data_4LUE # _model_server_result.job_id xRan1rMVml8yDp5vTsnhGg _model_server_result.datetime_utc '2024-12-01 10:55:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lue # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":606}' # _entry.id 4LUE # _exptl.entry_id 4LUE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LUE _cell.length_a 73.4 _cell.length_b 93.53 _cell.length_c 181.49 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LUE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,N 1 1 B,H,I,J,K,L,M,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 I N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 449 A GLN 526 1_555 A N PTR 450 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C PTR 450 A PTR 527 1_555 A N GLU 451 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C GLN 449 B GLN 526 1_555 B N PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C PTR 450 B PTR 527 1_555 B N GLU 451 B GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A OE2 GLU 413 A GLU 490 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc2 A OE1 GLU 413 A GLU 490 1_555 C CA CA . A CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc3 A O GLU 447 A GLU 524 1_555 H CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc4 A O PTR 450 A PTR 527 1_555 H CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc5 C CA CA . A CA 601 1_555 B O GLU 447 B GLU 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc6 C CA CA . A CA 601 1_555 B O PTR 450 B PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc7 B OE2 GLU 413 B GLU 490 1_555 H CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc8 B OE1 GLU 413 B GLU 490 1_555 H CA CA . B CA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4LUE _atom_sites.fract_transf_matrix[1][1] 0.013624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010692 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 601 1 CA CA . D 3 VSE A 1 602 1 VSE LIG . E 4 CL A 1 603 1 CL CL . F 5 GOL A 1 604 1 GOL GOL . G 5 GOL A 1 605 1 GOL GOL . H 2 CA B 1 601 1 CA CA . I 5 GOL B 1 602 1 GOL GOL . J 3 VSE B 1 603 1 VSE LIG . K 4 CL B 1 604 1 CL CL . L 6 IMD B 1 605 1 IMD IMD . M 5 GOL B 1 606 1 GOL GOL . N 7 HOH A 1 701 1 HOH HOH . N 7 HOH A 2 702 4 HOH HOH . N 7 HOH A 3 703 5 HOH HOH . N 7 HOH A 4 704 10 HOH HOH . N 7 HOH A 5 705 11 HOH HOH . N 7 HOH A 6 706 13 HOH HOH . N 7 HOH A 7 707 24 HOH HOH . N 7 HOH A 8 708 25 HOH HOH . N 7 HOH A 9 709 26 HOH HOH . O 7 HOH B 1 701 14 HOH HOH . O 7 HOH B 2 702 16 HOH HOH . O 7 HOH B 3 703 19 HOH HOH . O 7 HOH B 4 704 20 HOH HOH . O 7 HOH B 5 705 21 HOH HOH . O 7 HOH B 6 706 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 5 30.959 -7.861 -84.945 0.82 69.75 ? C1 GOL 606 B 1 HETATM 2 O O1 GOL . . . M 5 29.926 -7.681 -85.887 0.82 76.07 ? O1 GOL 606 B 1 HETATM 3 C C2 GOL . . . M 5 30.456 -7.486 -83.556 0.82 64.52 ? C2 GOL 606 B 1 HETATM 4 O O2 GOL . . . M 5 29.047 -7.515 -83.539 0.82 84.82 ? O2 GOL 606 B 1 HETATM 5 C C3 GOL . . . M 5 30.944 -6.088 -83.196 0.82 47.9 ? C3 GOL 606 B 1 HETATM 6 O O3 GOL . . . M 5 29.883 -5.167 -83.306 0.82 58.23 ? O3 GOL 606 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #