data_4LT6 # _model_server_result.job_id xCFoc-hjrmbq04EgARygyQ _model_server_result.datetime_utc '2024-11-25 09:28:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 4LT6 # _exptl.entry_id 4LT6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 491.182 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LT6 _cell.length_a 68.87 _cell.length_b 89.92 _cell.length_c 201.63 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 118 A ASP 112 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc2 A OD2 ASP 120 A ASP 114 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc3 C O2G 3AT . A 3AT 601 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc4 C O1B 3AT . A 3AT 601 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc5 C O1A 3AT . A 3AT 601 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.885 ? metalc ? metalc6 B OD1 ASP 118 B ASP 112 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc7 B OD2 ASP 120 B ASP 114 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc8 E O1G 3AT . B 3AT 601 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc9 E O1B 3AT . B 3AT 601 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 E O1A 3AT . B 3AT 601 1_555 F CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? # _chem_comp.formula 'C10 H16 N5 O12 P3' _chem_comp.formula_weight 491.182 _chem_comp.id 3AT _chem_comp.mon_nstd_flag . _chem_comp.name "3'-DEOXYADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CORDYCEPIN TRIPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G 3AT doub 1 n n PG O2G 3AT sing 2 n n PG O3G 3AT sing 3 n n PG O3B 3AT sing 4 n n O2G HOG2 3AT sing 5 n n O3G HOG3 3AT sing 6 n n PB O1B 3AT doub 7 n n PB O2B 3AT sing 8 n n PB O3B 3AT sing 9 n n PB O3A 3AT sing 10 n n O2B HOB2 3AT sing 11 n n PA O1A 3AT doub 12 n n PA O2A 3AT sing 13 n n PA O3A 3AT sing 14 n n PA O5' 3AT sing 15 n n O2A HOA2 3AT sing 16 n n O5' C5' 3AT sing 17 n n C5' C4' 3AT sing 18 n n C5' "H5'1" 3AT sing 19 n n C5' "H5'2" 3AT sing 20 n n C4' O4' 3AT sing 21 n n C4' C3' 3AT sing 22 n n C4' H4' 3AT sing 23 n n O4' C1' 3AT sing 24 n n C3' C2' 3AT sing 25 n n C3' "H3'1" 3AT sing 26 n n C3' "H3'2" 3AT sing 27 n n C2' O2' 3AT sing 28 n n C2' C1' 3AT sing 29 n n C2' "H2'1" 3AT sing 30 n n O2' HO2' 3AT sing 31 n n C1' N9 3AT sing 32 n n C1' H1' 3AT sing 33 n n N9 C8 3AT sing 34 n y N9 C4 3AT sing 35 n y C8 N7 3AT doub 36 n y C8 H8 3AT sing 37 n n N7 C5 3AT sing 38 n y C5 C6 3AT sing 39 n y C5 C4 3AT doub 40 n y C6 N6 3AT sing 41 n n C6 N1 3AT doub 42 n y N6 HN61 3AT sing 43 n n N6 HN62 3AT sing 44 n n N1 C2 3AT sing 45 n y C2 N3 3AT doub 46 n y C2 H2 3AT sing 47 n n N3 C4 3AT sing 48 n y # _atom_sites.entry_id 4LT6 _atom_sites.fract_transf_matrix[1][1] 0.01452 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00496 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3AT A 1 601 1 3AT 3AT . D 3 CA A 1 602 1 CA CA . E 2 3AT B 1 601 2 3AT 3AT . F 3 CA B 1 602 1 CA CA . G 4 HOH A 1 701 4 HOH HOH . G 4 HOH A 2 702 5 HOH HOH . G 4 HOH A 3 703 6 HOH HOH . G 4 HOH A 4 704 7 HOH HOH . G 4 HOH A 5 705 8 HOH HOH . G 4 HOH A 6 706 9 HOH HOH . G 4 HOH A 7 707 10 HOH HOH . G 4 HOH A 8 708 11 HOH HOH . G 4 HOH A 9 709 12 HOH HOH . G 4 HOH A 10 710 20 HOH HOH . G 4 HOH A 11 711 21 HOH HOH . G 4 HOH A 12 712 22 HOH HOH . G 4 HOH A 13 713 23 HOH HOH . G 4 HOH A 14 714 30 HOH HOH . G 4 HOH A 15 715 31 HOH HOH . G 4 HOH A 16 716 32 HOH HOH . G 4 HOH A 17 717 33 HOH HOH . G 4 HOH A 18 718 34 HOH HOH . G 4 HOH A 19 719 35 HOH HOH . G 4 HOH A 20 720 37 HOH HOH . G 4 HOH A 21 721 38 HOH HOH . G 4 HOH A 22 722 49 HOH HOH . G 4 HOH A 23 723 54 HOH HOH . G 4 HOH A 24 724 55 HOH HOH . G 4 HOH A 25 725 56 HOH HOH . G 4 HOH A 26 726 58 HOH HOH . G 4 HOH A 27 727 59 HOH HOH . H 4 HOH B 1 701 1 HOH HOH . H 4 HOH B 2 702 2 HOH HOH . H 4 HOH B 3 703 3 HOH HOH . H 4 HOH B 4 704 13 HOH HOH . H 4 HOH B 5 705 14 HOH HOH . H 4 HOH B 6 706 15 HOH HOH . H 4 HOH B 7 707 16 HOH HOH . H 4 HOH B 8 708 17 HOH HOH . H 4 HOH B 9 709 18 HOH HOH . H 4 HOH B 10 710 24 HOH HOH . H 4 HOH B 11 711 25 HOH HOH . H 4 HOH B 12 712 26 HOH HOH . H 4 HOH B 13 713 27 HOH HOH . H 4 HOH B 14 714 28 HOH HOH . H 4 HOH B 15 715 29 HOH HOH . H 4 HOH B 16 716 36 HOH HOH . H 4 HOH B 17 717 39 HOH HOH . H 4 HOH B 18 718 40 HOH HOH . H 4 HOH B 19 719 41 HOH HOH . H 4 HOH B 20 720 42 HOH HOH . H 4 HOH B 21 721 43 HOH HOH . H 4 HOH B 22 722 45 HOH HOH . H 4 HOH B 23 723 46 HOH HOH . H 4 HOH B 24 724 47 HOH HOH . H 4 HOH B 25 725 53 HOH HOH . H 4 HOH B 26 726 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG 3AT . . . E 2 -32.915 -6.855 -5.525 1 28.8 ? PG 3AT 601 B 1 HETATM 2 O O1G 3AT . . . E 2 -33.7 -6.119 -6.668 1 24.21 ? O1G 3AT 601 B 1 HETATM 3 O O2G 3AT . . . E 2 -31.916 -5.907 -4.868 1 24.67 ? O2G 3AT 601 B 1 HETATM 4 O O3G 3AT . . . E 2 -33.897 -7.292 -4.51 1 23.34 ? O3G 3AT 601 B 1 HETATM 5 P PB 3AT . . . E 2 -32.705 -9.1 -7.159 1 32.51 ? PB 3AT 601 B 1 HETATM 6 O O1B 3AT . . . E 2 -34.16 -8.762 -7.478 1 27.71 ? O1B 3AT 601 B 1 HETATM 7 O O2B 3AT . . . E 2 -32.561 -10.613 -6.617 1 20.8 ? O2B 3AT 601 B 1 HETATM 8 O O3B 3AT . . . E 2 -32.12 -8.069 -6.042 1 25.01 ? O3B 3AT 601 B 1 HETATM 9 P PA 3AT . . . E 2 -31.445 -7.751 -9.239 1 46.61 ? PA 3AT 601 B 1 HETATM 10 O O1A 3AT . . . E 2 -32.39 -6.613 -8.979 1 37.5 ? O1A 3AT 601 B 1 HETATM 11 O O2A 3AT . . . E 2 -29.999 -7.321 -8.842 1 28.21 ? O2A 3AT 601 B 1 HETATM 12 O O3A 3AT . . . E 2 -31.833 -9.061 -8.431 1 31.35 ? O3A 3AT 601 B 1 HETATM 13 O O5' 3AT . . . E 2 -31.538 -8.149 -10.711 1 36.77 ? O5' 3AT 601 B 1 HETATM 14 C C5' 3AT . . . E 2 -32.788 -8.502 -11.272 1 33.26 ? C5' 3AT 601 B 1 HETATM 15 C C4' 3AT . . . E 2 -33.03 -9.828 -11.8 1 35.35 ? C4' 3AT 601 B 1 HETATM 16 O O4' 3AT . . . E 2 -32.013 -10.244 -12.805 1 48.4 ? O4' 3AT 601 B 1 HETATM 17 C C3' 3AT . . . E 2 -33.027 -10.85 -10.731 1 30.63 ? C3' 3AT 601 B 1 HETATM 18 C C2' 3AT . . . E 2 -31.876 -11.751 -11.013 1 30.74 ? C2' 3AT 601 B 1 HETATM 19 O O2' 3AT . . . E 2 -32.211 -13.034 -10.966 1 34.91 ? O2' 3AT 601 B 1 HETATM 20 C C1' 3AT . . . E 2 -31.4 -11.451 -12.398 1 28.25 ? C1' 3AT 601 B 1 HETATM 21 N N9 3AT . . . E 2 -29.829 -11.535 -12.64 1 22.32 ? N9 3AT 601 B 1 HETATM 22 C C8 3AT . . . E 2 -28.943 -10.528 -12.464 1 21.98 ? C8 3AT 601 B 1 HETATM 23 N N7 3AT . . . E 2 -27.706 -10.996 -12.743 1 23.81 ? N7 3AT 601 B 1 HETATM 24 C C5 3AT . . . E 2 -27.809 -12.299 -13.106 0.75 20.91 ? C5 3AT 601 B 1 HETATM 25 C C6 3AT . . . E 2 -26.887 -13.269 -13.496 0.75 16.96 ? C6 3AT 601 B 1 HETATM 26 N N6 3AT . . . E 2 -25.49 -12.962 -13.567 0.75 17.8 ? N6 3AT 601 B 1 HETATM 27 N N1 3AT . . . E 2 -27.352 -14.501 -13.792 0.75 17.13 ? N1 3AT 601 B 1 HETATM 28 C C2 3AT . . . E 2 -28.651 -14.811 -13.721 0.75 16.75 ? C2 3AT 601 B 1 HETATM 29 N N3 3AT . . . E 2 -29.554 -13.898 -13.344 0.75 20.26 ? N3 3AT 601 B 1 HETATM 30 C C4 3AT . . . E 2 -29.167 -12.643 -13.034 0.75 23.68 ? C4 3AT 601 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 262 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #