data_4LPF # _model_server_result.job_id uWUVxX4NFFKPsIEUwj79jg _model_server_result.datetime_utc '2025-07-30 22:07:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lpf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4LPF # _exptl.entry_id 4LPF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LPF _cell.length_a 112.211 _cell.length_b 112.211 _cell.length_c 112.211 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LPF _symmetry.cell_setting ? _symmetry.Int_Tables_number 207 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 53 A HIS 47 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc2 A NE2 HIS 79 A HIS 73 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 A OE1 GLU 83 A GLU 77 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc4 A NE2 HIS 158 A HIS 152 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc5 A NE2 HIS 182 A HIS 176 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 A OE1 GLU 186 A GLU 180 1_555 D MN MN . A MN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 B N4 3TR . A 3TR 301 1_555 C MN MN . A MN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc8 C MN MN . A MN 302 1_555 F O HOH . A HOH 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LPF _atom_sites.fract_transf_matrix[1][1] 0.008912 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008912 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3TR A 1 301 300 3TR 3TR . C 3 MN A 1 302 401 MN MN . D 3 MN A 1 303 402 MN MN . E 3 MN A 1 304 403 MN MN . F 4 HOH A 1 501 501 HOH HOH . F 4 HOH A 2 502 502 HOH HOH . F 4 HOH A 3 503 504 HOH HOH . F 4 HOH A 4 504 505 HOH HOH . F 4 HOH A 5 505 506 HOH HOH . F 4 HOH A 6 506 507 HOH HOH . F 4 HOH A 7 507 508 HOH HOH . F 4 HOH A 8 508 509 HOH HOH . F 4 HOH A 9 509 510 HOH HOH . F 4 HOH A 10 510 511 HOH HOH . F 4 HOH A 11 511 512 HOH HOH . F 4 HOH A 12 512 513 HOH HOH . F 4 HOH A 13 513 514 HOH HOH . F 4 HOH A 14 514 515 HOH HOH . F 4 HOH A 15 515 516 HOH HOH . F 4 HOH A 16 516 517 HOH HOH . F 4 HOH A 17 517 518 HOH HOH . F 4 HOH A 18 518 519 HOH HOH . F 4 HOH A 19 519 520 HOH HOH . F 4 HOH A 20 520 521 HOH HOH . F 4 HOH A 21 521 522 HOH HOH . F 4 HOH A 22 522 523 HOH HOH . F 4 HOH A 23 523 524 HOH HOH . F 4 HOH A 24 524 525 HOH HOH . F 4 HOH A 25 525 526 HOH HOH . F 4 HOH A 26 526 527 HOH HOH . F 4 HOH A 27 527 528 HOH HOH . F 4 HOH A 28 528 529 HOH HOH . F 4 HOH A 29 529 530 HOH HOH . F 4 HOH A 30 530 531 HOH HOH . F 4 HOH A 31 531 532 HOH HOH . F 4 HOH A 32 532 533 HOH HOH . F 4 HOH A 33 533 534 HOH HOH . F 4 HOH A 34 534 535 HOH HOH . F 4 HOH A 35 535 536 HOH HOH . F 4 HOH A 36 536 537 HOH HOH . F 4 HOH A 37 537 538 HOH HOH . F 4 HOH A 38 538 540 HOH HOH . F 4 HOH A 39 539 542 HOH HOH . F 4 HOH A 40 540 543 HOH HOH . F 4 HOH A 41 541 544 HOH HOH . F 4 HOH A 42 542 545 HOH HOH . F 4 HOH A 43 543 546 HOH HOH . F 4 HOH A 44 544 547 HOH HOH . F 4 HOH A 45 545 548 HOH HOH . F 4 HOH A 46 546 549 HOH HOH . F 4 HOH A 47 547 550 HOH HOH . F 4 HOH A 48 548 551 HOH HOH . F 4 HOH A 49 549 552 HOH HOH . F 4 HOH A 50 550 553 HOH HOH . F 4 HOH A 51 551 554 HOH HOH . F 4 HOH A 52 552 555 HOH HOH . F 4 HOH A 53 553 556 HOH HOH . F 4 HOH A 54 554 557 HOH HOH . F 4 HOH A 55 555 560 HOH HOH . F 4 HOH A 56 556 561 HOH HOH . F 4 HOH A 57 557 562 HOH HOH . F 4 HOH A 58 558 563 HOH HOH . F 4 HOH A 59 559 564 HOH HOH . F 4 HOH A 60 560 565 HOH HOH . F 4 HOH A 61 561 566 HOH HOH . F 4 HOH A 62 562 567 HOH HOH . F 4 HOH A 63 563 568 HOH HOH . F 4 HOH A 64 564 570 HOH HOH . F 4 HOH A 65 565 571 HOH HOH . F 4 HOH A 66 566 572 HOH HOH . F 4 HOH A 67 567 573 HOH HOH . F 4 HOH A 68 568 574 HOH HOH . F 4 HOH A 69 569 575 HOH HOH . F 4 HOH A 70 570 576 HOH HOH . F 4 HOH A 71 571 577 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -19.351 _atom_site.Cartn_y 19.351 _atom_site.Cartn_z 19.351 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 40.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 304 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #