26 n n CAA H4 1YE sing 27 n n CAA H5 1YE sing 28 n n CAB H6 1YE sing 29 n n CAB H7 1YE sing 30 n n CAB H8 1YE sing 31 n n CAI H9 1YE sing 32 n n CAF H10 1YE sing 33 n n CAG H11 1YE sing 34 n n CAK H12 1YE sing 35 n n CAK H13 1YE sing 36 n n OAE H14 1YE sing 37 n n # _atom_sites.entry_id 4LOL _atom_sites.fract_transf_matrix[1][1] 0.009227 _atom_sites.fract_transf_matrix[1][2] 0.005327 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010655 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009881 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 1YE A 1 401 1 1YE 1YE . D 2 1YE A 1 402 2 1YE 1YE . E 3 HOH A 1 501 3 HOH HOH . E 3 HOH A 2 502 4 HOH HOH . E 3 HOH A 3 503 13 HOH HOH . E 3 HOH A 4 504 31 HOH HOH . E 3 HOH A 5 505 40 HOH HOH . E 3 HOH A 6 506 60 HOH HOH . E 3 HOH A 7 507 113 HOH HOH . E 3 HOH A 8 508 115 HOH HOH . E 3 HOH A 9 509 116 HOH HOH . E 3 HOH A 10 510 117 HOH HOH . E 3 HOH A 11 511 119 HOH HOH . E 3 HOH A 12 512 120 HOH HOH . E 3 HOH A 13 513 121 HOH HOH . E 3 HOH A 14 514 122 HOH HOH . E 3 HOH A 15 515 125 HOH HOH . E 3 HOH A 16 516 128 HOH HOH . E 3 HOH A 17 517 129 HOH HOH . E 3 HOH A 18 518 130 HOH HOH . E 3 HOH A 19 519 131 HOH HOH . E 3 HOH A 20 520 140 HOH HOH . E 3 HOH A 21 521 142 HOH HOH . F 3 HOH B 1 401 5 HOH HOH . F 3 HOH B 2 402 8 HOH HOH . F 3 HOH B 3 403 9 HOH HOH . F 3 HOH B 4 404 64 HOH HOH . F 3 HOH B 5 405 70 HOH HOH . F 3 HOH B 6 406 133 HOH HOH . F 3 HOH B 7 407 134 HOH HOH . F 3 HOH B 8 408 136 HOH HOH . F 3 HOH B 9 409 137 HOH HOH . F 3 HOH B 10 410 139 HOH HOH . F 3 HOH B 11 411 141 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAD 1YE . . . D 2 20.34 -34.942 -18.329 1 44.22 ? OAD 1YE 402 A 1 HETATM 2 C CAQ 1YE . . . D 2 19.436 -34.244 -17.924 1 44.58 ? CAQ 1YE 402 A 1 HETATM 3 C CAS 1YE . . . D 2 18.515 -33.701 -18.797 1 44.86 ? CAS 1YE 402 A 1 HETATM 4 C CAJ 1YE . . . D 2 18.528 -33.983 -20.153 1 44.41 ? CAJ 1YE 402 A 1 HETATM 5 C CAH 1YE . . . D 2 17.541 -33.371 -20.945 1 46.49 ? CAH 1YE 402 A 1 HETATM 6 C CAN 1YE . . . D 2 16.566 -32.499 -20.439 1 43.97 ? CAN 1YE 402 A 1 HETATM 7 C CAA 1YE . . . D 2 15.618 -31.933 -21.322 1 48.28 ? CAA 1YE 402 A 1 HETATM 8 C CAO 1YE . . . D 2 16.559 -32.214 -19.078 1 44.9 ? CAO 1YE 402 A 1 HETATM 9 C CAB 1YE . . . D 2 15.623 -31.354 -18.506 1 43.83 ? CAB 1YE 402 A 1 HETATM 10 C CAT 1YE . . . D 2 17.54 -32.818 -18.304 1 42.29 ? CAT 1YE 402 A 1 HETATM 11 O OAL 1YE . . . D 2 17.507 -32.504 -17 1 40.47 ? OAL 1YE 402 A 1 HETATM 12 C CAU 1YE . . . D 2 18.336 -33.078 -16.126 1 42.42 ? CAU 1YE 402 A 1 HETATM 13 C CAR 1YE . . . D 2 19.321 -33.955 -16.575 1 44.16 ? CAR 1YE 402 A 1 HETATM 14 C CAI 1YE . . . D 2 20.171 -34.52 -15.643 1 39.77 ? CAI 1YE 402 A 1 HETATM 15 C CAF 1YE . . . D 2 20.011 -34.175 -14.317 1 36.2 ? CAF 1YE 402 A 1 HETATM 16 C CAG 1YE . . . D 2 19.003 -33.319 -13.915 1 37.72 ? CAG 1YE 402 A 1 HETATM 17 C CAP 1YE . . . D 2 18.118 -32.749 -14.8 1 43.67 ? CAP 1YE 402 A 1 HETATM 18 C CAK 1YE . . . D 2 17.127 -31.844 -14.366 1 45.05 ? CAK 1YE 402 A 1 HETATM 19 C CAM 1YE . . . D 2 15.666 -32.287 -14.717 1 49.25 ? CAM 1YE 402 A 1 HETATM 20 O OAE 1YE . . . D 2 15.442 -33.419 -15.233 1 46.61 ? OAE 1YE 402 A 1 HETATM 21 O OAC 1YE . . . D 2 14.779 -31.439 -14.48 1 44.56 ? OAC 1YE 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #