data_4LSC # _model_server_result.job_id kinJL-_0xNbjTNxJ0B0l8A _model_server_result.datetime_utc '2024-10-19 10:36:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lsc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1004}' # _entry.id 4LSC # _exptl.entry_id 4LSC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LSC _cell.length_a 72.63 _cell.length_b 72.63 _cell.length_c 80.97 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LSC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 1000 NAG 2 n B NAG 2 B 2 NAG A 1001 NAG 2 n B BMA 3 B 3 BMA A 1002 BMA 2 n B FUC 4 B 4 FUC A 1003 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 40 A CYS 58 1_555 A SG CYS 47 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 184 A CYS 202 1_555 A SG CYS 192 A CYS 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale1 A ND2 ASN 86 A ASN 104 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 A ND2 ASN 132 A ASN 150 1_555 C C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale3 A ND2 ASN 166 A ASN 184 1_555 D C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale5 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 284 n n C1 O1 NAG sing 285 n n C1 O5 NAG sing 286 n n C1 H1 NAG sing 287 n n C2 C3 NAG sing 288 n n C2 N2 NAG sing 289 n n C2 H2 NAG sing 290 n n C3 C4 NAG sing 291 n n C3 O3 NAG sing 292 n n C3 H3 NAG sing 293 n n C4 C5 NAG sing 294 n n C4 O4 NAG sing 295 n n C4 H4 NAG sing 296 n n C5 C6 NAG sing 297 n n C5 O5 NAG sing 298 n n C5 H5 NAG sing 299 n n C6 O6 NAG sing 300 n n C6 H61 NAG sing 301 n n C6 H62 NAG sing 302 n n C7 C8 NAG sing 303 n n C7 N2 NAG sing 304 n n C7 O7 NAG doub 305 n n C8 H81 NAG sing 306 n n C8 H82 NAG sing 307 n n C8 H83 NAG sing 308 n n N2 HN2 NAG sing 309 n n O1 HO1 NAG sing 310 n n O3 HO3 NAG sing 311 n n O4 HO4 NAG sing 312 n n O6 HO6 NAG sing 313 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4LSC _atom_sites.fract_transf_matrix[1][1] 0.013768 _atom_sites.fract_transf_matrix[1][2] 0.007949 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015898 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 1004 1004 NAG NAG . D 3 NAG A 1 1005 1005 NAG NAG . E 4 HOH A 1 1101 1101 HOH HOH . E 4 HOH A 2 1102 1102 HOH HOH . E 4 HOH A 3 1103 1103 HOH HOH . E 4 HOH A 4 1104 1104 HOH HOH . E 4 HOH A 5 1105 1105 HOH HOH . E 4 HOH A 6 1106 1106 HOH HOH . E 4 HOH A 7 1107 1107 HOH HOH . E 4 HOH A 8 1108 1108 HOH HOH . E 4 HOH A 9 1109 1109 HOH HOH . E 4 HOH A 10 1110 1110 HOH HOH . E 4 HOH A 11 1111 1111 HOH HOH . E 4 HOH A 12 1112 1112 HOH HOH . E 4 HOH A 13 1113 1113 HOH HOH . E 4 HOH A 14 1114 1114 HOH HOH . E 4 HOH A 15 1115 1115 HOH HOH . E 4 HOH A 16 1116 1116 HOH HOH . E 4 HOH A 17 1117 1117 HOH HOH . E 4 HOH A 18 1118 1118 HOH HOH . E 4 HOH A 19 1119 1119 HOH HOH . E 4 HOH A 20 1120 1120 HOH HOH . E 4 HOH A 21 1121 1121 HOH HOH . E 4 HOH A 22 1122 1122 HOH HOH . E 4 HOH A 23 1123 1123 HOH HOH . E 4 HOH A 24 1124 1124 HOH HOH . E 4 HOH A 25 1125 1125 HOH HOH . E 4 HOH A 26 1126 1126 HOH HOH . E 4 HOH A 27 1127 1127 HOH HOH . E 4 HOH A 28 1128 1128 HOH HOH . E 4 HOH A 29 1129 1129 HOH HOH . E 4 HOH A 30 1130 1130 HOH HOH . E 4 HOH A 31 1131 1131 HOH HOH . E 4 HOH A 32 1132 1132 HOH HOH . E 4 HOH A 33 1133 1133 HOH HOH . E 4 HOH A 34 1134 1134 HOH HOH . E 4 HOH A 35 1135 1135 HOH HOH . E 4 HOH A 36 1136 1136 HOH HOH . E 4 HOH A 37 1137 1137 HOH HOH . E 4 HOH A 38 1138 1138 HOH HOH . E 4 HOH A 39 1139 1139 HOH HOH . E 4 HOH A 40 1140 1140 HOH HOH . E 4 HOH A 41 1141 1141 HOH HOH . E 4 HOH A 42 1142 1142 HOH HOH . E 4 HOH A 43 1143 1143 HOH HOH . E 4 HOH A 44 1144 1144 HOH HOH . E 4 HOH A 45 1145 1145 HOH HOH . E 4 HOH A 46 1146 1146 HOH HOH . E 4 HOH A 47 1147 1147 HOH HOH . E 4 HOH A 48 1148 1148 HOH HOH . E 4 HOH A 49 1149 1149 HOH HOH . E 4 HOH A 50 1150 1150 HOH HOH . E 4 HOH A 51 1151 1151 HOH HOH . E 4 HOH A 52 1152 1152 HOH HOH . E 4 HOH A 53 1153 1153 HOH HOH . E 4 HOH A 54 1154 1154 HOH HOH . E 4 HOH A 55 1155 1155 HOH HOH . E 4 HOH A 56 1156 1156 HOH HOH . E 4 HOH A 57 1157 1157 HOH HOH . E 4 HOH A 58 1158 1158 HOH HOH . E 4 HOH A 59 1159 1159 HOH HOH . E 4 HOH A 60 1160 1160 HOH HOH . E 4 HOH A 61 1161 1161 HOH HOH . E 4 HOH A 62 1162 1162 HOH HOH . E 4 HOH A 63 1163 1163 HOH HOH . E 4 HOH A 64 1164 1164 HOH HOH . E 4 HOH A 65 1165 1165 HOH HOH . E 4 HOH A 66 1166 1166 HOH HOH . E 4 HOH A 67 1167 1167 HOH HOH . E 4 HOH A 68 1168 1168 HOH HOH . E 4 HOH A 69 1169 1169 HOH HOH . E 4 HOH A 70 1170 1170 HOH HOH . E 4 HOH A 71 1171 1171 HOH HOH . E 4 HOH A 72 1172 1172 HOH HOH . E 4 HOH A 73 1173 1173 HOH HOH . E 4 HOH A 74 1174 1174 HOH HOH . E 4 HOH A 75 1175 1175 HOH HOH . E 4 HOH A 76 1176 1176 HOH HOH . E 4 HOH A 77 1177 1177 HOH HOH . E 4 HOH A 78 1178 1178 HOH HOH . E 4 HOH A 79 1179 1179 HOH HOH . E 4 HOH A 80 1180 1180 HOH HOH . E 4 HOH A 81 1181 1181 HOH HOH . E 4 HOH A 82 1182 1182 HOH HOH . E 4 HOH A 83 1183 1183 HOH HOH . E 4 HOH A 84 1184 1184 HOH HOH . E 4 HOH A 85 1185 1185 HOH HOH . E 4 HOH A 86 1186 1186 HOH HOH . E 4 HOH A 87 1187 1187 HOH HOH . E 4 HOH A 88 1188 1188 HOH HOH . E 4 HOH A 89 1189 1189 HOH HOH . E 4 HOH A 90 1190 1190 HOH HOH . E 4 HOH A 91 1191 1191 HOH HOH . E 4 HOH A 92 1192 1192 HOH HOH . E 4 HOH A 93 1193 1193 HOH HOH . E 4 HOH A 94 1194 1194 HOH HOH . E 4 HOH A 95 1195 1195 HOH HOH . E 4 HOH A 96 1196 1196 HOH HOH . E 4 HOH A 97 1197 1197 HOH HOH . E 4 HOH A 98 1198 1198 HOH HOH . E 4 HOH A 99 1199 1199 HOH HOH . E 4 HOH A 100 1200 1200 HOH HOH . E 4 HOH A 101 1201 1201 HOH HOH . E 4 HOH A 102 1202 1202 HOH HOH . E 4 HOH A 103 1203 1203 HOH HOH . E 4 HOH A 104 1204 1204 HOH HOH . E 4 HOH A 105 1205 1205 HOH HOH . E 4 HOH A 106 1206 1206 HOH HOH . E 4 HOH A 107 1207 1207 HOH HOH . E 4 HOH A 108 1208 1208 HOH HOH . E 4 HOH A 109 1209 1209 HOH HOH . E 4 HOH A 110 1210 1210 HOH HOH . E 4 HOH A 111 1211 1211 HOH HOH . E 4 HOH A 112 1212 1212 HOH HOH . E 4 HOH A 113 1213 1213 HOH HOH . E 4 HOH A 114 1214 1214 HOH HOH . E 4 HOH A 115 1215 1215 HOH HOH . E 4 HOH A 116 1216 1216 HOH HOH . E 4 HOH A 117 1217 1217 HOH HOH . E 4 HOH A 118 1218 1218 HOH HOH . E 4 HOH A 119 1219 1219 HOH HOH . E 4 HOH A 120 1220 1220 HOH HOH . E 4 HOH A 121 1221 1221 HOH HOH . E 4 HOH A 122 1222 1222 HOH HOH . E 4 HOH A 123 1223 1223 HOH HOH . E 4 HOH A 124 1224 1224 HOH HOH . E 4 HOH A 125 1225 1225 HOH HOH . E 4 HOH A 126 1226 1226 HOH HOH . E 4 HOH A 127 1227 1227 HOH HOH . E 4 HOH A 128 1228 1228 HOH HOH . E 4 HOH A 129 1229 1229 HOH HOH . E 4 HOH A 130 1230 1230 HOH HOH . E 4 HOH A 131 1231 1231 HOH HOH . E 4 HOH A 132 1232 1232 HOH HOH . E 4 HOH A 133 1233 1233 HOH HOH . E 4 HOH A 134 1234 1234 HOH HOH . E 4 HOH A 135 1235 1235 HOH HOH . E 4 HOH A 136 1236 1236 HOH HOH . E 4 HOH A 137 1237 1237 HOH HOH . E 4 HOH A 138 1238 1238 HOH HOH . E 4 HOH A 139 1239 1239 HOH HOH . E 4 HOH A 140 1240 1240 HOH HOH . E 4 HOH A 141 1241 1241 HOH HOH . E 4 HOH A 142 1242 1242 HOH HOH . E 4 HOH A 143 1243 1243 HOH HOH . E 4 HOH A 144 1244 1244 HOH HOH . E 4 HOH A 145 1245 1245 HOH HOH . E 4 HOH A 146 1246 1246 HOH HOH . E 4 HOH A 147 1247 1247 HOH HOH . E 4 HOH A 148 1248 1248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 56.176 15.231 38.475 1 26.88 ? C1 NAG 1004 A 1 HETATM 2 C C2 NAG . . . C 3 57.686 14.999 38.388 1 33.69 ? C2 NAG 1004 A 1 HETATM 3 C C3 NAG . . . C 3 58.322 15.262 39.749 1 31.11 ? C3 NAG 1004 A 1 HETATM 4 C C4 NAG . . . C 3 57.987 16.672 40.22 1 31 ? C4 NAG 1004 A 1 HETATM 5 C C5 NAG . . . C 3 56.48 16.919 40.188 1 33.21 ? C5 NAG 1004 A 1 HETATM 6 C C6 NAG . . . C 3 56.139 18.377 40.403 1 38.54 ? C6 NAG 1004 A 1 HETATM 7 C C7 NAG . . . C 3 58.876 13.415 36.941 1 36.83 ? C7 NAG 1004 A 1 HETATM 8 C C8 NAG . . . C 3 59.092 11.971 36.6 1 46.23 ? C8 NAG 1004 A 1 HETATM 9 N N2 NAG . . . C 3 58.005 13.659 37.926 1 36.78 ? N2 NAG 1004 A 1 HETATM 10 O O3 NAG . . . C 3 59.736 15.097 39.644 1 42.64 ? O3 NAG 1004 A 1 HETATM 11 O O4 NAG . . . C 3 58.434 16.848 41.562 1 40.67 ? O4 NAG 1004 A 1 HETATM 12 O O5 NAG . . . C 3 55.93 16.568 38.907 1 26.02 ? O5 NAG 1004 A 1 HETATM 13 O O6 NAG . . . C 3 55.153 18.531 41.413 1 64.76 ? O6 NAG 1004 A 1 HETATM 14 O O7 NAG . . . C 3 59.453 14.321 36.341 1 39.21 ? O7 NAG 1004 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 78 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 14 #