data_4LPY # _model_server_result.job_id SdfHKcthmZetc9xdvoVPdg _model_server_result.datetime_utc '2025-09-30 14:15:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lpy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 4LPY # _exptl.entry_id 4LPY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LPY _cell.length_a 80.34 _cell.length_b 80.34 _cell.length_c 73.52 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LPY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O MET 79 B MET 79 4_555 C NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc2 B O LEU 81 B LEU 81 1_555 C NA NA . B NA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc3 C NA NA . B NA 1001 1_555 E O HOH . B HOH 1110 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 C NA NA . B NA 1001 1_555 E O HOH . B HOH 1146 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc5 C NA NA . B NA 1001 1_555 E O HOH . B HOH 1183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc6 C NA NA . B NA 1001 1_555 E O HOH . B HOH 1192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LPY _atom_sites.fract_transf_matrix[1][1] 0.012447 _atom_sites.fract_transf_matrix[1][2] 0.007186 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014373 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013602 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA B 1 1001 1001 NA NA . D 3 HOH A 1 201 1 HOH HOH . D 3 HOH A 2 202 4 HOH HOH . D 3 HOH A 3 203 8 HOH HOH . D 3 HOH A 4 204 9 HOH HOH . D 3 HOH A 5 205 12 HOH HOH . D 3 HOH A 6 206 14 HOH HOH . D 3 HOH A 7 207 15 HOH HOH . D 3 HOH A 8 208 16 HOH HOH . D 3 HOH A 9 209 21 HOH HOH . D 3 HOH A 10 210 27 HOH HOH . D 3 HOH A 11 211 28 HOH HOH . D 3 HOH A 12 212 30 HOH HOH . D 3 HOH A 13 213 33 HOH HOH . D 3 HOH A 14 214 34 HOH HOH . D 3 HOH A 15 215 35 HOH HOH . D 3 HOH A 16 216 39 HOH HOH . D 3 HOH A 17 217 41 HOH HOH . D 3 HOH A 18 218 42 HOH HOH . D 3 HOH A 19 219 48 HOH HOH . D 3 HOH A 20 220 51 HOH HOH . D 3 HOH A 21 221 54 HOH HOH . D 3 HOH A 22 222 61 HOH HOH . D 3 HOH A 23 223 63 HOH HOH . D 3 HOH A 24 224 64 HOH HOH . D 3 HOH A 25 225 67 HOH HOH . D 3 HOH A 26 226 68 HOH HOH . D 3 HOH A 27 227 69 HOH HOH . D 3 HOH A 28 228 70 HOH HOH . D 3 HOH A 29 229 73 HOH HOH . D 3 HOH A 30 230 74 HOH HOH . D 3 HOH A 31 231 75 HOH HOH . D 3 HOH A 32 232 77 HOH HOH . D 3 HOH A 33 233 80 HOH HOH . D 3 HOH A 34 234 81 HOH HOH . D 3 HOH A 35 235 82 HOH HOH . D 3 HOH A 36 236 83 HOH HOH . D 3 HOH A 37 237 84 HOH HOH . D 3 HOH A 38 238 85 HOH HOH . D 3 HOH A 39 239 86 HOH HOH . D 3 HOH A 40 240 90 HOH HOH . D 3 HOH A 41 241 91 HOH HOH . D 3 HOH A 42 242 92 HOH HOH . D 3 HOH A 43 243 93 HOH HOH . D 3 HOH A 44 244 97 HOH HOH . D 3 HOH A 45 245 98 HOH HOH . D 3 HOH A 46 246 99 HOH HOH . D 3 HOH A 47 247 101 HOH HOH . D 3 HOH A 48 248 104 HOH HOH . D 3 HOH A 49 249 105 HOH HOH . D 3 HOH A 50 250 109 HOH HOH . D 3 HOH A 51 251 111 HOH HOH . D 3 HOH A 52 252 112 HOH HOH . D 3 HOH A 53 253 113 HOH HOH . D 3 HOH A 54 254 116 HOH HOH . D 3 HOH A 55 255 117 HOH HOH . D 3 HOH A 56 256 119 HOH HOH . D 3 HOH A 57 257 120 HOH HOH . D 3 HOH A 58 258 122 HOH HOH . D 3 HOH A 59 259 123 HOH HOH . D 3 HOH A 60 260 130 HOH HOH . D 3 HOH A 61 261 132 HOH HOH . D 3 HOH A 62 262 133 HOH HOH . D 3 HOH A 63 263 135 HOH HOH . D 3 HOH A 64 264 136 HOH HOH . D 3 HOH A 65 265 139 HOH HOH . D 3 HOH A 66 266 140 HOH HOH . D 3 HOH A 67 267 142 HOH HOH . D 3 HOH A 68 268 143 HOH HOH . D 3 HOH A 69 269 146 HOH HOH . D 3 HOH A 70 270 147 HOH HOH . D 3 HOH A 71 271 150 HOH HOH . D 3 HOH A 72 272 152 HOH HOH . D 3 HOH A 73 273 153 HOH HOH . D 3 HOH A 74 274 154 HOH HOH . D 3 HOH A 75 275 156 HOH HOH . D 3 HOH A 76 276 161 HOH HOH . D 3 HOH A 77 277 162 HOH HOH . D 3 HOH A 78 278 165 HOH HOH . D 3 HOH A 79 279 169 HOH HOH . D 3 HOH A 80 280 170 HOH HOH . D 3 HOH A 81 281 172 HOH HOH . D 3 HOH A 82 282 176 HOH HOH . D 3 HOH A 83 283 178 HOH HOH . D 3 HOH A 84 284 179 HOH HOH . D 3 HOH A 85 285 180 HOH HOH . D 3 HOH A 86 286 183 HOH HOH . D 3 HOH A 87 287 128 HOH HOH . E 3 HOH B 1 1101 11 HOH HOH . E 3 HOH B 2 1102 57 HOH HOH . E 3 HOH B 3 1103 2 HOH HOH . E 3 HOH B 4 1104 3 HOH HOH . E 3 HOH B 5 1105 5 HOH HOH . E 3 HOH B 6 1106 6 HOH HOH . E 3 HOH B 7 1107 7 HOH HOH . E 3 HOH B 8 1108 10 HOH HOH . E 3 HOH B 9 1109 13 HOH HOH . E 3 HOH B 10 1110 17 HOH HOH . E 3 HOH B 11 1111 18 HOH HOH . E 3 HOH B 12 1112 19 HOH HOH . E 3 HOH B 13 1113 20 HOH HOH . E 3 HOH B 14 1114 22 HOH HOH . E 3 HOH B 15 1115 23 HOH HOH . E 3 HOH B 16 1116 24 HOH HOH . E 3 HOH B 17 1117 25 HOH HOH . E 3 HOH B 18 1118 26 HOH HOH . E 3 HOH B 19 1119 29 HOH HOH . E 3 HOH B 20 1120 31 HOH HOH . E 3 HOH B 21 1121 32 HOH HOH . E 3 HOH B 22 1122 36 HOH HOH . E 3 HOH B 23 1123 37 HOH HOH . E 3 HOH B 24 1124 38 HOH HOH . E 3 HOH B 25 1125 40 HOH HOH . E 3 HOH B 26 1126 43 HOH HOH . E 3 HOH B 27 1127 44 HOH HOH . E 3 HOH B 28 1128 45 HOH HOH . E 3 HOH B 29 1129 46 HOH HOH . E 3 HOH B 30 1130 47 HOH HOH . E 3 HOH B 31 1131 49 HOH HOH . E 3 HOH B 32 1132 50 HOH HOH . E 3 HOH B 33 1133 52 HOH HOH . E 3 HOH B 34 1134 53 HOH HOH . E 3 HOH B 35 1135 55 HOH HOH . E 3 HOH B 36 1136 56 HOH HOH . E 3 HOH B 37 1137 58 HOH HOH . E 3 HOH B 38 1138 59 HOH HOH . E 3 HOH B 39 1139 60 HOH HOH . E 3 HOH B 40 1140 62 HOH HOH . E 3 HOH B 41 1141 65 HOH HOH . E 3 HOH B 42 1142 66 HOH HOH . E 3 HOH B 43 1143 71 HOH HOH . E 3 HOH B 44 1144 72 HOH HOH . E 3 HOH B 45 1145 76 HOH HOH . E 3 HOH B 46 1146 78 HOH HOH . E 3 HOH B 47 1147 79 HOH HOH . E 3 HOH B 48 1148 87 HOH HOH . E 3 HOH B 49 1149 88 HOH HOH . E 3 HOH B 50 1150 89 HOH HOH . E 3 HOH B 51 1151 94 HOH HOH . E 3 HOH B 52 1152 95 HOH HOH . E 3 HOH B 53 1153 96 HOH HOH . E 3 HOH B 54 1154 100 HOH HOH . E 3 HOH B 55 1155 102 HOH HOH . E 3 HOH B 56 1156 103 HOH HOH . E 3 HOH B 57 1157 106 HOH HOH . E 3 HOH B 58 1158 107 HOH HOH . E 3 HOH B 59 1159 108 HOH HOH . E 3 HOH B 60 1160 110 HOH HOH . E 3 HOH B 61 1161 114 HOH HOH . E 3 HOH B 62 1162 115 HOH HOH . E 3 HOH B 63 1163 118 HOH HOH . E 3 HOH B 64 1164 121 HOH HOH . E 3 HOH B 65 1165 124 HOH HOH . E 3 HOH B 66 1166 125 HOH HOH . E 3 HOH B 67 1167 126 HOH HOH . E 3 HOH B 68 1168 127 HOH HOH . E 3 HOH B 69 1169 129 HOH HOH . E 3 HOH B 70 1170 131 HOH HOH . E 3 HOH B 71 1171 134 HOH HOH . E 3 HOH B 72 1172 137 HOH HOH . E 3 HOH B 73 1173 138 HOH HOH . E 3 HOH B 74 1174 141 HOH HOH . E 3 HOH B 75 1175 144 HOH HOH . E 3 HOH B 76 1176 145 HOH HOH . E 3 HOH B 77 1177 148 HOH HOH . E 3 HOH B 78 1178 149 HOH HOH . E 3 HOH B 79 1179 151 HOH HOH . E 3 HOH B 80 1180 155 HOH HOH . E 3 HOH B 81 1181 157 HOH HOH . E 3 HOH B 82 1182 158 HOH HOH . E 3 HOH B 83 1183 159 HOH HOH . E 3 HOH B 84 1184 160 HOH HOH . E 3 HOH B 85 1185 163 HOH HOH . E 3 HOH B 86 1186 164 HOH HOH . E 3 HOH B 87 1187 166 HOH HOH . E 3 HOH B 88 1188 167 HOH HOH . E 3 HOH B 89 1189 168 HOH HOH . E 3 HOH B 90 1190 171 HOH HOH . E 3 HOH B 91 1191 173 HOH HOH . E 3 HOH B 92 1192 174 HOH HOH . E 3 HOH B 93 1193 175 HOH HOH . E 3 HOH B 94 1194 177 HOH HOH . E 3 HOH B 95 1195 181 HOH HOH . E 3 HOH B 96 1196 182 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x -0.246 _atom_site.Cartn_y -6.91 _atom_site.Cartn_z 0.661 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.55 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 1001 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #