data_4LSL
#
_model_server_result.job_id            5Z322wqciMhXPraAFQMdsg 
_model_server_result.datetime_utc      '2025-04-22 08:33:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lsl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    4LSL 
#
_exptl.entry_id    4LSL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              409.822 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E)-3-(3-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.38 
_cell.angle_gamma         90 
_cell.entry_id            4LSL 
_cell.length_a            224.872 
_cell.length_b            69.316 
_cell.length_c            104.341 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LSL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H16 Cl N3 O4' 
_chem_comp.formula_weight    409.822 
_chem_comp.id                1YQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E)-3-(3-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (E)-3-(3-bromo-5-(4-chloro-2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 C0X 1YQ doub 1 n n 
C17 C15 1YQ sing 2 n n 
C17 N19 1YQ trip 3 n n 
C00 C01 1YQ doub 4 n y 
C00 C05 1YQ sing 5 n y 
C01 C02 1YQ sing 6 n y 
C02 C03 1YQ doub 7 n y 
C03 C04 1YQ sing 8 n y 
C04 C05 1YQ doub 9 n y 
C04 O0A 1YQ sing 10 n n 
C05 O0B 1YQ sing 11 n n 
O0A C0C 1YQ sing 12 n n 
O0B C0O 1YQ sing 13 n n 
C0C C0D 1YQ doub 14 n y 
C0C C0H 1YQ sing 15 n y 
C0D C0E 1YQ sing 16 n y 
C0E C0F 1YQ doub 17 n y 
C0F C0G 1YQ sing 18 n y 
C0G C0H 1YQ doub 19 n y 
C0G C0M 1YQ sing 20 n n 
C0M C15 1YQ doub 21 e n 
C0O C0P 1YQ sing 22 n n 
C0P N0S 1YQ sing 23 n n 
N0S C0V 1YQ sing 24 n n 
N0S C0Z 1YQ sing 25 n n 
C0V N0W 1YQ sing 26 n n 
C0V O10 1YQ doub 27 n n 
N0W C0X 1YQ sing 28 n n 
C0X C0Y 1YQ sing 29 n n 
C0Y C0Z 1YQ doub 30 n n 
C01 CL1 1YQ sing 31 n n 
C00 H1 1YQ sing 32 n n 
C02 H2 1YQ sing 33 n n 
C03 H3 1YQ sing 34 n n 
C0D H7 1YQ sing 35 n n 
C0E H8 1YQ sing 36 n n 
C0F H9 1YQ sing 37 n n 
C0H H10 1YQ sing 38 n n 
C0M H11 1YQ sing 39 n n 
C0O H12 1YQ sing 40 n n 
C0O H13 1YQ sing 41 n n 
C0P H14 1YQ sing 42 n n 
C0P H15 1YQ sing 43 n n 
N0W H16 1YQ sing 44 n n 
C0Y H17 1YQ sing 45 n n 
C0Z H18 1YQ sing 46 n n 
C15 H19 1YQ sing 47 n n 
#
_atom_sites.entry_id                     4LSL 
_atom_sites.fract_transf_matrix[1][1]    0.004447 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001307 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014427 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009989 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 1YQ A 1 601 1 1YQ 476 . 
D 4 HOH A 1 701 4 HOH HOH . 
D 4 HOH A 2 702 5 HOH HOH . 
D 4 HOH A 3 703 7 HOH HOH . 
D 4 HOH A 4 704 12 HOH HOH . 
D 4 HOH A 5 705 16 HOH HOH . 
D 4 HOH A 6 706 19 HOH HOH . 
D 4 HOH A 7 707 22 HOH HOH . 
D 4 HOH A 8 708 25 HOH HOH . 
D 4 HOH A 9 709 29 HOH HOH . 
D 4 HOH A 10 710 30 HOH HOH . 
D 4 HOH A 11 711 31 HOH HOH . 
D 4 HOH A 12 712 32 HOH HOH . 
D 4 HOH A 13 713 36 HOH HOH . 
D 4 HOH A 14 714 37 HOH HOH . 
D 4 HOH A 15 715 39 HOH HOH . 
D 4 HOH A 16 716 40 HOH HOH . 
E 4 HOH B 1 501 1 HOH HOH . 
E 4 HOH B 2 502 2 HOH HOH . 
E 4 HOH B 3 503 6 HOH HOH . 
E 4 HOH B 4 504 9 HOH HOH . 
E 4 HOH B 5 505 10 HOH HOH . 
E 4 HOH B 6 506 11 HOH HOH . 
E 4 HOH B 7 507 13 HOH HOH . 
E 4 HOH B 8 508 14 HOH HOH . 
E 4 HOH B 9 509 18 HOH HOH . 
E 4 HOH B 10 510 23 HOH HOH . 
E 4 HOH B 11 511 24 HOH HOH . 
E 4 HOH B 12 512 28 HOH HOH . 
E 4 HOH B 13 513 33 HOH HOH . 
E 4 HOH B 14 514 34 HOH HOH . 
E 4 HOH B 15 515 35 HOH HOH . 
E 4 HOH B 16 516 38 HOH HOH . 
E 4 HOH B 17 517 41 HOH HOH . 
E 4 HOH B 18 518 42 HOH HOH . 
E 4 HOH B 19 519 43 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 1YQ . . . C 3 496.017 -30.845 23.21 1 77.56 ? O12 1YQ 601 A 1 
HETATM 2 C C17 1YQ . . . C 3 499.36 -23.458 28.921 1 77.56 ? C17 1YQ 601 A 1 
HETATM 3 C C00 1YQ . . . C 3 495.211 -23.629 19.373 1 77.56 ? C00 1YQ 601 A 1 
HETATM 4 C C01 1YQ . . . C 3 496.119 -22.904 18.583 1 77.56 ? C01 1YQ 601 A 1 
HETATM 5 C C02 1YQ . . . C 3 497.355 -22.485 19.112 1 77.56 ? C02 1YQ 601 A 1 
HETATM 6 C C03 1YQ . . . C 3 497.669 -22.804 20.446 1 77.56 ? C03 1YQ 601 A 1 
HETATM 7 C C04 1YQ . . . C 3 496.763 -23.536 21.27 1 77.56 ? C04 1YQ 601 A 1 
HETATM 8 C C05 1YQ . . . C 3 495.493 -23.967 20.715 1 77.56 ? C05 1YQ 601 A 1 
HETATM 9 CL CL1 1YQ . . . C 3 495.679 -22.544 16.966 1 77.56 ? CL1 1YQ 601 A 1 
HETATM 10 O O0A 1YQ . . . C 3 497.17 -23.797 22.564 1 77.56 ? O0A 1YQ 601 A 1 
HETATM 11 O O0B 1YQ . . . C 3 494.424 -24.681 21.25 1 77.56 ? O0B 1YQ 601 A 1 
HETATM 12 C C0C 1YQ . . . C 3 496.845 -22.965 23.61 1 77.56 ? C0C 1YQ 601 A 1 
HETATM 13 C C0D 1YQ . . . C 3 495.912 -21.898 23.503 1 77.56 ? C0D 1YQ 601 A 1 
HETATM 14 C C0E 1YQ . . . C 3 495.62 -21.085 24.62 1 77.56 ? C0E 1YQ 601 A 1 
HETATM 15 C C0F 1YQ . . . C 3 496.261 -21.339 25.844 1 77.56 ? C0F 1YQ 601 A 1 
HETATM 16 C C0G 1YQ . . . C 3 497.186 -22.385 25.992 1 77.56 ? C0G 1YQ 601 A 1 
HETATM 17 C C0H 1YQ . . . C 3 497.475 -23.204 24.853 1 77.56 ? C0H 1YQ 601 A 1 
HETATM 18 C C0M 1YQ . . . C 3 497.772 -22.516 27.334 1 77.56 ? C0M 1YQ 601 A 1 
HETATM 19 C C0O 1YQ . . . C 3 494.211 -24.969 22.624 1 77.56 ? C0O 1YQ 601 A 1 
HETATM 20 C C0P 1YQ . . . C 3 493.224 -26.132 22.8 1 77.56 ? C0P 1YQ 601 A 1 
HETATM 21 N N0S 1YQ . . . C 3 493.954 -27.408 22.874 1 77.56 ? N0S 1YQ 601 A 1 
HETATM 22 C C0V 1YQ . . . C 3 493.881 -28.354 21.882 1 77.56 ? C0V 1YQ 601 A 1 
HETATM 23 N N0W 1YQ . . . C 3 494.613 -29.475 22.095 1 77.56 ? N0W 1YQ 601 A 1 
HETATM 24 C C0X 1YQ . . . C 3 495.408 -29.774 23.155 1 77.56 ? C0X 1YQ 601 A 1 
HETATM 25 C C0Y 1YQ . . . C 3 495.464 -28.74 24.199 1 77.56 ? C0Y 1YQ 601 A 1 
HETATM 26 C C0Z 1YQ . . . C 3 494.748 -27.596 24.037 1 77.56 ? C0Z 1YQ 601 A 1 
HETATM 27 O O10 1YQ . . . C 3 493.209 -28.236 20.856 1 77.56 ? O10 1YQ 601 A 1 
HETATM 28 C C15 1YQ . . . C 3 498.545 -23.533 27.737 1 77.56 ? C15 1YQ 601 A 1 
HETATM 29 N N19 1YQ . . . C 3 499.873 -23.456 29.954 1 77.56 ? N19 1YQ 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           29 
#