data_4LSV
#
_model_server_result.job_id            4z9SMTYiC-gTIcDe6BHSRg 
_model_server_result.datetime_utc      '2024-11-23 17:12:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lsv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":507}' 
#
_entry.id    4LSV 
#
_exptl.entry_id    4LSV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LSV 
_cell.length_a            191.615 
_cell.length_b            191.615 
_cell.length_c            103.95 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LSV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 G CYS 54 1_555 A SG CYS 31 G CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 76 G CYS 119 1_555 A SG CYS 89 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 102 G CYS 218 1_555 A SG CYS 131 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 112 G CYS 228 1_555 A SG CYS 123 G CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf5 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 A SG CYS 245 G CYS 378 1_555 A SG CYS 309 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 A SG CYS 252 G CYS 385 1_555 A SG CYS 282 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 B SG CYS 22 H CYS 22 1_555 B SG CYS 100 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf9 B SG CYS 150 H CYS 140 1_555 B SG CYS 206 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 C SG CYS 23 L CYS 23 1_555 C SG CYS 84 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf11 C SG CYS 126 L CYS 134 1_555 C SG CYS 186 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
covale ? covale1 A ND2 ASN 118 G ASN 234 1_555 D C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 A ND2 ASN 125 G ASN 241 1_555 E C1 NAG . G NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale3 A ND2 ASN 146 G ASN 262 1_555 F C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale4 A ND2 ASN 160 G ASN 276 1_555 G C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 A ND2 ASN 173 G ASN 289 1_555 H C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale6 A ND2 ASN 207 G ASN 339 1_555 I C1 NAG . G NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale7 A ND2 ASN 253 G ASN 386 1_555 J C1 NAG . G NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? 
covale ? covale8 A ND2 ASN 259 G ASN 392 1_555 K C1 NAG . G NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale9 A ND2 ASN 264 G ASN 397 1_555 L C1 NAG . G NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale10 A ND2 ASN 312 G ASN 448 1_555 M C1 NAG . G NAG 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale11 C ND2 ASN 68 L ASN 72 1_555 N C1 NAG . L NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 247 n n 
C1 O1 NAG sing 248 n n 
C1 O5 NAG sing 249 n n 
C1 H1 NAG sing 250 n n 
C2 C3 NAG sing 251 n n 
C2 N2 NAG sing 252 n n 
C2 H2 NAG sing 253 n n 
C3 C4 NAG sing 254 n n 
C3 O3 NAG sing 255 n n 
C3 H3 NAG sing 256 n n 
C4 C5 NAG sing 257 n n 
C4 O4 NAG sing 258 n n 
C4 H4 NAG sing 259 n n 
C5 C6 NAG sing 260 n n 
C5 O5 NAG sing 261 n n 
C5 H5 NAG sing 262 n n 
C6 O6 NAG sing 263 n n 
C6 H61 NAG sing 264 n n 
C6 H62 NAG sing 265 n n 
C7 C8 NAG sing 266 n n 
C7 N2 NAG sing 267 n n 
C7 O7 NAG doub 268 n n 
C8 H81 NAG sing 269 n n 
C8 H82 NAG sing 270 n n 
C8 H83 NAG sing 271 n n 
N2 HN2 NAG sing 272 n n 
O1 HO1 NAG sing 273 n n 
O3 HO3 NAG sing 274 n n 
O4 HO4 NAG sing 275 n n 
O6 HO6 NAG sing 276 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4LSV 
_atom_sites.fract_transf_matrix[1][1]    0.005219 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005219 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00962 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NAG G 1 501 734 NAG NAG . 
E 4 NAG G 1 502 741 NAG NAG . 
F 4 NAG G 1 503 762 NAG NAG . 
G 4 NAG G 1 504 776 NAG NAG . 
H 4 NAG G 1 505 505 NAG NAG . 
I 4 NAG G 1 506 839 NAG NAG . 
J 4 NAG G 1 507 886 NAG NAG . 
K 4 NAG G 1 508 892 NAG NAG . 
L 4 NAG G 1 509 897 NAG NAG . 
M 4 NAG G 1 510 948 NAG NAG . 
N 4 NAG L 1 301 572 NAG NAG . 
O 5 IMD L 1 302 900 IMD IMD . 
P 6 HOH G 1 601 4 HOH HOH . 
P 6 HOH G 2 602 11 HOH HOH . 
P 6 HOH G 3 603 13 HOH HOH . 
P 6 HOH G 4 604 21 HOH HOH . 
P 6 HOH G 5 605 22 HOH HOH . 
P 6 HOH G 6 606 25 HOH HOH . 
P 6 HOH G 7 607 29 HOH HOH . 
P 6 HOH G 8 608 30 HOH HOH . 
P 6 HOH G 9 609 32 HOH HOH . 
P 6 HOH G 10 610 34 HOH HOH . 
P 6 HOH G 11 611 36 HOH HOH . 
P 6 HOH G 12 612 41 HOH HOH . 
P 6 HOH G 13 613 43 HOH HOH . 
P 6 HOH G 14 614 44 HOH HOH . 
P 6 HOH G 15 615 49 HOH HOH . 
P 6 HOH G 16 616 52 HOH HOH . 
P 6 HOH G 17 617 62 HOH HOH . 
P 6 HOH G 18 618 65 HOH HOH . 
P 6 HOH G 19 619 67 HOH HOH . 
P 6 HOH G 20 620 70 HOH HOH . 
P 6 HOH G 21 621 71 HOH HOH . 
P 6 HOH G 22 622 72 HOH HOH . 
P 6 HOH G 23 623 73 HOH HOH . 
P 6 HOH G 24 624 76 HOH HOH . 
P 6 HOH G 25 625 81 HOH HOH . 
P 6 HOH G 26 626 82 HOH HOH . 
P 6 HOH G 27 627 84 HOH HOH . 
P 6 HOH G 28 628 116 HOH HOH . 
P 6 HOH G 29 629 121 HOH HOH . 
P 6 HOH G 30 630 126 HOH HOH . 
Q 6 HOH H 1 301 3 HOH HOH . 
Q 6 HOH H 2 302 5 HOH HOH . 
Q 6 HOH H 3 303 12 HOH HOH . 
Q 6 HOH H 4 304 20 HOH HOH . 
Q 6 HOH H 5 305 35 HOH HOH . 
Q 6 HOH H 6 306 39 HOH HOH . 
Q 6 HOH H 7 307 40 HOH HOH . 
Q 6 HOH H 8 308 46 HOH HOH . 
Q 6 HOH H 9 309 47 HOH HOH . 
Q 6 HOH H 10 310 51 HOH HOH . 
Q 6 HOH H 11 311 56 HOH HOH . 
Q 6 HOH H 12 312 58 HOH HOH . 
Q 6 HOH H 13 313 59 HOH HOH . 
Q 6 HOH H 14 314 61 HOH HOH . 
Q 6 HOH H 15 315 66 HOH HOH . 
Q 6 HOH H 16 316 91 HOH HOH . 
Q 6 HOH H 17 317 103 HOH HOH . 
Q 6 HOH H 18 318 108 HOH HOH . 
Q 6 HOH H 19 319 113 HOH HOH . 
Q 6 HOH H 20 320 118 HOH HOH . 
Q 6 HOH H 21 321 123 HOH HOH . 
Q 6 HOH H 22 322 124 HOH HOH . 
Q 6 HOH H 23 323 129 HOH HOH . 
Q 6 HOH H 24 324 130 HOH HOH . 
R 6 HOH L 1 401 6 HOH HOH . 
R 6 HOH L 2 402 8 HOH HOH . 
R 6 HOH L 3 403 9 HOH HOH . 
R 6 HOH L 4 404 18 HOH HOH . 
R 6 HOH L 5 405 27 HOH HOH . 
R 6 HOH L 6 406 33 HOH HOH . 
R 6 HOH L 7 407 42 HOH HOH . 
R 6 HOH L 8 408 48 HOH HOH . 
R 6 HOH L 9 409 57 HOH HOH . 
R 6 HOH L 10 410 63 HOH HOH . 
R 6 HOH L 11 411 75 HOH HOH . 
R 6 HOH L 12 412 85 HOH HOH . 
R 6 HOH L 13 413 86 HOH HOH . 
R 6 HOH L 14 414 89 HOH HOH . 
R 6 HOH L 15 415 90 HOH HOH . 
R 6 HOH L 16 416 93 HOH HOH . 
R 6 HOH L 17 417 95 HOH HOH . 
R 6 HOH L 18 418 110 HOH HOH . 
R 6 HOH L 19 419 114 HOH HOH . 
R 6 HOH L 20 420 115 HOH HOH . 
R 6 HOH L 21 421 128 HOH HOH . 
R 6 HOH L 22 422 131 HOH HOH . 
R 6 HOH L 23 423 132 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 4 -59.472 -69.481 -7.693 1 52.52 ? C1 NAG 507 G 1 
HETATM 2 C C2 NAG . . . J 4 -60.214 -68.775 -6.559 1 54.02 ? C2 NAG 507 G 1 
HETATM 3 C C3 NAG . . . J 4 -59.43 -67.582 -6.023 1 54.99 ? C3 NAG 507 G 1 
HETATM 4 C C4 NAG . . . J 4 -57.982 -67.967 -5.748 1 56.6 ? C4 NAG 507 G 1 
HETATM 5 C C5 NAG . . . J 4 -57.384 -68.661 -6.965 1 57.99 ? C5 NAG 507 G 1 
HETATM 6 C C6 NAG . . . J 4 -55.942 -69.071 -6.7 1 59.8 ? C6 NAG 507 G 1 
HETATM 7 C C7 NAG . . . J 4 -62.622 -68.69 -6.334 1 58.26 ? C7 NAG 507 G 1 
HETATM 8 C C8 NAG . . . J 4 -63.765 -67.719 -6.372 1 54.09 ? C8 NAG 507 G 1 
HETATM 9 N N2 NAG . . . J 4 -61.525 -68.347 -7.004 1 57.15 ? N2 NAG 507 G 1 
HETATM 10 O O3 NAG . . . J 4 -60.03 -67.119 -4.834 1 54.14 ? O3 NAG 507 G 1 
HETATM 11 O O4 NAG . . . J 4 -57.23 -66.814 -5.438 1 55.63 ? O4 NAG 507 G 1 
HETATM 12 O O5 NAG . . . J 4 -58.153 -69.799 -7.294 1 57.57 ? O5 NAG 507 G 1 
HETATM 13 O O6 NAG . . . J 4 -55.886 -69.795 -5.493 1 61.76 ? O6 NAG 507 G 1 
HETATM 14 O O7 NAG . . . J 4 -62.716 -69.742 -5.703 1 61.36 ? O7 NAG 507 G 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           14 
#