data_4LTM
#
_model_server_result.job_id            o4MkntQIIOghJx8rlXPIDA 
_model_server_result.datetime_utc      '2024-11-04 22:37:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ltm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4LTM 
#
_exptl.entry_id    4LTM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4LTM 
_cell.length_a            101.27 
_cell.length_b            101.27 
_cell.length_c            130.22 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        181 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 101.27 0 0 
3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
4 'crystal symmetry operation' 11_655 -x+y+1,y,-z -1 0 0 0 1 0 0 0 -1 101.27 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SER 130 A SER 130 1_555 A N MSE 131 A MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? 
covale ? covale2 A C MSE 131 A MSE 131 1_555 A N GLY 132 A GLY 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 A C PHE 141 A PHE 141 1_555 A N MSE 142 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? 
covale ? covale4 A C MSE 142 A MSE 142 1_555 A N VAL 143 A VAL 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     4LTM 
_atom_sites.fract_transf_matrix[1][1]    0.009875 
_atom_sites.fract_transf_matrix[1][2]    0.005701 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011402 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007679 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMN A 1 201 500 FMN FMN . 
C 2 FMN A 1 202 501 FMN FMN . 
D 3 SO4 A 1 203 1 SO4 SO4 . 
E 4 HOH A 1 301 1 HOH HOH . 
E 4 HOH A 2 302 2 HOH HOH . 
E 4 HOH A 3 303 3 HOH HOH . 
E 4 HOH A 4 304 4 HOH HOH . 
E 4 HOH A 5 305 5 HOH HOH . 
E 4 HOH A 6 306 6 HOH HOH . 
E 4 HOH A 7 307 7 HOH HOH . 
E 4 HOH A 8 308 8 HOH HOH . 
E 4 HOH A 9 309 9 HOH HOH . 
E 4 HOH A 10 310 10 HOH HOH . 
E 4 HOH A 11 311 11 HOH HOH . 
E 4 HOH A 12 312 12 HOH HOH . 
E 4 HOH A 13 313 13 HOH HOH . 
E 4 HOH A 14 314 14 HOH HOH . 
E 4 HOH A 15 315 15 HOH HOH . 
E 4 HOH A 16 316 16 HOH HOH . 
E 4 HOH A 17 317 17 HOH HOH . 
E 4 HOH A 18 318 18 HOH HOH . 
E 4 HOH A 19 319 19 HOH HOH . 
E 4 HOH A 20 320 20 HOH HOH . 
E 4 HOH A 21 321 21 HOH HOH . 
E 4 HOH A 22 322 22 HOH HOH . 
E 4 HOH A 23 323 23 HOH HOH . 
E 4 HOH A 24 324 24 HOH HOH . 
E 4 HOH A 25 325 25 HOH HOH . 
E 4 HOH A 26 326 26 HOH HOH . 
E 4 HOH A 27 327 27 HOH HOH . 
E 4 HOH A 28 328 28 HOH HOH . 
E 4 HOH A 29 329 29 HOH HOH . 
E 4 HOH A 30 330 30 HOH HOH . 
E 4 HOH A 31 331 31 HOH HOH . 
E 4 HOH A 32 332 32 HOH HOH . 
E 4 HOH A 33 333 33 HOH HOH . 
E 4 HOH A 34 334 34 HOH HOH . 
E 4 HOH A 35 335 35 HOH HOH . 
E 4 HOH A 36 336 36 HOH HOH . 
E 4 HOH A 37 337 37 HOH HOH . 
E 4 HOH A 38 338 38 HOH HOH . 
E 4 HOH A 39 339 39 HOH HOH . 
E 4 HOH A 40 340 40 HOH HOH . 
E 4 HOH A 41 341 41 HOH HOH . 
E 4 HOH A 42 342 42 HOH HOH . 
E 4 HOH A 43 343 43 HOH HOH . 
E 4 HOH A 44 344 44 HOH HOH . 
E 4 HOH A 45 345 45 HOH HOH . 
E 4 HOH A 46 346 46 HOH HOH . 
E 4 HOH A 47 347 47 HOH HOH . 
E 4 HOH A 48 348 48 HOH HOH . 
E 4 HOH A 49 349 49 HOH HOH . 
E 4 HOH A 50 350 50 HOH HOH . 
E 4 HOH A 51 351 51 HOH HOH . 
E 4 HOH A 52 352 52 HOH HOH . 
E 4 HOH A 53 353 53 HOH HOH . 
E 4 HOH A 54 354 54 HOH HOH . 
E 4 HOH A 55 355 55 HOH HOH . 
E 4 HOH A 56 356 56 HOH HOH . 
E 4 HOH A 57 357 57 HOH HOH . 
E 4 HOH A 58 358 58 HOH HOH . 
E 4 HOH A 59 359 59 HOH HOH . 
E 4 HOH A 60 360 60 HOH HOH . 
E 4 HOH A 61 361 61 HOH HOH . 
E 4 HOH A 62 362 62 HOH HOH . 
E 4 HOH A 63 363 63 HOH HOH . 
E 4 HOH A 64 364 64 HOH HOH . 
E 4 HOH A 65 365 65 HOH HOH . 
E 4 HOH A 66 366 66 HOH HOH . 
E 4 HOH A 67 367 67 HOH HOH . 
E 4 HOH A 68 368 68 HOH HOH . 
E 4 HOH A 69 369 69 HOH HOH . 
E 4 HOH A 70 370 70 HOH HOH . 
E 4 HOH A 71 371 71 HOH HOH . 
E 4 HOH A 72 372 72 HOH HOH . 
E 4 HOH A 73 373 73 HOH HOH . 
E 4 HOH A 74 374 74 HOH HOH . 
E 4 HOH A 75 375 75 HOH HOH . 
E 4 HOH A 76 376 76 HOH HOH . 
E 4 HOH A 77 377 77 HOH HOH . 
E 4 HOH A 78 378 78 HOH HOH . 
E 4 HOH A 79 379 79 HOH HOH . 
E 4 HOH A 80 380 80 HOH HOH . 
E 4 HOH A 81 381 81 HOH HOH . 
E 4 HOH A 82 382 82 HOH HOH . 
E 4 HOH A 83 383 83 HOH HOH . 
E 4 HOH A 84 384 84 HOH HOH . 
E 4 HOH A 85 385 85 HOH HOH . 
E 4 HOH A 86 386 86 HOH HOH . 
E 4 HOH A 87 387 87 HOH HOH . 
E 4 HOH A 88 388 88 HOH HOH . 
E 4 HOH A 89 389 89 HOH HOH . 
E 4 HOH A 90 390 90 HOH HOH . 
E 4 HOH A 91 391 91 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . B 2 64.997 1.889 -10.367 1 25.9 ? N1 FMN 201 A 1 
HETATM 2 C C2 FMN . . . B 2 64.564 1.945 -8.992 1 22.91 ? C2 FMN 201 A 1 
HETATM 3 O O2 FMN . . . B 2 65.261 1.233 -8.014 1 28.6 ? O2 FMN 201 A 1 
HETATM 4 N N3 FMN . . . B 2 63.447 2.708 -8.648 1 26.11 ? N3 FMN 201 A 1 
HETATM 5 C C4 FMN . . . B 2 62.753 3.416 -9.591 1 24.17 ? C4 FMN 201 A 1 
HETATM 6 O O4 FMN . . . B 2 61.628 4.168 -9.24 1 29.38 ? O4 FMN 201 A 1 
HETATM 7 C C4A FMN . . . B 2 63.178 3.345 -10.999 1 24.17 ? C4A FMN 201 A 1 
HETATM 8 N N5 FMN . . . B 2 62.464 4.018 -11.972 1 27.06 ? N5 FMN 201 A 1 
HETATM 9 C C5A FMN . . . B 2 62.906 3.895 -13.301 1 30.43 ? C5A FMN 201 A 1 
HETATM 10 C C6 FMN . . . B 2 62.198 4.574 -14.307 1 27.67 ? C6 FMN 201 A 1 
HETATM 11 C C7 FMN . . . B 2 62.627 4.451 -15.633 1 31.97 ? C7 FMN 201 A 1 
HETATM 12 C C7M FMN . . . B 2 61.867 5.179 -16.742 1 28.3 ? C7M FMN 201 A 1 
HETATM 13 C C8 FMN . . . B 2 63.75 3.674 -15.947 1 31.43 ? C8 FMN 201 A 1 
HETATM 14 C C8M FMN . . . B 2 64.225 3.548 -17.385 1 23.87 ? C8M FMN 201 A 1 
HETATM 15 C C9 FMN . . . B 2 64.449 3.004 -14.942 1 27.72 ? C9 FMN 201 A 1 
HETATM 16 C C9A FMN . . . B 2 64.036 3.11 -13.628 1 28.56 ? C9A FMN 201 A 1 
HETATM 17 N N10 FMN . . . B 2 64.744 2.431 -12.609 1 25.02 ? N10 FMN 201 A 1 
HETATM 18 C C10 FMN . . . B 2 64.285 2.572 -11.329 1 25.38 ? C10 FMN 201 A 1 
HETATM 19 C C1' FMN . . . B 2 65.913 1.593 -12.852 1 26.55 ? C1' FMN 201 A 1 
HETATM 20 C C2' FMN . . . B 2 65.479 0.199 -13.315 1 26.13 ? C2' FMN 201 A 1 
HETATM 21 O O2' FMN . . . B 2 64.581 -0.396 -12.414 1 22.4 ? O2' FMN 201 A 1 
HETATM 22 C C3' FMN . . . B 2 66.714 -0.686 -13.494 1 30.55 ? C3' FMN 201 A 1 
HETATM 23 O O3' FMN . . . B 2 67.479 -0.226 -14.335 1 33.46 ? O3' FMN 201 A 1 
HETATM 24 C C4' FMN . . . B 2 66.196 -2.065 -13.909 1 27.42 ? C4' FMN 201 A 1 
HETATM 25 O O4' FMN . . . B 2 67.12 -3.051 -13.572 1 23.95 ? O4' FMN 201 A 1 
HETATM 26 C C5' FMN . . . B 2 65.933 -2.104 -15.406 1 23.88 ? C5' FMN 201 A 1 
HETATM 27 O O5' FMN . . . B 2 65.632 -3.459 -15.714 1 26.18 ? O5' FMN 201 A 1 
HETATM 28 P P FMN . . . B 2 65.48 -3.98 -17.218 1 22.7 ? P FMN 201 A 1 
HETATM 29 O O1P FMN . . . B 2 66.784 -4.192 -17.896 1 27.34 ? O1P FMN 201 A 1 
HETATM 30 O O2P FMN . . . B 2 64.789 -5.297 -17.334 1 18.33 ? O2P FMN 201 A 1 
HETATM 31 O O3P FMN . . . B 2 64.698 -3.048 -18.069 1 24.33 ? O3P FMN 201 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           249 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#