data_4LT0 # _model_server_result.job_id DiFYpDK8nmpHYvn69Bi3wQ _model_server_result.datetime_utc '2024-11-28 12:33:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":206}' # _entry.id 4LT0 # _exptl.entry_id 4LT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LT0 _cell.length_a 76.745 _cell.length_b 76.745 _cell.length_c 36.315 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc1 A ND1 HIS 15 A HIS 15 1_555 E PT1 QPT . A QPT 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 246 n n C1 H11 MPD sing 247 n n C1 H12 MPD sing 248 n n C1 H13 MPD sing 249 n n C2 O2 MPD sing 250 n n C2 CM MPD sing 251 n n C2 C3 MPD sing 252 n n O2 HO2 MPD sing 253 n n CM HM1 MPD sing 254 n n CM HM2 MPD sing 255 n n CM HM3 MPD sing 256 n n C3 C4 MPD sing 257 n n C3 H31 MPD sing 258 n n C3 H32 MPD sing 259 n n C4 O4 MPD sing 260 n n C4 C5 MPD sing 261 n n C4 H4 MPD sing 262 n n O4 HO4 MPD sing 263 n n C5 H51 MPD sing 264 n n C5 H52 MPD sing 265 n n C5 H53 MPD sing 266 n n # _atom_sites.entry_id 4LT0 _atom_sites.fract_transf_matrix[1][1] 0.01303 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 1 DMS DMS . C 2 DMS A 1 202 2 DMS DMS . D 2 DMS A 1 203 3 DMS DMS . E 3 QPT A 1 204 1 QPT QPT . F 2 DMS A 1 205 1 DMS DMS . G 4 MPD A 1 206 1 MPD MPD . H 4 MPD A 1 207 2 MPD MPD . I 5 HOH A 1 301 1 HOH HOH . I 5 HOH A 2 302 2 HOH HOH . I 5 HOH A 3 303 3 HOH HOH . I 5 HOH A 4 304 4 HOH HOH . I 5 HOH A 5 305 5 HOH HOH . I 5 HOH A 6 306 6 HOH HOH . I 5 HOH A 7 307 7 HOH HOH . I 5 HOH A 8 308 8 HOH HOH . I 5 HOH A 9 309 9 HOH HOH . I 5 HOH A 10 310 10 HOH HOH . I 5 HOH A 11 311 11 HOH HOH . I 5 HOH A 12 312 12 HOH HOH . I 5 HOH A 13 313 13 HOH HOH . I 5 HOH A 14 314 14 HOH HOH . I 5 HOH A 15 315 15 HOH HOH . I 5 HOH A 16 316 16 HOH HOH . I 5 HOH A 17 317 17 HOH HOH . I 5 HOH A 18 318 18 HOH HOH . I 5 HOH A 19 319 19 HOH HOH . I 5 HOH A 20 320 20 HOH HOH . I 5 HOH A 21 321 21 HOH HOH . I 5 HOH A 22 322 22 HOH HOH . I 5 HOH A 23 323 23 HOH HOH . I 5 HOH A 24 324 24 HOH HOH . I 5 HOH A 25 325 25 HOH HOH . I 5 HOH A 26 326 26 HOH HOH . I 5 HOH A 27 327 27 HOH HOH . I 5 HOH A 28 328 28 HOH HOH . I 5 HOH A 29 329 29 HOH HOH . I 5 HOH A 30 330 30 HOH HOH . I 5 HOH A 31 331 31 HOH HOH . I 5 HOH A 32 332 32 HOH HOH . I 5 HOH A 33 333 33 HOH HOH . I 5 HOH A 34 334 34 HOH HOH . I 5 HOH A 35 335 35 HOH HOH . I 5 HOH A 36 336 36 HOH HOH . I 5 HOH A 37 337 37 HOH HOH . I 5 HOH A 38 338 38 HOH HOH . I 5 HOH A 39 339 39 HOH HOH . I 5 HOH A 40 340 40 HOH HOH . I 5 HOH A 41 341 41 HOH HOH . I 5 HOH A 42 342 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . G 4 -9.672 -7.411 -15.738 1 64.8 ? C1 MPD 206 A 1 HETATM 2 C C2 MPD . . . G 4 -9.206 -8.644 -16.519 1 66.41 ? C2 MPD 206 A 1 HETATM 3 O O2 MPD . . . G 4 -10.046 -8.81 -17.667 0.5 48.23 ? O2 MPD 206 A 1 HETATM 4 C CM MPD . . . G 4 -7.741 -8.413 -16.851 1 75.98 ? CM MPD 206 A 1 HETATM 5 C C3 MPD . . . G 4 -9.223 -9.99 -15.802 1 61.16 ? C3 MPD 206 A 1 HETATM 6 C C4 MPD . . . G 4 -10.629 -10.548 -15.641 1 56.21 ? C4 MPD 206 A 1 HETATM 7 O O4 MPD . . . G 4 -10.749 -11.94 -16.005 1 45.93 ? O4 MPD 206 A 1 HETATM 8 C C5 MPD . . . G 4 -10.938 -10.281 -14.182 1 57.17 ? C5 MPD 206 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #