data_4LPK # _model_server_result.job_id pr5URNsst1729BkO0pIHnw _model_server_result.datetime_utc '2024-11-22 15:41:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lpk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 4LPK # _exptl.entry_id 4LPK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LPK _cell.length_a 84.282 _cell.length_b 84.282 _cell.length_c 41.267 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LPK _symmetry.cell_setting ? _symmetry.Int_Tables_number 143 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 18 A SER 17 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 A OE1 GLU 38 A GLU 37 1_555 E NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc3 A O ALA 60 A ALA 59 1_555 E NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc4 C O3B GDP . A GDP 201 1_555 D CA CA . A CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc5 D CA CA . A CA 202 1_555 I O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 D CA CA . A CA 202 1_555 I O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc7 D CA CA . A CA 202 1_555 I O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc8 D CA CA . A CA 202 1_555 I O HOH . A HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc9 E NA NA . A NA 203 1_555 I O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc10 E NA NA . A NA 203 1_555 I O HOH . A HOH 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc11 E NA NA . A NA 203 1_555 I O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc12 B OG SER 18 B SER 17 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc13 F O1B GDP . B GDP 201 1_555 G CA CA . B CA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc14 G CA CA . B CA 202 1_555 J O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc15 G CA CA . B CA 202 1_555 J O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.419 ? metalc ? metalc16 G CA CA . B CA 202 1_555 J O HOH . B HOH 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc17 G CA CA . B CA 202 1_555 J O HOH . B HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc18 H NA NA . B NA 203 1_555 J O HOH . B HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc19 H NA NA . B NA 203 1_555 J O HOH . B HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 83 n n PB O2B GDP sing 84 n n PB O3B GDP sing 85 n n PB O3A GDP sing 86 n n O2B HOB2 GDP sing 87 n n O3B HOB3 GDP sing 88 n n O3A PA GDP sing 89 n n PA O1A GDP doub 90 n n PA O2A GDP sing 91 n n PA O5' GDP sing 92 n n O2A HOA2 GDP sing 93 n n O5' C5' GDP sing 94 n n C5' C4' GDP sing 95 n n C5' H5' GDP sing 96 n n C5' "H5''" GDP sing 97 n n C4' O4' GDP sing 98 n n C4' C3' GDP sing 99 n n C4' H4' GDP sing 100 n n O4' C1' GDP sing 101 n n C3' O3' GDP sing 102 n n C3' C2' GDP sing 103 n n C3' H3' GDP sing 104 n n O3' HO3' GDP sing 105 n n C2' O2' GDP sing 106 n n C2' C1' GDP sing 107 n n C2' H2' GDP sing 108 n n O2' HO2' GDP sing 109 n n C1' N9 GDP sing 110 n n C1' H1' GDP sing 111 n n N9 C8 GDP sing 112 n y N9 C4 GDP sing 113 n y C8 N7 GDP doub 114 n y C8 H8 GDP sing 115 n n N7 C5 GDP sing 116 n y C5 C6 GDP sing 117 n n C5 C4 GDP doub 118 n y C6 O6 GDP doub 119 n n C6 N1 GDP sing 120 n n N1 C2 GDP sing 121 n n N1 HN1 GDP sing 122 n n C2 N2 GDP sing 123 n n C2 N3 GDP doub 124 n n N2 HN21 GDP sing 125 n n N2 HN22 GDP sing 126 n n N3 C4 GDP sing 127 n n # _atom_sites.entry_id 4LPK _atom_sites.fract_transf_matrix[1][1] 0.011865 _atom_sites.fract_transf_matrix[1][2] 0.00685 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0137 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 220 GDP GDP . D 3 CA A 1 202 200 CA CA . E 4 NA A 1 203 205 NA NA . F 2 GDP B 1 201 220 GDP GDP . G 3 CA B 1 202 200 CA CA . H 4 NA B 1 203 205 NA NA . I 5 HOH A 1 301 2 HOH HOH . I 5 HOH A 2 302 6 HOH HOH . I 5 HOH A 3 303 9 HOH HOH . I 5 HOH A 4 304 10 HOH HOH . I 5 HOH A 5 305 12 HOH HOH . I 5 HOH A 6 306 15 HOH HOH . I 5 HOH A 7 307 16 HOH HOH . I 5 HOH A 8 308 308 HOH HOH . I 5 HOH A 9 309 18 HOH HOH . I 5 HOH A 10 310 19 HOH HOH . I 5 HOH A 11 311 20 HOH HOH . I 5 HOH A 12 312 22 HOH HOH . I 5 HOH A 13 313 23 HOH HOH . I 5 HOH A 14 314 24 HOH HOH . I 5 HOH A 15 315 26 HOH HOH . I 5 HOH A 16 316 27 HOH HOH . I 5 HOH A 17 317 30 HOH HOH . I 5 HOH A 18 318 34 HOH HOH . I 5 HOH A 19 319 320 HOH HOH . I 5 HOH A 20 320 39 HOH HOH . I 5 HOH A 21 321 42 HOH HOH . I 5 HOH A 22 322 43 HOH HOH . I 5 HOH A 23 323 48 HOH HOH . I 5 HOH A 24 324 49 HOH HOH . I 5 HOH A 25 325 51 HOH HOH . I 5 HOH A 26 326 53 HOH HOH . I 5 HOH A 27 327 56 HOH HOH . I 5 HOH A 28 328 62 HOH HOH . I 5 HOH A 29 329 65 HOH HOH . I 5 HOH A 30 330 68 HOH HOH . I 5 HOH A 31 331 72 HOH HOH . I 5 HOH A 32 332 75 HOH HOH . I 5 HOH A 33 333 77 HOH HOH . I 5 HOH A 34 334 82 HOH HOH . I 5 HOH A 35 335 84 HOH HOH . I 5 HOH A 36 336 85 HOH HOH . I 5 HOH A 37 337 86 HOH HOH . I 5 HOH A 38 338 89 HOH HOH . I 5 HOH A 39 339 95 HOH HOH . I 5 HOH A 40 340 96 HOH HOH . I 5 HOH A 41 341 99 HOH HOH . I 5 HOH A 42 342 101 HOH HOH . I 5 HOH A 43 343 104 HOH HOH . I 5 HOH A 44 344 108 HOH HOH . I 5 HOH A 45 345 113 HOH HOH . I 5 HOH A 46 346 114 HOH HOH . I 5 HOH A 47 347 115 HOH HOH . I 5 HOH A 48 348 116 HOH HOH . I 5 HOH A 49 349 119 HOH HOH . I 5 HOH A 50 350 121 HOH HOH . I 5 HOH A 51 351 122 HOH HOH . I 5 HOH A 52 352 125 HOH HOH . I 5 HOH A 53 353 126 HOH HOH . I 5 HOH A 54 354 127 HOH HOH . I 5 HOH A 55 355 128 HOH HOH . I 5 HOH A 56 356 129 HOH HOH . I 5 HOH A 57 357 132 HOH HOH . I 5 HOH A 58 358 134 HOH HOH . I 5 HOH A 59 359 137 HOH HOH . I 5 HOH A 60 360 140 HOH HOH . I 5 HOH A 61 361 142 HOH HOH . I 5 HOH A 62 362 143 HOH HOH . I 5 HOH A 63 363 144 HOH HOH . I 5 HOH A 64 364 145 HOH HOH . I 5 HOH A 65 365 147 HOH HOH . I 5 HOH A 66 366 149 HOH HOH . I 5 HOH A 67 367 150 HOH HOH . I 5 HOH A 68 368 151 HOH HOH . I 5 HOH A 69 369 152 HOH HOH . I 5 HOH A 70 370 155 HOH HOH . I 5 HOH A 71 371 157 HOH HOH . I 5 HOH A 72 372 159 HOH HOH . I 5 HOH A 73 373 160 HOH HOH . I 5 HOH A 74 374 164 HOH HOH . I 5 HOH A 75 375 165 HOH HOH . I 5 HOH A 76 376 166 HOH HOH . I 5 HOH A 77 377 168 HOH HOH . I 5 HOH A 78 378 169 HOH HOH . I 5 HOH A 79 379 170 HOH HOH . I 5 HOH A 80 380 171 HOH HOH . I 5 HOH A 81 381 172 HOH HOH . I 5 HOH A 82 382 173 HOH HOH . I 5 HOH A 83 383 176 HOH HOH . I 5 HOH A 84 384 178 HOH HOH . I 5 HOH A 85 385 179 HOH HOH . I 5 HOH A 86 386 180 HOH HOH . I 5 HOH A 87 387 182 HOH HOH . I 5 HOH A 88 388 183 HOH HOH . I 5 HOH A 89 389 185 HOH HOH . I 5 HOH A 90 390 189 HOH HOH . I 5 HOH A 91 391 190 HOH HOH . I 5 HOH A 92 392 192 HOH HOH . I 5 HOH A 93 393 193 HOH HOH . I 5 HOH A 94 394 194 HOH HOH . I 5 HOH A 95 395 198 HOH HOH . I 5 HOH A 96 396 200 HOH HOH . I 5 HOH A 97 397 201 HOH HOH . I 5 HOH A 98 398 204 HOH HOH . I 5 HOH A 99 399 205 HOH HOH . I 5 HOH A 100 400 206 HOH HOH . I 5 HOH A 101 401 207 HOH HOH . I 5 HOH A 102 402 211 HOH HOH . I 5 HOH A 103 403 212 HOH HOH . I 5 HOH A 104 404 215 HOH HOH . I 5 HOH A 105 405 216 HOH HOH . I 5 HOH A 106 406 219 HOH HOH . I 5 HOH A 107 407 220 HOH HOH . I 5 HOH A 108 408 221 HOH HOH . I 5 HOH A 109 409 222 HOH HOH . I 5 HOH A 110 410 223 HOH HOH . I 5 HOH A 111 411 225 HOH HOH . I 5 HOH A 112 412 226 HOH HOH . I 5 HOH A 113 413 227 HOH HOH . I 5 HOH A 114 414 228 HOH HOH . I 5 HOH A 115 415 230 HOH HOH . I 5 HOH A 116 416 231 HOH HOH . I 5 HOH A 117 417 232 HOH HOH . I 5 HOH A 118 418 234 HOH HOH . I 5 HOH A 119 419 236 HOH HOH . I 5 HOH A 120 420 238 HOH HOH . I 5 HOH A 121 421 239 HOH HOH . I 5 HOH A 122 422 240 HOH HOH . I 5 HOH A 123 423 244 HOH HOH . I 5 HOH A 124 424 245 HOH HOH . I 5 HOH A 125 425 247 HOH HOH . I 5 HOH A 126 426 250 HOH HOH . I 5 HOH A 127 427 254 HOH HOH . I 5 HOH A 128 428 255 HOH HOH . I 5 HOH A 129 429 257 HOH HOH . I 5 HOH A 130 430 260 HOH HOH . I 5 HOH A 131 431 265 HOH HOH . I 5 HOH A 132 432 268 HOH HOH . I 5 HOH A 133 433 270 HOH HOH . I 5 HOH A 134 434 271 HOH HOH . I 5 HOH A 135 435 278 HOH HOH . I 5 HOH A 136 436 280 HOH HOH . I 5 HOH A 137 437 282 HOH HOH . I 5 HOH A 138 438 284 HOH HOH . I 5 HOH A 139 439 286 HOH HOH . I 5 HOH A 140 440 287 HOH HOH . I 5 HOH A 141 441 288 HOH HOH . I 5 HOH A 142 442 289 HOH HOH . I 5 HOH A 143 443 293 HOH HOH . I 5 HOH A 144 444 295 HOH HOH . I 5 HOH A 145 445 296 HOH HOH . I 5 HOH A 146 446 301 HOH HOH . I 5 HOH A 147 447 309 HOH HOH . I 5 HOH A 148 448 311 HOH HOH . I 5 HOH A 149 449 315 HOH HOH . I 5 HOH A 150 450 317 HOH HOH . I 5 HOH A 151 451 318 HOH HOH . I 5 HOH A 152 452 319 HOH HOH . I 5 HOH A 153 453 320 HOH HOH . I 5 HOH A 154 454 325 HOH HOH . I 5 HOH A 155 455 328 HOH HOH . I 5 HOH A 156 456 336 HOH HOH . I 5 HOH A 157 457 341 HOH HOH . I 5 HOH A 158 458 343 HOH HOH . I 5 HOH A 159 459 346 HOH HOH . I 5 HOH A 160 460 349 HOH HOH . I 5 HOH A 161 461 352 HOH HOH . I 5 HOH A 162 462 353 HOH HOH . I 5 HOH A 163 463 354 HOH HOH . I 5 HOH A 164 464 355 HOH HOH . I 5 HOH A 165 465 359 HOH HOH . I 5 HOH A 166 466 360 HOH HOH . I 5 HOH A 167 467 361 HOH HOH . I 5 HOH A 168 468 362 HOH HOH . I 5 HOH A 169 469 363 HOH HOH . I 5 HOH A 170 470 369 HOH HOH . I 5 HOH A 171 471 370 HOH HOH . I 5 HOH A 172 472 371 HOH HOH . I 5 HOH A 173 473 372 HOH HOH . I 5 HOH A 174 474 375 HOH HOH . I 5 HOH A 175 475 376 HOH HOH . I 5 HOH A 176 476 378 HOH HOH . I 5 HOH A 177 477 381 HOH HOH . I 5 HOH A 178 478 384 HOH HOH . I 5 HOH A 179 479 385 HOH HOH . J 5 HOH B 1 301 25 HOH HOH . J 5 HOH B 2 302 1 HOH HOH . J 5 HOH B 3 303 3 HOH HOH . J 5 HOH B 4 304 4 HOH HOH . J 5 HOH B 5 305 5 HOH HOH . J 5 HOH B 6 306 7 HOH HOH . J 5 HOH B 7 307 8 HOH HOH . J 5 HOH B 8 308 11 HOH HOH . J 5 HOH B 9 309 13 HOH HOH . J 5 HOH B 10 310 14 HOH HOH . J 5 HOH B 11 311 21 HOH HOH . J 5 HOH B 12 312 28 HOH HOH . J 5 HOH B 13 313 29 HOH HOH . J 5 HOH B 14 314 31 HOH HOH . J 5 HOH B 15 315 32 HOH HOH . J 5 HOH B 16 316 33 HOH HOH . J 5 HOH B 17 317 35 HOH HOH . J 5 HOH B 18 318 36 HOH HOH . J 5 HOH B 19 319 38 HOH HOH . J 5 HOH B 20 320 40 HOH HOH . J 5 HOH B 21 321 41 HOH HOH . J 5 HOH B 22 322 44 HOH HOH . J 5 HOH B 23 323 45 HOH HOH . J 5 HOH B 24 324 46 HOH HOH . J 5 HOH B 25 325 47 HOH HOH . J 5 HOH B 26 326 50 HOH HOH . J 5 HOH B 27 327 52 HOH HOH . J 5 HOH B 28 328 54 HOH HOH . J 5 HOH B 29 329 55 HOH HOH . J 5 HOH B 30 330 57 HOH HOH . J 5 HOH B 31 331 58 HOH HOH . J 5 HOH B 32 332 59 HOH HOH . J 5 HOH B 33 333 60 HOH HOH . J 5 HOH B 34 334 61 HOH HOH . J 5 HOH B 35 335 63 HOH HOH . J 5 HOH B 36 336 64 HOH HOH . J 5 HOH B 37 337 66 HOH HOH . J 5 HOH B 38 338 67 HOH HOH . J 5 HOH B 39 339 69 HOH HOH . J 5 HOH B 40 340 70 HOH HOH . J 5 HOH B 41 341 71 HOH HOH . J 5 HOH B 42 342 73 HOH HOH . J 5 HOH B 43 343 74 HOH HOH . J 5 HOH B 44 344 76 HOH HOH . J 5 HOH B 45 345 78 HOH HOH . J 5 HOH B 46 346 79 HOH HOH . J 5 HOH B 47 347 80 HOH HOH . J 5 HOH B 48 348 81 HOH HOH . J 5 HOH B 49 349 83 HOH HOH . J 5 HOH B 50 350 87 HOH HOH . J 5 HOH B 51 351 88 HOH HOH . J 5 HOH B 52 352 90 HOH HOH . J 5 HOH B 53 353 91 HOH HOH . J 5 HOH B 54 354 92 HOH HOH . J 5 HOH B 55 355 93 HOH HOH . J 5 HOH B 56 356 94 HOH HOH . J 5 HOH B 57 357 97 HOH HOH . J 5 HOH B 58 358 98 HOH HOH . J 5 HOH B 59 359 100 HOH HOH . J 5 HOH B 60 360 102 HOH HOH . J 5 HOH B 61 361 103 HOH HOH . J 5 HOH B 62 362 105 HOH HOH . J 5 HOH B 63 363 106 HOH HOH . J 5 HOH B 64 364 107 HOH HOH . J 5 HOH B 65 365 109 HOH HOH . J 5 HOH B 66 366 110 HOH HOH . J 5 HOH B 67 367 111 HOH HOH . J 5 HOH B 68 368 112 HOH HOH . J 5 HOH B 69 369 117 HOH HOH . J 5 HOH B 70 370 118 HOH HOH . J 5 HOH B 71 371 120 HOH HOH . J 5 HOH B 72 372 123 HOH HOH . J 5 HOH B 73 373 124 HOH HOH . J 5 HOH B 74 374 130 HOH HOH . J 5 HOH B 75 375 131 HOH HOH . J 5 HOH B 76 376 133 HOH HOH . J 5 HOH B 77 377 135 HOH HOH . J 5 HOH B 78 378 136 HOH HOH . J 5 HOH B 79 379 138 HOH HOH . J 5 HOH B 80 380 139 HOH HOH . J 5 HOH B 81 381 141 HOH HOH . J 5 HOH B 82 382 146 HOH HOH . J 5 HOH B 83 383 148 HOH HOH . J 5 HOH B 84 384 153 HOH HOH . J 5 HOH B 85 385 154 HOH HOH . J 5 HOH B 86 386 156 HOH HOH . J 5 HOH B 87 387 158 HOH HOH . J 5 HOH B 88 388 161 HOH HOH . J 5 HOH B 89 389 162 HOH HOH . J 5 HOH B 90 390 163 HOH HOH . J 5 HOH B 91 391 167 HOH HOH . J 5 HOH B 92 392 174 HOH HOH . J 5 HOH B 93 393 175 HOH HOH . J 5 HOH B 94 394 177 HOH HOH . J 5 HOH B 95 395 181 HOH HOH . J 5 HOH B 96 396 184 HOH HOH . J 5 HOH B 97 397 186 HOH HOH . J 5 HOH B 98 398 187 HOH HOH . J 5 HOH B 99 399 188 HOH HOH . J 5 HOH B 100 400 191 HOH HOH . J 5 HOH B 101 401 195 HOH HOH . J 5 HOH B 102 402 196 HOH HOH . J 5 HOH B 103 403 197 HOH HOH . J 5 HOH B 104 404 199 HOH HOH . J 5 HOH B 105 405 202 HOH HOH . J 5 HOH B 106 406 203 HOH HOH . J 5 HOH B 107 407 208 HOH HOH . J 5 HOH B 108 408 209 HOH HOH . J 5 HOH B 109 409 210 HOH HOH . J 5 HOH B 110 410 213 HOH HOH . J 5 HOH B 111 411 214 HOH HOH . J 5 HOH B 112 412 217 HOH HOH . J 5 HOH B 113 413 218 HOH HOH . J 5 HOH B 114 414 224 HOH HOH . J 5 HOH B 115 415 229 HOH HOH . J 5 HOH B 116 416 233 HOH HOH . J 5 HOH B 117 417 235 HOH HOH . J 5 HOH B 118 418 237 HOH HOH . J 5 HOH B 119 419 241 HOH HOH . J 5 HOH B 120 420 242 HOH HOH . J 5 HOH B 121 421 243 HOH HOH . J 5 HOH B 122 422 246 HOH HOH . J 5 HOH B 123 423 248 HOH HOH . J 5 HOH B 124 424 249 HOH HOH . J 5 HOH B 125 425 251 HOH HOH . J 5 HOH B 126 426 252 HOH HOH . J 5 HOH B 127 427 253 HOH HOH . J 5 HOH B 128 428 256 HOH HOH . J 5 HOH B 129 429 258 HOH HOH . J 5 HOH B 130 430 259 HOH HOH . J 5 HOH B 131 431 261 HOH HOH . J 5 HOH B 132 432 262 HOH HOH . J 5 HOH B 133 433 263 HOH HOH . J 5 HOH B 134 434 264 HOH HOH . J 5 HOH B 135 435 266 HOH HOH . J 5 HOH B 136 436 267 HOH HOH . J 5 HOH B 137 437 269 HOH HOH . J 5 HOH B 138 438 272 HOH HOH . J 5 HOH B 139 439 273 HOH HOH . J 5 HOH B 140 440 274 HOH HOH . J 5 HOH B 141 441 275 HOH HOH . J 5 HOH B 142 442 276 HOH HOH . J 5 HOH B 143 443 277 HOH HOH . J 5 HOH B 144 444 279 HOH HOH . J 5 HOH B 145 445 281 HOH HOH . J 5 HOH B 146 446 283 HOH HOH . J 5 HOH B 147 447 285 HOH HOH . J 5 HOH B 148 448 290 HOH HOH . J 5 HOH B 149 449 291 HOH HOH . J 5 HOH B 150 450 292 HOH HOH . J 5 HOH B 151 451 294 HOH HOH . J 5 HOH B 152 452 297 HOH HOH . J 5 HOH B 153 453 298 HOH HOH . J 5 HOH B 154 454 299 HOH HOH . J 5 HOH B 155 455 300 HOH HOH . J 5 HOH B 156 456 302 HOH HOH . J 5 HOH B 157 457 303 HOH HOH . J 5 HOH B 158 458 304 HOH HOH . J 5 HOH B 159 459 305 HOH HOH . J 5 HOH B 160 460 306 HOH HOH . J 5 HOH B 161 461 307 HOH HOH . J 5 HOH B 162 462 308 HOH HOH . J 5 HOH B 163 463 310 HOH HOH . J 5 HOH B 164 464 312 HOH HOH . J 5 HOH B 165 465 313 HOH HOH . J 5 HOH B 166 466 314 HOH HOH . J 5 HOH B 167 467 316 HOH HOH . J 5 HOH B 168 468 321 HOH HOH . J 5 HOH B 169 469 322 HOH HOH . J 5 HOH B 170 470 323 HOH HOH . J 5 HOH B 171 471 324 HOH HOH . J 5 HOH B 172 472 326 HOH HOH . J 5 HOH B 173 473 327 HOH HOH . J 5 HOH B 174 474 329 HOH HOH . J 5 HOH B 175 475 330 HOH HOH . J 5 HOH B 176 476 331 HOH HOH . J 5 HOH B 177 477 332 HOH HOH . J 5 HOH B 178 478 333 HOH HOH . J 5 HOH B 179 479 334 HOH HOH . J 5 HOH B 180 480 335 HOH HOH . J 5 HOH B 181 481 337 HOH HOH . J 5 HOH B 182 482 338 HOH HOH . J 5 HOH B 183 483 339 HOH HOH . J 5 HOH B 184 484 340 HOH HOH . J 5 HOH B 185 485 342 HOH HOH . J 5 HOH B 186 486 344 HOH HOH . J 5 HOH B 187 487 345 HOH HOH . J 5 HOH B 188 488 347 HOH HOH . J 5 HOH B 189 489 348 HOH HOH . J 5 HOH B 190 490 350 HOH HOH . J 5 HOH B 191 491 351 HOH HOH . J 5 HOH B 192 492 356 HOH HOH . J 5 HOH B 193 493 357 HOH HOH . J 5 HOH B 194 494 358 HOH HOH . J 5 HOH B 195 495 364 HOH HOH . J 5 HOH B 196 496 365 HOH HOH . J 5 HOH B 197 497 366 HOH HOH . J 5 HOH B 198 498 367 HOH HOH . J 5 HOH B 199 499 368 HOH HOH . J 5 HOH B 200 500 373 HOH HOH . J 5 HOH B 201 501 374 HOH HOH . J 5 HOH B 202 502 377 HOH HOH . J 5 HOH B 203 503 379 HOH HOH . J 5 HOH B 204 504 380 HOH HOH . J 5 HOH B 205 505 382 HOH HOH . J 5 HOH B 206 506 383 HOH HOH . J 5 HOH B 207 507 386 HOH HOH . J 5 HOH B 208 508 387 HOH HOH . J 5 HOH B 209 509 388 HOH HOH . J 5 HOH B 210 510 389 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . F 2 26.6 -19.733 5.536 1 29.9 ? PB GDP 201 B 1 HETATM 2 O O1B GDP . . . F 2 25.232 -19.55 6.143 1 30.85 ? O1B GDP 201 B 1 HETATM 3 O O2B GDP . . . F 2 27.572 -20.214 6.582 1 30.24 ? O2B GDP 201 B 1 HETATM 4 O O3B GDP . . . F 2 26.538 -20.755 4.432 1 29.69 ? O3B GDP 201 B 1 HETATM 5 O O3A GDP . . . F 2 27.132 -18.344 4.923 1 31.05 ? O3A GDP 201 B 1 HETATM 6 P PA GDP . . . F 2 26.445 -16.928 5.267 1 29.34 ? PA GDP 201 B 1 HETATM 7 O O1A GDP . . . F 2 26.357 -16.723 6.759 1 31.65 ? O1A GDP 201 B 1 HETATM 8 O O2A GDP . . . F 2 25.091 -16.802 4.615 1 29.09 ? O2A GDP 201 B 1 HETATM 9 O O5' GDP . . . F 2 27.501 -15.903 4.625 1 30.08 ? O5' GDP 201 B 1 HETATM 10 C C5' GDP . . . F 2 28.722 -15.634 5.312 1 28.49 ? C5' GDP 201 B 1 HETATM 11 C C4' GDP . . . F 2 29.44 -14.494 4.614 1 29.46 ? C4' GDP 201 B 1 HETATM 12 O O4' GDP . . . F 2 29.363 -14.689 3.2 1 30.8 ? O4' GDP 201 B 1 HETATM 13 C C3' GDP . . . F 2 28.8 -13.153 4.93 1 30.01 ? C3' GDP 201 B 1 HETATM 14 O O3' GDP . . . F 2 29.827 -12.222 5.282 1 28.77 ? O3' GDP 201 B 1 HETATM 15 C C2' GDP . . . F 2 28.088 -12.755 3.652 1 29.75 ? C2' GDP 201 B 1 HETATM 16 O O2' GDP . . . F 2 28.12 -11.343 3.43 1 30.83 ? O2' GDP 201 B 1 HETATM 17 C C1' GDP . . . F 2 28.852 -13.509 2.577 1 30.66 ? C1' GDP 201 B 1 HETATM 18 N N9 GDP . . . F 2 27.997 -13.849 1.418 1 29.21 ? N9 GDP 201 B 1 HETATM 19 C C8 GDP . . . F 2 26.983 -14.734 1.378 1 29.46 ? C8 GDP 201 B 1 HETATM 20 N N7 GDP . . . F 2 26.449 -14.778 0.129 1 28.79 ? N7 GDP 201 B 1 HETATM 21 C C5 GDP . . . F 2 27.135 -13.914 -0.643 1 28.57 ? C5 GDP 201 B 1 HETATM 22 C C6 GDP . . . F 2 27.106 -13.463 -2.053 1 28.86 ? C6 GDP 201 B 1 HETATM 23 O O6 GDP . . . F 2 26.27 -13.927 -2.853 1 30.27 ? O6 GDP 201 B 1 HETATM 24 N N1 GDP . . . F 2 28.002 -12.547 -2.444 1 28.51 ? N1 GDP 201 B 1 HETATM 25 C C2 GDP . . . F 2 28.92 -12.024 -1.611 1 29.47 ? C2 GDP 201 B 1 HETATM 26 N N2 GDP . . . F 2 29.793 -11.099 -2.085 1 31.04 ? N2 GDP 201 B 1 HETATM 27 N N3 GDP . . . F 2 29.005 -12.39 -0.308 1 28.97 ? N3 GDP 201 B 1 HETATM 28 C C4 GDP . . . F 2 28.157 -13.309 0.214 1 29.05 ? C4 GDP 201 B 1 HETATM 29 H H5' GDP . . . F 2 28.513 -15.363 6.349 1 34.18 ? H5' GDP 201 B 1 HETATM 30 H "H5''" GDP . . . F 2 29.352 -16.526 5.311 1 34.18 ? "H5''" GDP 201 B 1 HETATM 31 H H4' GDP . . . F 2 30.49 -14.477 4.939 1 35.35 ? H4' GDP 201 B 1 HETATM 32 H H3' GDP . . . F 2 28.072 -13.269 5.744 1 36.02 ? H3' GDP 201 B 1 HETATM 33 H HO3' GDP . . . F 2 29.428 -11.367 5.495 1 34.52 ? HO3' GDP 201 B 1 HETATM 34 H H2' GDP . . . F 2 27.052 -13.118 3.685 1 35.7 ? H2' GDP 201 B 1 HETATM 35 H HO2' GDP . . . F 2 27.678 -10.891 4.162 1 37 ? HO2' GDP 201 B 1 HETATM 36 H H1' GDP . . . F 2 29.688 -12.88 2.243 1 36.79 ? H1' GDP 201 B 1 HETATM 37 H H8 GDP . . . F 2 26.638 -15.32 2.221 1 35.35 ? H8 GDP 201 B 1 HETATM 38 H HN1 GDP . . . F 2 27.987 -12.225 -3.433 1 34.21 ? HN1 GDP 201 B 1 HETATM 39 H HN21 GDP . . . F 2 30.488 -10.699 -1.471 1 37.25 ? HN21 GDP 201 B 1 HETATM 40 H HN22 GDP . . . F 2 29.748 -10.812 -3.052 1 37.25 ? HN22 GDP 201 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 40 #