data_4LTN # _model_server_result.job_id 067WAFkhGBcTd18bVa_s_A _model_server_result.datetime_utc '2024-11-04 23:26:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ltn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4LTN # _exptl.entry_id 4LTN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 665.441 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LTN _cell.length_a 101.18 _cell.length_b 101.18 _cell.length_c 129.71 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 50.59 87.62445 0 3 'crystal symmetry operation' 7_556 y,x,-z+4/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 172.946667 4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+4/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 50.59 87.62445 172.946667 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 130 A SER 130 1_555 A N MSE 131 A MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 131 A MSE 131 1_555 A N GLY 132 A GLY 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PHE 141 A PHE 141 1_555 A N MSE 142 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 142 A MSE 142 1_555 A N VAL 143 A VAL 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C21 H29 N7 O14 P2' _chem_comp.formula_weight 665.441 _chem_comp.id NAI _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NADH # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAI doub 291 n n PA O2A NAI sing 292 n n PA O5B NAI sing 293 n n PA O3 NAI sing 294 n n O2A HOA2 NAI sing 295 n n O5B C5B NAI sing 296 n n C5B C4B NAI sing 297 n n C5B H51A NAI sing 298 n n C5B H52A NAI sing 299 n n C4B O4B NAI sing 300 n n C4B C3B NAI sing 301 n n C4B H4B NAI sing 302 n n O4B C1B NAI sing 303 n n C3B O3B NAI sing 304 n n C3B C2B NAI sing 305 n n C3B H3B NAI sing 306 n n O3B HO3A NAI sing 307 n n C2B O2B NAI sing 308 n n C2B C1B NAI sing 309 n n C2B H2B NAI sing 310 n n O2B HO2A NAI sing 311 n n C1B N9A NAI sing 312 n n C1B H1B NAI sing 313 n n N9A C8A NAI sing 314 n y N9A C4A NAI sing 315 n y C8A N7A NAI doub 316 n y C8A H8A NAI sing 317 n n N7A C5A NAI sing 318 n y C5A C6A NAI sing 319 n y C5A C4A NAI doub 320 n y C6A N6A NAI sing 321 n n C6A N1A NAI doub 322 n y N6A H61A NAI sing 323 n n N6A H62A NAI sing 324 n n N1A C2A NAI sing 325 n y C2A N3A NAI doub 326 n y C2A H2A NAI sing 327 n n N3A C4A NAI sing 328 n y O3 PN NAI sing 329 n n PN O1N NAI sing 330 n n PN O2N NAI doub 331 n n PN O5D NAI sing 332 n n O1N HO1N NAI sing 333 n n O5D C5D NAI sing 334 n n C5D C4D NAI sing 335 n n C5D H51N NAI sing 336 n n C5D H52N NAI sing 337 n n C4D O4D NAI sing 338 n n C4D C3D NAI sing 339 n n C4D H4D NAI sing 340 n n O4D C1D NAI sing 341 n n C3D O3D NAI sing 342 n n C3D C2D NAI sing 343 n n C3D H3D NAI sing 344 n n O3D HO3N NAI sing 345 n n C2D O2D NAI sing 346 n n C2D C1D NAI sing 347 n n C2D H2D NAI sing 348 n n O2D HO2N NAI sing 349 n n C1D N1N NAI sing 350 n n C1D H1D NAI sing 351 n n N1N C2N NAI sing 352 n n N1N C6N NAI sing 353 n n C2N C3N NAI doub 354 n n C2N H2N NAI sing 355 n n C3N C7N NAI sing 356 n n C3N C4N NAI sing 357 n n C7N O7N NAI doub 358 n n C7N N7N NAI sing 359 n n N7N H71N NAI sing 360 n n N7N H72N NAI sing 361 n n C4N C5N NAI sing 362 n n C4N H4N NAI sing 363 n n C4N H42N NAI sing 364 n n C5N C6N NAI doub 365 n n C5N H5N NAI sing 366 n n C6N H6N NAI sing 367 n n # _atom_sites.entry_id 4LTN _atom_sites.fract_transf_matrix[1][1] 0.009883 _atom_sites.fract_transf_matrix[1][2] 0.005706 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 201 1 NAI NAD . C 3 FMN A 1 202 1 FMN FMN . D 4 SO4 A 1 203 1 SO4 SO4 . E 4 SO4 A 1 204 1 SO4 SO4 . F 5 HOH A 1 301 1 HOH HOH . F 5 HOH A 2 302 2 HOH HOH . F 5 HOH A 3 303 3 HOH HOH . F 5 HOH A 4 304 4 HOH HOH . F 5 HOH A 5 305 5 HOH HOH . F 5 HOH A 6 306 6 HOH HOH . F 5 HOH A 7 307 7 HOH HOH . F 5 HOH A 8 308 8 HOH HOH . F 5 HOH A 9 309 9 HOH HOH . F 5 HOH A 10 310 10 HOH HOH . F 5 HOH A 11 311 11 HOH HOH . F 5 HOH A 12 312 12 HOH HOH . F 5 HOH A 13 313 13 HOH HOH . F 5 HOH A 14 314 14 HOH HOH . F 5 HOH A 15 315 15 HOH HOH . F 5 HOH A 16 316 16 HOH HOH . F 5 HOH A 17 317 17 HOH HOH . F 5 HOH A 18 318 18 HOH HOH . F 5 HOH A 19 319 19 HOH HOH . F 5 HOH A 20 320 20 HOH HOH . F 5 HOH A 21 321 21 HOH HOH . F 5 HOH A 22 322 22 HOH HOH . F 5 HOH A 23 323 23 HOH HOH . F 5 HOH A 24 324 24 HOH HOH . F 5 HOH A 25 325 25 HOH HOH . F 5 HOH A 26 326 26 HOH HOH . F 5 HOH A 27 327 27 HOH HOH . F 5 HOH A 28 328 28 HOH HOH . F 5 HOH A 29 329 29 HOH HOH . F 5 HOH A 30 330 30 HOH HOH . F 5 HOH A 31 331 31 HOH HOH . F 5 HOH A 32 332 32 HOH HOH . F 5 HOH A 33 333 33 HOH HOH . F 5 HOH A 34 334 34 HOH HOH . F 5 HOH A 35 335 35 HOH HOH . F 5 HOH A 36 336 36 HOH HOH . F 5 HOH A 37 337 37 HOH HOH . F 5 HOH A 38 338 38 HOH HOH . F 5 HOH A 39 339 39 HOH HOH . F 5 HOH A 40 340 40 HOH HOH . F 5 HOH A 41 341 41 HOH HOH . F 5 HOH A 42 342 42 HOH HOH . F 5 HOH A 43 343 43 HOH HOH . F 5 HOH A 44 344 44 HOH HOH . F 5 HOH A 45 345 45 HOH HOH . F 5 HOH A 46 346 46 HOH HOH . F 5 HOH A 47 347 47 HOH HOH . F 5 HOH A 48 348 48 HOH HOH . F 5 HOH A 49 349 49 HOH HOH . F 5 HOH A 50 350 50 HOH HOH . F 5 HOH A 51 351 51 HOH HOH . F 5 HOH A 52 352 52 HOH HOH . F 5 HOH A 53 353 53 HOH HOH . F 5 HOH A 54 354 54 HOH HOH . F 5 HOH A 55 355 55 HOH HOH . F 5 HOH A 56 356 56 HOH HOH . F 5 HOH A 57 357 57 HOH HOH . F 5 HOH A 58 358 58 HOH HOH . F 5 HOH A 59 359 59 HOH HOH . F 5 HOH A 60 360 60 HOH HOH . F 5 HOH A 61 361 61 HOH HOH . F 5 HOH A 62 362 62 HOH HOH . F 5 HOH A 63 363 63 HOH HOH . F 5 HOH A 64 364 64 HOH HOH . F 5 HOH A 65 365 65 HOH HOH . F 5 HOH A 66 366 66 HOH HOH . F 5 HOH A 67 367 67 HOH HOH . F 5 HOH A 68 368 68 HOH HOH . F 5 HOH A 69 369 69 HOH HOH . F 5 HOH A 70 370 70 HOH HOH . F 5 HOH A 71 371 71 HOH HOH . F 5 HOH A 72 372 72 HOH HOH . F 5 HOH A 73 373 73 HOH HOH . F 5 HOH A 74 374 74 HOH HOH . F 5 HOH A 75 375 75 HOH HOH . F 5 HOH A 76 376 76 HOH HOH . F 5 HOH A 77 377 77 HOH HOH . F 5 HOH A 78 378 78 HOH HOH . F 5 HOH A 79 379 79 HOH HOH . F 5 HOH A 80 380 80 HOH HOH . F 5 HOH A 81 381 81 HOH HOH . F 5 HOH A 82 382 82 HOH HOH . F 5 HOH A 83 383 83 HOH HOH . F 5 HOH A 84 384 84 HOH HOH . F 5 HOH A 85 385 85 HOH HOH . F 5 HOH A 86 386 86 HOH HOH . F 5 HOH A 87 387 87 HOH HOH . F 5 HOH A 88 388 88 HOH HOH . F 5 HOH A 89 389 89 HOH HOH . F 5 HOH A 90 390 90 HOH HOH . F 5 HOH A 91 391 91 HOH HOH . F 5 HOH A 92 392 92 HOH HOH . F 5 HOH A 93 393 93 HOH HOH . F 5 HOH A 94 394 94 HOH HOH . F 5 HOH A 95 395 95 HOH HOH . F 5 HOH A 96 396 96 HOH HOH . F 5 HOH A 97 397 97 HOH HOH . F 5 HOH A 98 398 98 HOH HOH . F 5 HOH A 99 399 99 HOH HOH . F 5 HOH A 100 400 100 HOH HOH . F 5 HOH A 101 401 101 HOH HOH . F 5 HOH A 102 402 102 HOH HOH . F 5 HOH A 103 403 103 HOH HOH . F 5 HOH A 104 404 104 HOH HOH . F 5 HOH A 105 405 105 HOH HOH . F 5 HOH A 106 406 106 HOH HOH . F 5 HOH A 107 407 107 HOH HOH . F 5 HOH A 108 408 108 HOH HOH . F 5 HOH A 109 409 109 HOH HOH . F 5 HOH A 110 410 110 HOH HOH . F 5 HOH A 111 411 111 HOH HOH . F 5 HOH A 112 412 112 HOH HOH . F 5 HOH A 113 413 113 HOH HOH . F 5 HOH A 114 414 114 HOH HOH . F 5 HOH A 115 415 115 HOH HOH . F 5 HOH A 116 416 116 HOH HOH . F 5 HOH A 117 417 117 HOH HOH . F 5 HOH A 118 418 118 HOH HOH . F 5 HOH A 119 419 119 HOH HOH . F 5 HOH A 120 420 120 HOH HOH . F 5 HOH A 121 421 121 HOH HOH . F 5 HOH A 122 422 122 HOH HOH . F 5 HOH A 123 423 123 HOH HOH . F 5 HOH A 124 424 124 HOH HOH . F 5 HOH A 125 425 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAI . . . B 2 18.253 25.996 73.833 1 48.61 ? PA NAI 201 A 1 HETATM 2 O O1A NAI . . . B 2 17.062 26.84 73.518 1 39.42 ? O1A NAI 201 A 1 HETATM 3 O O2A NAI . . . B 2 18.97 26.393 75.075 1 48.81 ? O2A NAI 201 A 1 HETATM 4 O O5B NAI . . . B 2 19.344 26.026 72.721 1 46.94 ? O5B NAI 201 A 1 HETATM 5 C C5B NAI . . . B 2 18.985 26.303 71.382 1 44.03 ? C5B NAI 201 A 1 HETATM 6 C C4B NAI . . . B 2 20.15 26.145 70.506 1 44.98 ? C4B NAI 201 A 1 HETATM 7 O O4B NAI . . . B 2 21.126 27.149 70.733 1 43.39 ? O4B NAI 201 A 1 HETATM 8 C C3B NAI . . . B 2 20.808 24.848 70.705 1 47.19 ? C3B NAI 201 A 1 HETATM 9 O O3B NAI . . . B 2 21.112 24.316 69.478 1 49.87 ? O3B NAI 201 A 1 HETATM 10 C C2B NAI . . . B 2 22.051 25.142 71.427 1 45.87 ? C2B NAI 201 A 1 HETATM 11 O O2B NAI . . . B 2 23.09 24.345 70.963 1 47.89 ? O2B NAI 201 A 1 HETATM 12 C C1B NAI . . . B 2 22.349 26.537 71.107 1 41.73 ? C1B NAI 201 A 1 HETATM 13 N N9A NAI . . . B 2 22.867 27.182 72.19 1 37.06 ? N9A NAI 201 A 1 HETATM 14 C C8A NAI . . . B 2 22.452 27.182 73.418 1 36.09 ? C8A NAI 201 A 1 HETATM 15 N N7A NAI . . . B 2 23.256 27.953 74.154 1 35.7 ? N7A NAI 201 A 1 HETATM 16 C C5A NAI . . . B 2 24.22 28.467 73.358 1 33.39 ? C5A NAI 201 A 1 HETATM 17 C C6A NAI . . . B 2 25.32 29.321 73.548 1 32.27 ? C6A NAI 201 A 1 HETATM 18 N N6A NAI . . . B 2 25.597 29.846 74.82 1 31.95 ? N6A NAI 201 A 1 HETATM 19 N N1A NAI . . . B 2 26.062 29.634 72.501 1 31.21 ? N1A NAI 201 A 1 HETATM 20 C C2A NAI . . . B 2 25.776 29.119 71.335 1 32.27 ? C2A NAI 201 A 1 HETATM 21 N N3A NAI . . . B 2 24.773 28.308 71.086 1 35.35 ? N3A NAI 201 A 1 HETATM 22 C C4A NAI . . . B 2 23.963 27.961 72.078 1 34.07 ? C4A NAI 201 A 1 HETATM 23 O O3 NAI . . . B 2 17.704 24.55 73.965 1 56.99 ? O3 NAI 201 A 1 HETATM 24 P PN NAI . . . B 2 18.338 23.373 74.842 1 68.2 ? PN NAI 201 A 1 HETATM 25 O O1N NAI . . . B 2 19.787 23.676 74.979 1 60.64 ? O1N NAI 201 A 1 HETATM 26 O O2N NAI . . . B 2 18.031 22.094 74.077 1 65.79 ? O2N NAI 201 A 1 HETATM 27 O O5D NAI . . . B 2 17.638 23.484 76.254 1 61.2 ? O5D NAI 201 A 1 HETATM 28 C C5D NAI . . . B 2 17.732 22.562 77.362 1 61.9 ? C5D NAI 201 A 1 HETATM 29 C C4D NAI . . . B 2 18.637 23.21 78.42 1 62 ? C4D NAI 201 A 1 HETATM 30 O O4D NAI . . . B 2 18.036 23.723 79.605 1 60.35 ? O4D NAI 201 A 1 HETATM 31 C C3D NAI . . . B 2 19.567 22.266 78.91 1 64.3 ? C3D NAI 201 A 1 HETATM 32 O O3D NAI . . . B 2 20.454 21.974 77.834 1 67.93 ? O3D NAI 201 A 1 HETATM 33 C C2D NAI . . . B 2 20.204 23.021 79.992 1 63.21 ? C2D NAI 201 A 1 HETATM 34 O O2D NAI . . . B 2 21.237 23.791 79.468 1 64.63 ? O2D NAI 201 A 1 HETATM 35 C C1D NAI . . . B 2 19.147 23.951 80.477 1 60.05 ? C1D NAI 201 A 1 HETATM 36 N N1N NAI . . . B 2 18.811 23.666 81.809 1 60.52 ? N1N NAI 201 A 1 HETATM 37 C C2N NAI . . . B 2 19.075 24.506 82.829 1 58.41 ? C2N NAI 201 A 1 HETATM 38 C C3N NAI . . . B 2 18.688 24.195 84.147 1 58.5 ? C3N NAI 201 A 1 HETATM 39 C C7N NAI . . . B 2 18.904 25.106 85.382 1 55.29 ? C7N NAI 201 A 1 HETATM 40 O O7N NAI . . . B 2 17.904 25.671 85.707 1 52.99 ? O7N NAI 201 A 1 HETATM 41 N N7N NAI . . . B 2 20.108 25.283 86.135 1 53.21 ? N7N NAI 201 A 1 HETATM 42 C C4N NAI . . . B 2 18.006 22.994 84.374 1 59.91 ? C4N NAI 201 A 1 HETATM 43 C C5N NAI . . . B 2 17.761 22.148 83.298 1 62.14 ? C5N NAI 201 A 1 HETATM 44 C C6N NAI . . . B 2 18.179 22.541 82.032 1 63.76 ? C6N NAI 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #