data_4LSN
#
_model_server_result.job_id            8juxnLj4KPYvrFgCRMSXFw 
_model_server_result.datetime_utc      '2025-08-04 22:02:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lsn 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
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_entry.id    4LSN 
#
_exptl.entry_id    4LSN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              488.719 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (2E)-3-(3-bromo-5-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.41 
_cell.angle_gamma         90 
_cell.entry_id            4LSN 
_cell.length_a            222.824 
_cell.length_b            68.593 
_cell.length_c            103.542 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 4LSN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H15 Br Cl N3 O4' 
_chem_comp.formula_weight    488.719 
_chem_comp.id                1YR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (2E)-3-(3-bromo-5-{4-chloro-2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     (E)-3-(3-bromo-5-(4-chloro-2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)phenyl)acrylonitrile 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C15 C17 1YR sing 1 n n 
C15 C0M 1YR doub 2 e n 
C17 N19 1YR trip 3 n n 
C00 C01 1YR doub 4 n y 
C00 C05 1YR sing 5 n y 
C01 C02 1YR sing 6 n y 
C02 C03 1YR doub 7 n y 
C03 C04 1YR sing 8 n y 
C04 C05 1YR doub 9 n y 
C04 O0A 1YR sing 10 n n 
C05 O0B 1YR sing 11 n n 
O0A C0C 1YR sing 12 n n 
O0B C0O 1YR sing 13 n n 
C0C C0D 1YR doub 14 n y 
C0C C0H 1YR sing 15 n y 
C0D C0E 1YR sing 16 n y 
C0E C0F 1YR doub 17 n y 
C0E BR1 1YR sing 18 n n 
C0F C0G 1YR sing 19 n y 
C0G C0H 1YR doub 20 n y 
C0G C0M 1YR sing 21 n n 
C0O C0P 1YR sing 22 n n 
C0P N0S 1YR sing 23 n n 
N0S C0V 1YR sing 24 n n 
N0S C0Z 1YR sing 25 n n 
C0V N0W 1YR sing 26 n n 
C0V O10 1YR doub 27 n n 
N0W C0X 1YR sing 28 n n 
C0X C0Y 1YR sing 29 n n 
C0X O12 1YR doub 30 n n 
C0Y C0Z 1YR doub 31 n n 
C01 CL1 1YR sing 32 n n 
C15 H1 1YR sing 33 n n 
C00 H3 1YR sing 34 n n 
C02 H4 1YR sing 35 n n 
C03 H5 1YR sing 36 n n 
C0D H9 1YR sing 37 n n 
C0F H10 1YR sing 38 n n 
C0H H11 1YR sing 39 n n 
C0M H12 1YR sing 40 n n 
C0O H14 1YR sing 41 n n 
C0O H15 1YR sing 42 n n 
C0P H16 1YR sing 43 n n 
C0P H17 1YR sing 44 n n 
N0W H18 1YR sing 45 n n 
C0Y H19 1YR sing 46 n n 
C0Z H20 1YR sing 47 n n 
#
_atom_sites.entry_id                     4LSN 
_atom_sites.fract_transf_matrix[1][1]    0.004488 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001407 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014579 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010122 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 1YR A 1 601 1 1YR 518 . 
D 4 HOH A 1 701 2 HOH HOH . 
D 4 HOH A 2 702 4 HOH HOH . 
D 4 HOH A 3 703 5 HOH HOH . 
D 4 HOH A 4 704 6 HOH HOH . 
D 4 HOH A 5 705 7 HOH HOH . 
D 4 HOH A 6 706 9 HOH HOH . 
D 4 HOH A 7 707 12 HOH HOH . 
D 4 HOH A 8 708 13 HOH HOH . 
D 4 HOH A 9 709 15 HOH HOH . 
D 4 HOH A 10 710 16 HOH HOH . 
E 4 HOH B 1 501 1 HOH HOH . 
E 4 HOH B 2 502 8 HOH HOH . 
E 4 HOH B 3 503 10 HOH HOH . 
E 4 HOH B 4 504 11 HOH HOH . 
E 4 HOH B 5 505 14 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 1YR . . . C 3 463.421 -19.724 126.387 1 89.46 ? C15 1YR 601 A 1 
HETATM 2 C C17 1YR . . . C 3 464.215 -19.65 127.568 1 89.46 ? C17 1YR 601 A 1 
HETATM 3 C C00 1YR . . . C 3 460.223 -19.57 117.967 1 89.46 ? C00 1YR 601 A 1 
HETATM 4 C C01 1YR . . . C 3 461.157 -18.748 117.297 1 89.46 ? C01 1YR 601 A 1 
HETATM 5 C C02 1YR . . . C 3 462.32 -18.308 117.96 1 89.46 ? C02 1YR 601 A 1 
HETATM 6 C C03 1YR . . . C 3 462.544 -18.695 119.295 1 89.46 ? C03 1YR 601 A 1 
HETATM 7 C C04 1YR . . . C 3 461.612 -19.526 119.982 1 89.46 ? C04 1YR 601 A 1 
HETATM 8 C C05 1YR . . . C 3 460.422 -19.973 119.307 1 89.46 ? C05 1YR 601 A 1 
HETATM 9 CL CL1 1YR . . . C 3 460.863 -18.288 115.667 1 89.46 ? CL1 1YR 601 A 1 
HETATM 10 O O0A 1YR . . . C 3 461.874 -19.872 121.291 1 89.46 ? O0A 1YR 601 A 1 
HETATM 11 O O0B 1YR . . . C 3 459.405 -20.776 119.796 1 89.46 ? O0B 1YR 601 A 1 
HETATM 12 C C0C 1YR . . . C 3 461.707 -18.971 122.323 1 89.46 ? C0C 1YR 601 A 1 
HETATM 13 C C0D 1YR . . . C 3 461.084 -17.706 122.167 1 89.46 ? C0D 1YR 601 A 1 
HETATM 14 C C0E 1YR . . . C 3 460.952 -16.841 123.269 1 89.46 ? C0E 1YR 601 A 1 
HETATM 15 C C0F 1YR . . . C 3 461.435 -17.235 124.536 1 89.46 ? C0F 1YR 601 A 1 
HETATM 16 C C0G 1YR . . . C 3 462.061 -18.486 124.728 1 89.46 ? C0G 1YR 601 A 1 
HETATM 17 C C0H 1YR . . . C 3 462.189 -19.35 123.601 1 89.46 ? C0H 1YR 601 A 1 
HETATM 18 BR BR1 1YR . . . C 3 460.133 -15.18 123.042 1 89.46 ? BR1 1YR 601 A 1 
HETATM 19 C C0M 1YR . . . C 3 462.509 -18.765 126.076 1 89.46 ? C0M 1YR 601 A 1 
HETATM 20 C C0O 1YR . . . C 3 458.531 -21.549 118.982 1 89.46 ? C0O 1YR 601 A 1 
HETATM 21 C C0P 1YR . . . C 3 457.703 -22.513 119.85 1 89.46 ? C0P 1YR 601 A 1 
HETATM 22 N N0S 1YR . . . C 3 458.598 -23.44 120.569 1 89.46 ? N0S 1YR 601 A 1 
HETATM 23 C C0V 1YR . . . C 3 458.984 -24.65 120.047 1 89.46 ? C0V 1YR 601 A 1 
HETATM 24 N N0W 1YR . . . C 3 459.813 -25.393 120.823 1 89.46 ? N0W 1YR 601 A 1 
HETATM 25 C C0X 1YR . . . C 3 460.303 -25.087 122.048 1 89.46 ? C0X 1YR 601 A 1 
HETATM 26 C C0Y 1YR . . . C 3 459.876 -23.79 122.583 1 89.46 ? C0Y 1YR 601 A 1 
HETATM 27 C C0Z 1YR . . . C 3 459.046 -23.008 121.847 1 89.46 ? C0Z 1YR 601 A 1 
HETATM 28 O O10 1YR . . . C 3 458.622 -25.067 118.947 1 89.46 ? O10 1YR 601 A 1 
HETATM 29 O O12 1YR . . . C 3 461.046 -25.855 122.643 1 89.46 ? O12 1YR 601 A 1 
HETATM 30 N N19 1YR . . . C 3 464.845 -19.591 128.522 1 89.46 ? N19 1YR 601 A 1 
#
_model_server_stats.io_time_ms              63 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           395 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           30 
#