data_4LUD
#
_model_server_result.job_id            etXZl_QsA-Qu0mR870Mqfw 
_model_server_result.datetime_utc      '2024-12-02 00:23:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lud 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":604}' 
#
_entry.id    4LUD 
#
_exptl.entry_id    4LUD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.77 
_cell.angle_gamma         90 
_cell.entry_id            4LUD 
_cell.length_a            48.3 
_cell.length_b            73.4 
_cell.length_c            180.29 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LUD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 K N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLN 449 A GLN 526 1_555 A N PTR 450 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C PTR 450 A PTR 527 1_555 A N GLU 451 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C GLN 449 B GLN 526 1_555 B N PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 B C PTR 450 B PTR 527 1_555 B N GLU 451 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OE2 GLU 413 A GLU 490 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc2 A OE1 GLU 413 A GLU 490 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.158 ? 
metalc ? metalc3 A O GLU 447 A GLU 524 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc4 A O PTR 450 A PTR 527 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc5 A OE2 GLU 452 A GLU 529 1_555 D CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc6 C CA CA . A CA 601 1_555 B O GLU 447 B GLU 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? 
metalc ? metalc7 C CA CA . A CA 601 1_555 B O PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc8 D CA CA . A CA 602 1_555 M O HOH . A HOH 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.005 ? 
metalc ? metalc9 D CA CA . A CA 602 1_555 B OE2 GLU 413 B GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? 
metalc ? metalc10 D CA CA . A CA 602 1_555 B OE1 GLU 413 B GLU 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.155 ? 
metalc ? metalc11 B OD1 ASN 314 B ASN 391 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc12 B OD2 ASP 327 B ASP 404 1_555 I CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc13 I CA CA . B CA 602 1_555 N O HOH . B HOH 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? 
metalc ? metalc14 I CA CA . B CA 602 1_555 N O HOH . B HOH 749 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.061 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4LUD 
_atom_sites.fract_transf_matrix[1][1]    0.020704 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002458 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013624 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005586 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 601 627 CA CA . 
D 2 CA A 1 602 628 CA CA . 
E 3 SK8 A 1 603 629 SK8 SK8 . 
F 4 GOL A 1 604 630 GOL GOL . 
G 5 CL A 1 605 631 CL CL . 
H 3 SK8 B 1 601 627 SK8 SK8 . 
I 2 CA B 1 602 628 CA CA . 
J 5 CL B 1 603 629 CL CL . 
K 4 GOL B 1 604 630 GOL GOL . 
L 4 GOL B 1 605 631 GOL GOL . 
M 6 HOH A 1 701 727 HOH HOH . 
M 6 HOH A 2 702 728 HOH HOH . 
M 6 HOH A 3 703 729 HOH HOH . 
M 6 HOH A 4 704 730 HOH HOH . 
M 6 HOH A 5 705 731 HOH HOH . 
M 6 HOH A 6 706 732 HOH HOH . 
M 6 HOH A 7 707 733 HOH HOH . 
M 6 HOH A 8 708 734 HOH HOH . 
M 6 HOH A 9 709 735 HOH HOH . 
M 6 HOH A 10 710 736 HOH HOH . 
M 6 HOH A 11 711 737 HOH HOH . 
M 6 HOH A 12 712 738 HOH HOH . 
M 6 HOH A 13 713 739 HOH HOH . 
M 6 HOH A 14 714 740 HOH HOH . 
M 6 HOH A 15 715 741 HOH HOH . 
M 6 HOH A 16 716 742 HOH HOH . 
M 6 HOH A 17 717 743 HOH HOH . 
M 6 HOH A 18 718 744 HOH HOH . 
M 6 HOH A 19 719 745 HOH HOH . 
M 6 HOH A 20 720 746 HOH HOH . 
M 6 HOH A 21 721 747 HOH HOH . 
M 6 HOH A 22 722 748 HOH HOH . 
M 6 HOH A 23 723 749 HOH HOH . 
M 6 HOH A 24 724 750 HOH HOH . 
M 6 HOH A 25 725 751 HOH HOH . 
M 6 HOH A 26 726 752 HOH HOH . 
N 6 HOH B 1 701 727 HOH HOH . 
N 6 HOH B 2 702 728 HOH HOH . 
N 6 HOH B 3 703 729 HOH HOH . 
N 6 HOH B 4 704 730 HOH HOH . 
N 6 HOH B 5 705 731 HOH HOH . 
N 6 HOH B 6 706 732 HOH HOH . 
N 6 HOH B 7 707 733 HOH HOH . 
N 6 HOH B 8 708 734 HOH HOH . 
N 6 HOH B 9 709 735 HOH HOH . 
N 6 HOH B 10 710 736 HOH HOH . 
N 6 HOH B 11 711 737 HOH HOH . 
N 6 HOH B 12 712 738 HOH HOH . 
N 6 HOH B 13 713 739 HOH HOH . 
N 6 HOH B 14 714 740 HOH HOH . 
N 6 HOH B 15 715 741 HOH HOH . 
N 6 HOH B 16 716 742 HOH HOH . 
N 6 HOH B 17 717 743 HOH HOH . 
N 6 HOH B 18 718 744 HOH HOH . 
N 6 HOH B 19 719 745 HOH HOH . 
N 6 HOH B 20 720 746 HOH HOH . 
N 6 HOH B 21 721 747 HOH HOH . 
N 6 HOH B 22 722 748 HOH HOH . 
N 6 HOH B 23 723 749 HOH HOH . 
N 6 HOH B 24 724 750 HOH HOH . 
N 6 HOH B 25 725 751 HOH HOH . 
N 6 HOH B 26 726 752 HOH HOH . 
N 6 HOH B 27 727 753 HOH HOH . 
N 6 HOH B 28 728 754 HOH HOH . 
N 6 HOH B 29 729 755 HOH HOH . 
N 6 HOH B 30 730 756 HOH HOH . 
N 6 HOH B 31 731 757 HOH HOH . 
N 6 HOH B 32 732 758 HOH HOH . 
N 6 HOH B 33 733 759 HOH HOH . 
N 6 HOH B 34 734 760 HOH HOH . 
N 6 HOH B 35 735 761 HOH HOH . 
N 6 HOH B 36 736 762 HOH HOH . 
N 6 HOH B 37 737 763 HOH HOH . 
N 6 HOH B 38 738 764 HOH HOH . 
N 6 HOH B 39 739 765 HOH HOH . 
N 6 HOH B 40 740 766 HOH HOH . 
N 6 HOH B 41 741 767 HOH HOH . 
N 6 HOH B 42 742 768 HOH HOH . 
N 6 HOH B 43 743 769 HOH HOH . 
N 6 HOH B 44 744 770 HOH HOH . 
N 6 HOH B 45 745 771 HOH HOH . 
N 6 HOH B 46 746 772 HOH HOH . 
N 6 HOH B 47 747 773 HOH HOH . 
N 6 HOH B 48 748 774 HOH HOH . 
N 6 HOH B 49 749 775 HOH HOH . 
N 6 HOH B 50 750 776 HOH HOH . 
N 6 HOH B 51 751 777 HOH HOH . 
N 6 HOH B 52 752 778 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 4 14.91 17.787 19.981 1 90.89 ? C1 GOL 604 B 1 
HETATM 2 O O1 GOL . . . K 4 15.092 17.839 21.378 1 99.86 ? O1 GOL 604 B 1 
HETATM 3 C C2 GOL . . . K 4 16.229 17.417 19.312 1 100.91 ? C2 GOL 604 B 1 
HETATM 4 O O2 GOL . . . K 4 17.107 16.878 20.273 1 106.39 ? O2 GOL 604 B 1 
HETATM 5 C C3 GOL . . . K 4 16.852 18.665 18.697 1 110.59 ? C3 GOL 604 B 1 
HETATM 6 O O3 GOL . . . K 4 18.041 18.314 18.024 1 120.41 ? O3 GOL 604 B 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#