data_4LTN # _model_server_result.job_id ItOQDyOyx3HYPKb5VtHLEA _model_server_result.datetime_utc '2024-11-04 23:32:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ltn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4LTN # _exptl.entry_id 4LTN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LTN _cell.length_a 101.18 _cell.length_b 101.18 _cell.length_c 129.71 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LTN _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 50.59 87.62445 0 3 'crystal symmetry operation' 7_556 y,x,-z+4/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 172.946667 4 'crystal symmetry operation' 10_666 -y+1,-x+1,-z+4/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 50.59 87.62445 172.946667 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 130 A SER 130 1_555 A N MSE 131 A MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 131 A MSE 131 1_555 A N GLY 132 A GLY 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PHE 141 A PHE 141 1_555 A N MSE 142 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 142 A MSE 142 1_555 A N VAL 143 A VAL 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4LTN _atom_sites.fract_transf_matrix[1][1] 0.009883 _atom_sites.fract_transf_matrix[1][2] 0.005706 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011412 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAI A 1 201 1 NAI NAD . C 3 FMN A 1 202 1 FMN FMN . D 4 SO4 A 1 203 1 SO4 SO4 . E 4 SO4 A 1 204 1 SO4 SO4 . F 5 HOH A 1 301 1 HOH HOH . F 5 HOH A 2 302 2 HOH HOH . F 5 HOH A 3 303 3 HOH HOH . F 5 HOH A 4 304 4 HOH HOH . F 5 HOH A 5 305 5 HOH HOH . F 5 HOH A 6 306 6 HOH HOH . F 5 HOH A 7 307 7 HOH HOH . F 5 HOH A 8 308 8 HOH HOH . F 5 HOH A 9 309 9 HOH HOH . F 5 HOH A 10 310 10 HOH HOH . F 5 HOH A 11 311 11 HOH HOH . F 5 HOH A 12 312 12 HOH HOH . F 5 HOH A 13 313 13 HOH HOH . F 5 HOH A 14 314 14 HOH HOH . F 5 HOH A 15 315 15 HOH HOH . F 5 HOH A 16 316 16 HOH HOH . F 5 HOH A 17 317 17 HOH HOH . F 5 HOH A 18 318 18 HOH HOH . F 5 HOH A 19 319 19 HOH HOH . F 5 HOH A 20 320 20 HOH HOH . F 5 HOH A 21 321 21 HOH HOH . F 5 HOH A 22 322 22 HOH HOH . F 5 HOH A 23 323 23 HOH HOH . F 5 HOH A 24 324 24 HOH HOH . F 5 HOH A 25 325 25 HOH HOH . F 5 HOH A 26 326 26 HOH HOH . F 5 HOH A 27 327 27 HOH HOH . F 5 HOH A 28 328 28 HOH HOH . F 5 HOH A 29 329 29 HOH HOH . F 5 HOH A 30 330 30 HOH HOH . F 5 HOH A 31 331 31 HOH HOH . F 5 HOH A 32 332 32 HOH HOH . F 5 HOH A 33 333 33 HOH HOH . F 5 HOH A 34 334 34 HOH HOH . F 5 HOH A 35 335 35 HOH HOH . F 5 HOH A 36 336 36 HOH HOH . F 5 HOH A 37 337 37 HOH HOH . F 5 HOH A 38 338 38 HOH HOH . F 5 HOH A 39 339 39 HOH HOH . F 5 HOH A 40 340 40 HOH HOH . F 5 HOH A 41 341 41 HOH HOH . F 5 HOH A 42 342 42 HOH HOH . F 5 HOH A 43 343 43 HOH HOH . F 5 HOH A 44 344 44 HOH HOH . F 5 HOH A 45 345 45 HOH HOH . F 5 HOH A 46 346 46 HOH HOH . F 5 HOH A 47 347 47 HOH HOH . F 5 HOH A 48 348 48 HOH HOH . F 5 HOH A 49 349 49 HOH HOH . F 5 HOH A 50 350 50 HOH HOH . F 5 HOH A 51 351 51 HOH HOH . F 5 HOH A 52 352 52 HOH HOH . F 5 HOH A 53 353 53 HOH HOH . F 5 HOH A 54 354 54 HOH HOH . F 5 HOH A 55 355 55 HOH HOH . F 5 HOH A 56 356 56 HOH HOH . F 5 HOH A 57 357 57 HOH HOH . F 5 HOH A 58 358 58 HOH HOH . F 5 HOH A 59 359 59 HOH HOH . F 5 HOH A 60 360 60 HOH HOH . F 5 HOH A 61 361 61 HOH HOH . F 5 HOH A 62 362 62 HOH HOH . F 5 HOH A 63 363 63 HOH HOH . F 5 HOH A 64 364 64 HOH HOH . F 5 HOH A 65 365 65 HOH HOH . F 5 HOH A 66 366 66 HOH HOH . F 5 HOH A 67 367 67 HOH HOH . F 5 HOH A 68 368 68 HOH HOH . F 5 HOH A 69 369 69 HOH HOH . F 5 HOH A 70 370 70 HOH HOH . F 5 HOH A 71 371 71 HOH HOH . F 5 HOH A 72 372 72 HOH HOH . F 5 HOH A 73 373 73 HOH HOH . F 5 HOH A 74 374 74 HOH HOH . F 5 HOH A 75 375 75 HOH HOH . F 5 HOH A 76 376 76 HOH HOH . F 5 HOH A 77 377 77 HOH HOH . F 5 HOH A 78 378 78 HOH HOH . F 5 HOH A 79 379 79 HOH HOH . F 5 HOH A 80 380 80 HOH HOH . F 5 HOH A 81 381 81 HOH HOH . F 5 HOH A 82 382 82 HOH HOH . F 5 HOH A 83 383 83 HOH HOH . F 5 HOH A 84 384 84 HOH HOH . F 5 HOH A 85 385 85 HOH HOH . F 5 HOH A 86 386 86 HOH HOH . F 5 HOH A 87 387 87 HOH HOH . F 5 HOH A 88 388 88 HOH HOH . F 5 HOH A 89 389 89 HOH HOH . F 5 HOH A 90 390 90 HOH HOH . F 5 HOH A 91 391 91 HOH HOH . F 5 HOH A 92 392 92 HOH HOH . F 5 HOH A 93 393 93 HOH HOH . F 5 HOH A 94 394 94 HOH HOH . F 5 HOH A 95 395 95 HOH HOH . F 5 HOH A 96 396 96 HOH HOH . F 5 HOH A 97 397 97 HOH HOH . F 5 HOH A 98 398 98 HOH HOH . F 5 HOH A 99 399 99 HOH HOH . F 5 HOH A 100 400 100 HOH HOH . F 5 HOH A 101 401 101 HOH HOH . F 5 HOH A 102 402 102 HOH HOH . F 5 HOH A 103 403 103 HOH HOH . F 5 HOH A 104 404 104 HOH HOH . F 5 HOH A 105 405 105 HOH HOH . F 5 HOH A 106 406 106 HOH HOH . F 5 HOH A 107 407 107 HOH HOH . F 5 HOH A 108 408 108 HOH HOH . F 5 HOH A 109 409 109 HOH HOH . F 5 HOH A 110 410 110 HOH HOH . F 5 HOH A 111 411 111 HOH HOH . F 5 HOH A 112 412 112 HOH HOH . F 5 HOH A 113 413 113 HOH HOH . F 5 HOH A 114 414 114 HOH HOH . F 5 HOH A 115 415 115 HOH HOH . F 5 HOH A 116 416 116 HOH HOH . F 5 HOH A 117 417 117 HOH HOH . F 5 HOH A 118 418 118 HOH HOH . F 5 HOH A 119 419 119 HOH HOH . F 5 HOH A 120 420 120 HOH HOH . F 5 HOH A 121 421 121 HOH HOH . F 5 HOH A 122 422 122 HOH HOH . F 5 HOH A 123 423 123 HOH HOH . F 5 HOH A 124 424 124 HOH HOH . F 5 HOH A 125 425 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 19.804 30.525 76.299 1 27.57 ? N1 FMN 202 A 1 HETATM 2 C C2 FMN . . . C 3 20.09 30.851 77.609 1 29.28 ? C2 FMN 202 A 1 HETATM 3 O O2 FMN . . . C 3 19.269 30.61 78.49 1 28.88 ? O2 FMN 202 A 1 HETATM 4 N N3 FMN . . . C 3 21.303 31.435 77.926 1 28.13 ? N3 FMN 202 A 1 HETATM 5 C C4 FMN . . . C 3 22.243 31.704 76.952 1 27.88 ? C4 FMN 202 A 1 HETATM 6 O O4 FMN . . . C 3 23.316 32.234 77.24 1 27.46 ? O4 FMN 202 A 1 HETATM 7 C C4A FMN . . . C 3 21.958 31.38 75.641 1 27.34 ? C4A FMN 202 A 1 HETATM 8 N N5 FMN . . . C 3 22.879 31.654 74.652 1 28.09 ? N5 FMN 202 A 1 HETATM 9 C C5A FMN . . . C 3 22.581 31.328 73.339 1 27.83 ? C5A FMN 202 A 1 HETATM 10 C C6 FMN . . . C 3 23.51 31.598 72.333 1 28.96 ? C6 FMN 202 A 1 HETATM 11 C C7 FMN . . . C 3 23.215 31.274 71.014 1 28.95 ? C7 FMN 202 A 1 HETATM 12 C C7M FMN . . . C 3 24.212 31.564 69.919 1 29.7 ? C7M FMN 202 A 1 HETATM 13 C C8 FMN . . . C 3 21.997 30.677 70.699 1 29.92 ? C8 FMN 202 A 1 HETATM 14 C C8M FMN . . . C 3 21.691 30.334 69.271 1 30.62 ? C8M FMN 202 A 1 HETATM 15 C C9 FMN . . . C 3 21.06 30.409 71.704 1 30.11 ? C9 FMN 202 A 1 HETATM 16 C C9A FMN . . . C 3 21.354 30.739 73.024 1 28.79 ? C9A FMN 202 A 1 HETATM 17 N N10 FMN . . . C 3 20.435 30.476 74.026 1 28.75 ? N10 FMN 202 A 1 HETATM 18 C C10 FMN . . . C 3 20.738 30.791 75.325 1 27.83 ? C10 FMN 202 A 1 HETATM 19 C C1' FMN . . . C 3 19.11 29.847 73.736 1 27.6 ? C1' FMN 202 A 1 HETATM 20 C C2' FMN . . . C 3 18.127 30.921 73.254 1 28.58 ? C2' FMN 202 A 1 HETATM 21 O O2' FMN . . . C 3 18.058 31.989 74.172 1 25.84 ? O2' FMN 202 A 1 HETATM 22 C C3' FMN . . . C 3 16.723 30.337 73.099 1 30.2 ? C3' FMN 202 A 1 HETATM 23 O O3' FMN . . . C 3 16.766 29.293 72.154 1 29.07 ? O3' FMN 202 A 1 HETATM 24 C C4' FMN . . . C 3 15.718 31.405 72.664 1 27.77 ? C4' FMN 202 A 1 HETATM 25 O O4' FMN . . . C 3 14.407 31.012 72.998 1 28.01 ? O4' FMN 202 A 1 HETATM 26 C C5' FMN . . . C 3 15.797 31.689 71.167 1 27.06 ? C5' FMN 202 A 1 HETATM 27 O O5' FMN . . . C 3 14.815 32.647 70.834 1 25.42 ? O5' FMN 202 A 1 HETATM 28 P P FMN . . . C 3 14.402 32.955 69.3 1 26.34 ? P FMN 202 A 1 HETATM 29 O O1P FMN . . . C 3 13.536 31.822 68.813 1 26.65 ? O1P FMN 202 A 1 HETATM 30 O O2P FMN . . . C 3 15.64 33.115 68.462 1 25.77 ? O2P FMN 202 A 1 HETATM 31 O O3P FMN . . . C 3 13.593 34.229 69.242 1 23.22 ? O3P FMN 202 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #