data_4LT6 # _model_server_result.job_id ygYFRrS2-IwFxPlkF7YdXg _model_server_result.datetime_utc '2024-11-25 09:19:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4LT6 # _exptl.entry_id 4LT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LT6 _cell.length_a 68.87 _cell.length_b 89.92 _cell.length_c 201.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 118 A ASP 112 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A OD2 ASP 120 A ASP 114 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 C O2G 3AT . A 3AT 601 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 C O1B 3AT . A 3AT 601 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc5 C O1A 3AT . A 3AT 601 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc6 B OD1 ASP 118 B ASP 112 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc7 B OD2 ASP 120 B ASP 114 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc8 E O1G 3AT . B 3AT 601 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 E O1B 3AT . B 3AT 601 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 E O1A 3AT . B 3AT 601 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id 3AT _chem_comp.mon_nstd_flag . _chem_comp.name "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CORDYCEPIN TRIPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G 3AT doub 1 n n PG O2G 3AT sing 2 n n PG O3G 3AT sing 3 n n PG O3B 3AT sing 4 n n O2G HOG2 3AT sing 5 n n O3G HOG3 3AT sing 6 n n PB O1B 3AT doub 7 n n PB O2B 3AT sing 8 n n PB O3B 3AT sing 9 n n PB O3A 3AT sing 10 n n O2B HOB2 3AT sing 11 n n PA O1A 3AT doub 12 n n PA O2A 3AT sing 13 n n PA O3A 3AT sing 14 n n PA O5' 3AT sing 15 n n O2A HOA2 3AT sing 16 n n O5' C5' 3AT sing 17 n n C5' C4' 3AT sing 18 n n C5' "H5'1" 3AT sing 19 n n C5' "H5'2" 3AT sing 20 n n C4' O4' 3AT sing 21 n n C4' C3' 3AT sing 22 n n C4' H4' 3AT sing 23 n n O4' C1' 3AT sing 24 n n C3' C2' 3AT sing 25 n n C3' "H3'1" 3AT sing 26 n n C3' "H3'2" 3AT sing 27 n n C2' O2' 3AT sing 28 n n C2' C1' 3AT sing 29 n n C2' "H2'1" 3AT sing 30 n n O2' HO2' 3AT sing 31 n n C1' N9 3AT sing 32 n n C1' H1' 3AT sing 33 n n N9 C8 3AT sing 34 n y N9 C4 3AT sing 35 n y C8 N7 3AT doub 36 n y C8 H8 3AT sing 37 n n N7 C5 3AT sing 38 n y C5 C6 3AT sing 39 n y C5 C4 3AT doub 40 n y C6 N6 3AT sing 41 n n C6 N1 3AT doub 42 n y N6 HN61 3AT sing 43 n n N6 HN62 3AT sing 44 n n N1 C2 3AT sing 45 n y C2 N3 3AT doub 46 n y C2 H2 3AT sing 47 n n N3 C4 3AT sing 48 n y # _atom_sites.entry_id 4LT6 _atom_sites.fract_transf_matrix[1][1] 0.01452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3AT A 1 601 1 3AT 3AT . D 3 CA A 1 602 1 CA CA . E 2 3AT B 1 601 2 3AT 3AT . F 3 CA B 1 602 1 CA CA . G 4 HOH A 1 701 4 HOH HOH . G 4 HOH A 2 702 5 HOH HOH . G 4 HOH A 3 703 6 HOH HOH . G 4 HOH A 4 704 7 HOH HOH . G 4 HOH A 5 705 8 HOH HOH . G 4 HOH A 6 706 9 HOH HOH . G 4 HOH A 7 707 10 HOH HOH . G 4 HOH A 8 708 11 HOH HOH . G 4 HOH A 9 709 12 HOH HOH . G 4 HOH A 10 710 20 HOH HOH . G 4 HOH A 11 711 21 HOH HOH . G 4 HOH A 12 712 22 HOH HOH . G 4 HOH A 13 713 23 HOH HOH . G 4 HOH A 14 714 30 HOH HOH . G 4 HOH A 15 715 31 HOH HOH . G 4 HOH A 16 716 32 HOH HOH . G 4 HOH A 17 717 33 HOH HOH . G 4 HOH A 18 718 34 HOH HOH . G 4 HOH A 19 719 35 HOH HOH . G 4 HOH A 20 720 37 HOH HOH . G 4 HOH A 21 721 38 HOH HOH . G 4 HOH A 22 722 49 HOH HOH . G 4 HOH A 23 723 54 HOH HOH . G 4 HOH A 24 724 55 HOH HOH . G 4 HOH A 25 725 56 HOH HOH . G 4 HOH A 26 726 58 HOH HOH . G 4 HOH A 27 727 59 HOH HOH . H 4 HOH B 1 701 1 HOH HOH . H 4 HOH B 2 702 2 HOH HOH . H 4 HOH B 3 703 3 HOH HOH . H 4 HOH B 4 704 13 HOH HOH . H 4 HOH B 5 705 14 HOH HOH . H 4 HOH B 6 706 15 HOH HOH . H 4 HOH B 7 707 16 HOH HOH . H 4 HOH B 8 708 17 HOH HOH . H 4 HOH B 9 709 18 HOH HOH . H 4 HOH B 10 710 24 HOH HOH . H 4 HOH B 11 711 25 HOH HOH . H 4 HOH B 12 712 26 HOH HOH . H 4 HOH B 13 713 27 HOH HOH . H 4 HOH B 14 714 28 HOH HOH . H 4 HOH B 15 715 29 HOH HOH . H 4 HOH B 16 716 36 HOH HOH . H 4 HOH B 17 717 39 HOH HOH . H 4 HOH B 18 718 40 HOH HOH . H 4 HOH B 19 719 41 HOH HOH . H 4 HOH B 20 720 42 HOH HOH . H 4 HOH B 21 721 43 HOH HOH . H 4 HOH B 22 722 45 HOH HOH . H 4 HOH B 23 723 46 HOH HOH . H 4 HOH B 24 724 47 HOH HOH . H 4 HOH B 25 725 53 HOH HOH . H 4 HOH B 26 726 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG 3AT . . . C 2 -0.008 -5.682 -46.991 1 24.46 ? PG 3AT 601 A 1 HETATM 2 O O1G 3AT . . . C 2 -1.04 -6.474 -46.113 1 20.95 ? O1G 3AT 601 A 1 HETATM 3 O O2G 3AT . . . C 2 0.883 -6.717 -47.668 1 29.26 ? O2G 3AT 601 A 1 HETATM 4 O O3G 3AT . . . C 2 -0.748 -4.909 -48.025 1 26.76 ? O3G 3AT 601 A 1 HETATM 5 P PB 3AT . . . C 2 2.334 -4.154 -46.295 1 27.56 ? PB 3AT 601 A 1 HETATM 6 O O1B 3AT . . . C 2 3.215 -5.275 -46.836 1 28.39 ? O1B 3AT 601 A 1 HETATM 7 O O2B 3AT . . . C 2 2.893 -3.708 -44.844 1 21.9 ? O2B 3AT 601 A 1 HETATM 8 O O3B 3AT . . . C 2 0.789 -4.696 -46.097 1 23.83 ? O3B 3AT 601 A 1 HETATM 9 P PA 3AT . . . C 2 2.17 -2.808 -48.753 1 37.63 ? PA 3AT 601 A 1 HETATM 10 O O1A 3AT . . . C 2 1.701 -4.13 -49.301 1 32.35 ? O1A 3AT 601 A 1 HETATM 11 O O2A 3AT . . . C 2 1.053 -1.723 -48.918 1 22.12 ? O2A 3AT 601 A 1 HETATM 12 O O3A 3AT . . . C 2 2.469 -2.895 -47.187 1 24.82 ? O3A 3AT 601 A 1 HETATM 13 O O5' 3AT . . . C 2 3.43 -2.357 -49.509 1 28.49 ? O5' 3AT 601 A 1 HETATM 14 C C5' 3AT . . . C 2 4.469 -3.23 -49.905 1 26.18 ? C5' 3AT 601 A 1 HETATM 15 C C4' 3AT . . . C 2 5.838 -2.979 -49.504 1 25.89 ? C4' 3AT 601 A 1 HETATM 16 O O4' 3AT . . . C 2 6.296 -1.619 -49.854 1 28.35 ? O4' 3AT 601 A 1 HETATM 17 C C3' 3AT . . . C 2 5.994 -3.12 -48.043 1 24.49 ? C3' 3AT 601 A 1 HETATM 18 C C2' 3AT . . . C 2 5.945 -1.731 -47.535 1 27.55 ? C2' 3AT 601 A 1 HETATM 19 O O2' 3AT . . . C 2 6.645 -1.556 -46.411 1 24.24 ? O2' 3AT 601 A 1 HETATM 20 C C1' 3AT . . . C 2 6.488 -0.892 -48.657 1 25.82 ? C1' 3AT 601 A 1 HETATM 21 N N9 3AT . . . C 2 6.028 0.636 -48.734 1 19.75 ? N9 3AT 601 A 1 HETATM 22 C C8 3AT . . . C 2 4.884 1.086 -49.294 1 19.5 ? C8 3AT 601 A 1 HETATM 23 N N7 3AT . . . C 2 4.811 2.425 -49.148 1 18.13 ? N7 3AT 601 A 1 HETATM 24 C C5 3AT . . . C 2 5.918 2.827 -48.487 0.75 16.64 ? C5 3AT 601 A 1 HETATM 25 C C6 3AT . . . C 2 6.364 4.069 -48.072 0.75 11.65 ? C6 3AT 601 A 1 HETATM 26 N N6 3AT . . . C 2 5.581 5.227 -48.35 0.75 11.5 ? N6 3AT 601 A 1 HETATM 27 N N1 3AT . . . C 2 7.544 4.122 -47.421 0.75 17.26 ? N1 3AT 601 A 1 HETATM 28 C C2 3AT . . . C 2 8.276 3.026 -47.165 0.75 14.54 ? C2 3AT 601 A 1 HETATM 29 N N3 3AT . . . C 2 7.867 1.815 -47.552 0.75 13.55 ? N3 3AT 601 A 1 HETATM 30 C C4 3AT . . . C 2 6.699 1.688 -48.216 0.75 19 ? C4 3AT 601 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #