data_4LPG
#
_model_server_result.job_id            t48vfjdS0OxxcjQAWj046w 
_model_server_result.datetime_utc      '2024-11-16 10:44:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lpg 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
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_entry.id    4LPG 
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_exptl.entry_id    4LPG 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              415.298 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '({[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methanediyl)bis(phosphonic acid)' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LPG 
_cell.length_a            110.87 
_cell.length_b            110.87 
_cell.length_c            77.03 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4LPG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 110.87 110.87 38.515 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H15 N3 O6 P2 S' 
_chem_comp.formula_weight    415.298 
_chem_comp.id                1MV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '({[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methanediyl)bis(phosphonic acid)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OAU PAS 1MV doub 1 n n 
PAS OAV 1MV sing 2 n n 
PAS OAW 1MV sing 3 n n 
PAS CAR 1MV sing 4 n n 
CAR PAT 1MV sing 5 n n 
CAR NAJ 1MV sing 6 n n 
PAT OAX 1MV doub 7 n n 
PAT OAZ 1MV sing 8 n n 
PAT OAY 1MV sing 9 n n 
NAJ C4 1MV sing 10 n n 
C4 N3 1MV doub 11 n y 
C4 C5 1MV sing 12 n y 
N3 C2 1MV sing 13 n y 
C2 N1 1MV doub 14 n y 
N1 C6 1MV sing 15 n y 
C6 SAE 1MV sing 16 n y 
C6 C5 1MV doub 17 n y 
SAE CAD 1MV sing 18 n y 
C5 CAC 1MV sing 19 n y 
CAC CAD 1MV doub 20 n y 
CAD CAK 1MV sing 21 n n 
CAK CAL 1MV doub 22 n y 
CAK CAP 1MV sing 23 n y 
CAL CAM 1MV sing 24 n y 
CAM CAN 1MV doub 25 n y 
CAN CAQ 1MV sing 26 n n 
CAN CAO 1MV sing 27 n y 
CAO CAP 1MV doub 28 n y 
OAV H1 1MV sing 29 n n 
OAW H2 1MV sing 30 n n 
CAR H3 1MV sing 31 n n 
OAZ H4 1MV sing 32 n n 
OAY H5 1MV sing 33 n n 
NAJ H6 1MV sing 34 n n 
C2 H7 1MV sing 35 n n 
CAC H8 1MV sing 36 n n 
CAL H10 1MV sing 37 n n 
CAM H11 1MV sing 38 n n 
CAQ H12 1MV sing 39 n n 
CAQ H13 1MV sing 40 n n 
CAQ H14 1MV sing 41 n n 
CAO H15 1MV sing 42 n n 
CAP H16 1MV sing 43 n n 
#
_atom_sites.entry_id                     4LPG 
_atom_sites.fract_transf_matrix[1][1]    0.00902 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00902 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012982 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 PO4 F 1 401 1 PO4 PO4 . 
C 3 1MV F 1 402 1 1MV YL1 . 
D 4 HOH F 1 501 1 HOH HOH . 
D 4 HOH F 2 502 2 HOH HOH . 
D 4 HOH F 3 503 3 HOH HOH . 
D 4 HOH F 4 504 4 HOH HOH . 
D 4 HOH F 5 505 5 HOH HOH . 
D 4 HOH F 6 506 6 HOH HOH . 
D 4 HOH F 7 507 7 HOH HOH . 
D 4 HOH F 8 508 8 HOH HOH . 
D 4 HOH F 9 509 9 HOH HOH . 
D 4 HOH F 10 510 10 HOH HOH . 
D 4 HOH F 11 511 11 HOH HOH . 
D 4 HOH F 12 512 12 HOH HOH . 
D 4 HOH F 13 513 13 HOH HOH . 
D 4 HOH F 14 514 14 HOH HOH . 
D 4 HOH F 15 515 15 HOH HOH . 
D 4 HOH F 16 516 16 HOH HOH . 
D 4 HOH F 17 517 17 HOH HOH . 
D 4 HOH F 18 518 18 HOH HOH . 
D 4 HOH F 19 519 19 HOH HOH . 
D 4 HOH F 20 520 20 HOH HOH . 
D 4 HOH F 21 521 21 HOH HOH . 
D 4 HOH F 22 522 22 HOH HOH . 
D 4 HOH F 23 523 23 HOH HOH . 
D 4 HOH F 24 524 24 HOH HOH . 
D 4 HOH F 25 525 25 HOH HOH . 
D 4 HOH F 26 526 26 HOH HOH . 
D 4 HOH F 27 527 27 HOH HOH . 
D 4 HOH F 28 528 28 HOH HOH . 
D 4 HOH F 29 529 29 HOH HOH . 
D 4 HOH F 30 530 30 HOH HOH . 
D 4 HOH F 31 531 31 HOH HOH . 
D 4 HOH F 32 532 32 HOH HOH . 
D 4 HOH F 33 533 33 HOH HOH . 
D 4 HOH F 34 534 34 HOH HOH . 
D 4 HOH F 35 535 35 HOH HOH . 
D 4 HOH F 36 536 36 HOH HOH . 
D 4 HOH F 37 537 37 HOH HOH . 
D 4 HOH F 38 538 38 HOH HOH . 
D 4 HOH F 39 539 39 HOH HOH . 
D 4 HOH F 40 540 40 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAU 1MV . . . C 3 9.336 70.937 25.514 1 72.17 ? OAU 1MV 402 F 1 
HETATM 2 P PAS 1MV . . . C 3 8.892 71.285 26.915 1 96.01 ? PAS 1MV 402 F 1 
HETATM 3 O OAV 1MV . . . C 3 9.784 70.602 28.167 1 78.07 ? OAV 1MV 402 F 1 
HETATM 4 O OAW 1MV . . . C 3 8.631 72.723 27.239 1 100.2 ? OAW 1MV 402 F 1 
HETATM 5 C CAR 1MV . . . C 3 7.229 70.538 26.875 1 97.19 ? CAR 1MV 402 F 1 
HETATM 6 P PAT 1MV . . . C 3 6.885 70.059 25.056 1 100.01 ? PAT 1MV 402 F 1 
HETATM 7 O OAX 1MV . . . C 3 7.536 71.293 24.447 1 74.55 ? OAX 1MV 402 F 1 
HETATM 8 O OAZ 1MV . . . C 3 5.29 69.904 24.759 1 95.89 ? OAZ 1MV 402 F 1 
HETATM 9 O OAY 1MV . . . C 3 7.43 68.695 24.774 1 105.47 ? OAY 1MV 402 F 1 
HETATM 10 N NAJ 1MV . . . C 3 6.309 71.608 27.322 1 86.46 ? NAJ 1MV 402 F 1 
HETATM 11 C C4 1MV . . . C 3 5.157 71.293 27.883 1 88.2 ? C4 1MV 402 F 1 
HETATM 12 N N3 1MV . . . C 3 4.931 69.988 28.149 1 86.67 ? N3 1MV 402 F 1 
HETATM 13 C C2 1MV . . . C 3 3.734 69.62 28.736 1 93.58 ? C2 1MV 402 F 1 
HETATM 14 N N1 1MV . . . C 3 2.844 70.645 29.036 1 84.87 ? N1 1MV 402 F 1 
HETATM 15 C C6 1MV . . . C 3 3.151 71.931 28.766 1 78.85 ? C6 1MV 402 F 1 
HETATM 16 S SAE 1MV . . . C 3 2.284 73.262 29.026 1 72.35 ? SAE 1MV 402 F 1 
HETATM 17 C C5 1MV . . . C 3 4.308 72.302 28.179 1 83.43 ? C5 1MV 402 F 1 
HETATM 18 C CAC 1MV . . . C 3 4.431 73.666 27.982 1 77.99 ? CAC 1MV 402 F 1 
HETATM 19 C CAD 1MV . . . C 3 3.376 74.406 28.396 1 81.34 ? CAD 1MV 402 F 1 
HETATM 20 C CAK 1MV . . . C 3 3.212 75.778 28.325 1 71.48 ? CAK 1MV 402 F 1 
HETATM 21 C CAL 1MV . . . C 3 4.289 76.69 28.321 1 64.82 ? CAL 1MV 402 F 1 
HETATM 22 C CAM 1MV . . . C 3 4.118 78.072 28.216 1 59.8 ? CAM 1MV 402 F 1 
HETATM 23 C CAN 1MV . . . C 3 2.851 78.608 28.126 1 64.27 ? CAN 1MV 402 F 1 
HETATM 24 C CAQ 1MV . . . C 3 2.669 79.996 28.042 1 64.54 ? CAQ 1MV 402 F 1 
HETATM 25 C CAO 1MV . . . C 3 1.768 77.734 28.113 1 60.54 ? CAO 1MV 402 F 1 
HETATM 26 C CAP 1MV . . . C 3 1.948 76.347 28.213 1 59.9 ? CAP 1MV 402 F 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#