data_4LSA # _model_server_result.job_id t19zodJqadCoqxsIzti58w _model_server_result.datetime_utc '2024-11-15 15:04:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lsa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":806}' # _entry.id 4LSA # _exptl.entry_id 4LSA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.09 _cell.angle_gamma 90 _cell.entry_id 4LSA _cell.length_a 174.033 _cell.length_b 67.303 _cell.length_c 120.901 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LSA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 2 NAG 2 n B NAG 2 B 2 NAG B 3 NAG 2 n B BMA 3 B 3 BMA B 4 BMA 2 n B MAN 4 B 4 MAN B 5 MAN 2 n C NAG 1 C 1 NAG B 7 NAG 2 n C NAG 2 C 2 NAG B 8 NAG 2 n C BMA 3 C 3 BMA B 9 BMA 2 n C MAN 4 C 4 MAN B 10 MAN 2 n D NAG 1 D 1 NAG B 12 NAG 2 n D NAG 2 D 2 NAG B 13 NAG 2 n D BMA 3 D 3 BMA B 14 BMA 2 n D MAN 4 D 4 MAN B 15 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 39 A CYS 62 1_555 A SG CYS 46 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 97 A CYS 120 1_555 A SG CYS 124 A CYS 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 176 A CYS 199 1_555 A SG CYS 198 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 A SG CYS 221 A CYS 244 1_555 A SG CYS 245 A CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 292 A CYS 315 1_555 A SG CYS 316 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 388 A CYS 411 1_555 A SG CYS 416 A CYS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 586 A CYS 609 1_555 A SG CYS 612 A CYS 635 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 A SG CYS 740 A CYS 763 1_555 A SG CYS 747 A CYS 770 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A ND2 ASN 89 A ASN 112 1_555 E C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 131 A ASN 154 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 210 A ASN 233 1_555 F C1 NAG . A NAG 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 A ND2 ASN 252 A ASN 275 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 A ND2 ASN 328 A ASN 351 1_555 G C1 NAG . A NAG 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 A ND2 ASN 522 A ASN 545 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale7 A ND2 ASN 550 A ASN 573 1_555 H C1 NAG . A NAG 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale8 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale13 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale14 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale15 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale16 D O3 BMA . D BMA 3 1_555 D C1 MAN . D MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 370 n n C1 O1 NAG sing 371 n n C1 O5 NAG sing 372 n n C1 H1 NAG sing 373 n n C2 C3 NAG sing 374 n n C2 N2 NAG sing 375 n n C2 H2 NAG sing 376 n n C3 C4 NAG sing 377 n n C3 O3 NAG sing 378 n n C3 H3 NAG sing 379 n n C4 C5 NAG sing 380 n n C4 O4 NAG sing 381 n n C4 H4 NAG sing 382 n n C5 C6 NAG sing 383 n n C5 O5 NAG sing 384 n n C5 H5 NAG sing 385 n n C6 O6 NAG sing 386 n n C6 H61 NAG sing 387 n n C6 H62 NAG sing 388 n n C7 C8 NAG sing 389 n n C7 N2 NAG sing 390 n n C7 O7 NAG doub 391 n n C8 H81 NAG sing 392 n n C8 H82 NAG sing 393 n n C8 H83 NAG sing 394 n n N2 HN2 NAG sing 395 n n O1 HO1 NAG sing 396 n n O3 HO3 NAG sing 397 n n O4 HO4 NAG sing 398 n n O6 HO6 NAG sing 399 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4LSA _atom_sites.fract_transf_matrix[1][1] 0.005746 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003464 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 801 1 NAG NAG . F 3 NAG A 1 806 6 NAG NAG . G 3 NAG A 1 811 11 NAG NAG . H 3 NAG A 1 816 16 NAG NAG . I 4 BLD A 1 817 17 BLD BLD . J 5 HOH A 1 901 1 HOH HOH . J 5 HOH A 2 902 2 HOH HOH . J 5 HOH A 3 903 3 HOH HOH . J 5 HOH A 4 904 4 HOH HOH . J 5 HOH A 5 905 5 HOH HOH . J 5 HOH A 6 906 6 HOH HOH . J 5 HOH A 7 907 7 HOH HOH . J 5 HOH A 8 908 8 HOH HOH . J 5 HOH A 9 909 9 HOH HOH . J 5 HOH A 10 910 10 HOH HOH . J 5 HOH A 11 911 11 HOH HOH . J 5 HOH A 12 912 12 HOH HOH . J 5 HOH A 13 913 13 HOH HOH . J 5 HOH A 14 914 14 HOH HOH . J 5 HOH A 15 915 15 HOH HOH . J 5 HOH A 16 916 16 HOH HOH . J 5 HOH A 17 917 17 HOH HOH . J 5 HOH A 18 918 18 HOH HOH . J 5 HOH A 19 919 19 HOH HOH . J 5 HOH A 20 920 20 HOH HOH . J 5 HOH A 21 921 21 HOH HOH . J 5 HOH A 22 922 22 HOH HOH . J 5 HOH A 23 923 23 HOH HOH . J 5 HOH A 24 924 24 HOH HOH . J 5 HOH A 25 925 25 HOH HOH . J 5 HOH A 26 926 26 HOH HOH . J 5 HOH A 27 927 27 HOH HOH . J 5 HOH A 28 928 28 HOH HOH . J 5 HOH A 29 929 29 HOH HOH . J 5 HOH A 30 930 30 HOH HOH . J 5 HOH A 31 931 31 HOH HOH . J 5 HOH A 32 932 32 HOH HOH . J 5 HOH A 33 933 33 HOH HOH . J 5 HOH A 34 934 34 HOH HOH . J 5 HOH A 35 935 35 HOH HOH . J 5 HOH A 36 936 36 HOH HOH . J 5 HOH A 37 937 37 HOH HOH . J 5 HOH A 38 938 38 HOH HOH . J 5 HOH A 39 939 39 HOH HOH . J 5 HOH A 40 940 40 HOH HOH . J 5 HOH A 41 941 41 HOH HOH . J 5 HOH A 42 942 42 HOH HOH . J 5 HOH A 43 943 43 HOH HOH . J 5 HOH A 44 944 44 HOH HOH . J 5 HOH A 45 945 45 HOH HOH . J 5 HOH A 46 946 46 HOH HOH . J 5 HOH A 47 947 47 HOH HOH . J 5 HOH A 48 948 48 HOH HOH . J 5 HOH A 49 949 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 3 52.975 53.667 -6.374 1 84.93 ? C1 NAG 806 A 1 HETATM 2 C C2 NAG . . . F 3 51.886 54.725 -6.547 1 81.31 ? C2 NAG 806 A 1 HETATM 3 C C3 NAG . . . F 3 50.581 54.073 -6.995 1 91.34 ? C3 NAG 806 A 1 HETATM 4 C C4 NAG . . . F 3 50.812 53.226 -8.239 1 95.98 ? C4 NAG 806 A 1 HETATM 5 C C5 NAG . . . F 3 51.939 52.229 -7.988 1 90.17 ? C5 NAG 806 A 1 HETATM 6 C C6 NAG . . . F 3 52.3 51.421 -9.213 1 90.13 ? C6 NAG 806 A 1 HETATM 7 C C7 NAG . . . F 3 51.672 56.809 -5.267 1 72.95 ? C7 NAG 806 A 1 HETATM 8 C C8 NAG . . . F 3 51.452 57.414 -3.913 1 76.31 ? C8 NAG 806 A 1 HETATM 9 N N2 NAG . . . F 3 51.686 55.473 -5.315 1 66.78 ? N2 NAG 806 A 1 HETATM 10 O O3 NAG . . . F 3 49.613 55.081 -7.265 1 95.27 ? O3 NAG 806 A 1 HETATM 11 O O4 NAG . . . F 3 49.622 52.523 -8.58 1 102.84 ? O4 NAG 806 A 1 HETATM 12 O O5 NAG . . . F 3 53.126 52.931 -7.591 1 95.16 ? O5 NAG 806 A 1 HETATM 13 O O6 NAG . . . F 3 52.797 52.249 -10.255 1 92.1 ? O6 NAG 806 A 1 HETATM 14 O O7 NAG . . . F 3 51.83 57.498 -6.271 1 67.61 ? O7 NAG 806 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #