data_4LST # _model_server_result.job_id et3vZfBgF5x0JCQDAmJIgg _model_server_result.datetime_utc '2024-10-17 11:28:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lst # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 4LST # _exptl.entry_id 4LST _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LST _cell.length_a 68.105 _cell.length_b 77.981 _cell.length_c 200.351 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LST _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 G CYS 54 1_555 A SG CYS 31 G CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 76 G CYS 119 1_555 A SG CYS 89 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 102 G CYS 218 1_555 A SG CYS 131 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 112 G CYS 228 1_555 A SG CYS 123 G CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 245 G CYS 378 1_555 A SG CYS 308 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 252 G CYS 385 1_555 A SG CYS 281 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf8 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 B SG CYS 32 H CYS 32 1_555 B SG CYS 102 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf10 B SG CYS 148 H CYS 140 1_555 B SG CYS 204 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf11 B SG CYS 224 H CYS 216 1_555 C SG CYS 210 L CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 C SG CYS 23 L CYS 23 1_555 C SG CYS 86 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf13 C SG CYS 130 L CYS 136 1_555 C SG CYS 190 L CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A ND2 ASN 114 G ASN 230 1_555 F C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 125 G ASN 241 1_555 G C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale3 A ND2 ASN 146 G ASN 262 1_555 D C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale4 A ND2 ASN 160 G ASN 276 1_555 E C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 A ND2 ASN 207 G ASN 339 1_555 K C1 NAG . G NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 A ND2 ASN 253 G ASN 386 1_555 H C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale7 A ND2 ASN 259 G ASN 392 1_555 J C1 NAG . G NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale8 A ND2 ASN 263 G ASN 396 1_555 I C1 NAG . G NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4LST _atom_sites.fract_transf_matrix[1][1] 0.014683 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012824 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004991 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG G 1 501 762 NAG NAG . E 4 NAG G 1 502 776 NAG NAG . F 4 NAG G 1 503 503 NAG NAG . G 4 NAG G 1 504 741 NAG NAG . H 4 NAG G 1 505 886 NAG NAG . I 4 NAG G 1 506 896 NAG NAG . J 4 NAG G 1 507 892 NAG NAG . K 4 NAG G 1 508 839 NAG NAG . L 5 HOH G 1 601 3 HOH HOH . L 5 HOH G 2 602 4 HOH HOH . L 5 HOH G 3 603 5 HOH HOH . L 5 HOH G 4 604 6 HOH HOH . L 5 HOH G 5 605 7 HOH HOH . L 5 HOH G 6 606 8 HOH HOH . L 5 HOH G 7 607 9 HOH HOH . L 5 HOH G 8 608 10 HOH HOH . L 5 HOH G 9 609 11 HOH HOH . L 5 HOH G 10 610 12 HOH HOH . L 5 HOH G 11 611 13 HOH HOH . L 5 HOH G 12 612 14 HOH HOH . L 5 HOH G 13 613 15 HOH HOH . L 5 HOH G 14 614 19 HOH HOH . L 5 HOH G 15 615 28 HOH HOH . L 5 HOH G 16 616 29 HOH HOH . L 5 HOH G 17 617 31 HOH HOH . L 5 HOH G 18 618 32 HOH HOH . L 5 HOH G 19 619 36 HOH HOH . L 5 HOH G 20 620 37 HOH HOH . L 5 HOH G 21 621 53 HOH HOH . L 5 HOH G 22 622 72 HOH HOH . L 5 HOH G 23 623 73 HOH HOH . L 5 HOH G 24 624 74 HOH HOH . L 5 HOH G 25 625 75 HOH HOH . M 5 HOH H 1 301 2 HOH HOH . M 5 HOH H 2 302 16 HOH HOH . M 5 HOH H 3 303 17 HOH HOH . M 5 HOH H 4 304 18 HOH HOH . M 5 HOH H 5 305 21 HOH HOH . M 5 HOH H 6 306 24 HOH HOH . M 5 HOH H 7 307 26 HOH HOH . M 5 HOH H 8 308 27 HOH HOH . M 5 HOH H 9 309 34 HOH HOH . M 5 HOH H 10 310 38 HOH HOH . M 5 HOH H 11 311 41 HOH HOH . M 5 HOH H 12 312 44 HOH HOH . M 5 HOH H 13 313 46 HOH HOH . M 5 HOH H 14 314 47 HOH HOH . M 5 HOH H 15 315 48 HOH HOH . M 5 HOH H 16 316 50 HOH HOH . M 5 HOH H 17 317 51 HOH HOH . M 5 HOH H 18 318 54 HOH HOH . M 5 HOH H 19 319 56 HOH HOH . M 5 HOH H 20 320 59 HOH HOH . M 5 HOH H 21 321 60 HOH HOH . M 5 HOH H 22 322 62 HOH HOH . M 5 HOH H 23 323 64 HOH HOH . M 5 HOH H 24 324 65 HOH HOH . M 5 HOH H 25 325 68 HOH HOH . M 5 HOH H 26 326 71 HOH HOH . M 5 HOH H 27 327 76 HOH HOH . N 5 HOH L 1 301 61 HOH HOH . N 5 HOH L 2 302 1 HOH HOH . N 5 HOH L 3 303 20 HOH HOH . N 5 HOH L 4 304 22 HOH HOH . N 5 HOH L 5 305 23 HOH HOH . N 5 HOH L 6 306 25 HOH HOH . N 5 HOH L 7 307 33 HOH HOH . N 5 HOH L 8 308 35 HOH HOH . N 5 HOH L 9 309 39 HOH HOH . N 5 HOH L 10 310 42 HOH HOH . N 5 HOH L 11 311 43 HOH HOH . N 5 HOH L 12 312 45 HOH HOH . N 5 HOH L 13 313 49 HOH HOH . N 5 HOH L 14 314 55 HOH HOH . N 5 HOH L 15 315 57 HOH HOH . N 5 HOH L 16 316 58 HOH HOH . N 5 HOH L 17 317 66 HOH HOH . N 5 HOH L 18 318 69 HOH HOH . N 5 HOH L 19 319 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . F 4 28.719 -13.617 17.359 1 130.6 ? C1 NAG 503 G 1 HETATM 2 C C2 NAG . . . F 4 27.389 -13.284 18.012 1 130.12 ? C2 NAG 503 G 1 HETATM 3 C C3 NAG . . . F 4 27.168 -14.138 19.233 1 124.46 ? C3 NAG 503 G 1 HETATM 4 C C4 NAG . . . F 4 27.193 -15.565 18.76 1 132.02 ? C4 NAG 503 G 1 HETATM 5 C C5 NAG . . . F 4 28.565 -15.82 18.192 1 131.94 ? C5 NAG 503 G 1 HETATM 6 C C6 NAG . . . F 4 28.683 -17.285 17.842 1 130.75 ? C6 NAG 503 G 1 HETATM 7 C C7 NAG . . . F 4 27.083 -11.164 19.245 1 129.61 ? C7 NAG 503 G 1 HETATM 8 C C8 NAG . . . F 4 27.796 -10.378 20.337 1 125.24 ? C8 NAG 503 G 1 HETATM 9 N N2 NAG . . . F 4 27.833 -12.003 18.526 1 128.32 ? N2 NAG 503 G 1 HETATM 10 O O3 NAG . . . F 4 25.901 -13.852 19.809 1 106.8 ? O3 NAG 503 G 1 HETATM 11 O O4 NAG . . . F 4 26.947 -16.437 19.854 1 125.81 ? O4 NAG 503 G 1 HETATM 12 O O5 NAG . . . F 4 28.743 -15.002 17.041 1 136.08 ? O5 NAG 503 G 1 HETATM 13 O O6 NAG . . . F 4 29.994 -17.504 17.33 1 126.37 ? O6 NAG 503 G 1 HETATM 14 O O7 NAG . . . F 4 25.966 -10.978 19.064 1 125.04 ? O7 NAG 503 G 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #