data_4LUG # _model_server_result.job_id BDZJEGbDP9Yteh74zKaEUA _model_server_result.datetime_utc '2025-09-06 22:59:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4LUG # _exptl.entry_id 4LUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LUG _cell.length_a 82.02 _cell.length_b 82.02 _cell.length_c 175.08 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1,2,3 B,D,F 2 1,4,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 82.02 0 0 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 41.01 71.031404 0 4 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 5 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 66 A ASP 98 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc2 A OD2 ASP 71 A ASP 103 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc3 A OD1 ASP 71 A ASP 103 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc4 A OD1 ASP 103 A ASP 135 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.769 ? metalc ? metalc5 C NA NA . A NA 301 1_555 E O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 C NA NA . A NA 301 1_555 E O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 C NA NA . A NA 301 1_555 E O HOH . A HOH 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc8 B OD2 ASP 66 B ASP 98 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc9 B OD2 ASP 71 B ASP 103 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc10 B OD1 ASP 71 B ASP 103 1_555 D NA NA . B NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc11 D NA NA . B NA 301 1_555 F O HOH . B HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc12 D NA NA . B NA 301 1_555 F O HOH . B HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc13 D NA NA . B NA 301 1_555 F O HOH . B HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc14 D NA NA . B NA 301 1_555 F O HOH . B HOH 498 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LUG _atom_sites.fract_transf_matrix[1][1] 0.012192 _atom_sites.fract_transf_matrix[1][2] 0.007039 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005712 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 301 1 NA NA . D 2 NA B 1 301 1 NA NA . E 3 HOH A 1 401 1 HOH HOH . E 3 HOH A 2 402 7 HOH HOH . E 3 HOH A 3 403 8 HOH HOH . E 3 HOH A 4 404 10 HOH HOH . E 3 HOH A 5 405 11 HOH HOH . E 3 HOH A 6 406 13 HOH HOH . E 3 HOH A 7 407 15 HOH HOH . E 3 HOH A 8 408 16 HOH HOH . E 3 HOH A 9 409 18 HOH HOH . E 3 HOH A 10 410 20 HOH HOH . E 3 HOH A 11 411 22 HOH HOH . E 3 HOH A 12 412 23 HOH HOH . E 3 HOH A 13 413 27 HOH HOH . E 3 HOH A 14 414 32 HOH HOH . E 3 HOH A 15 415 36 HOH HOH . E 3 HOH A 16 416 37 HOH HOH . E 3 HOH A 17 417 39 HOH HOH . E 3 HOH A 18 418 40 HOH HOH . E 3 HOH A 19 419 41 HOH HOH . E 3 HOH A 20 420 47 HOH HOH . E 3 HOH A 21 421 49 HOH HOH . E 3 HOH A 22 422 52 HOH HOH . E 3 HOH A 23 423 53 HOH HOH . E 3 HOH A 24 424 56 HOH HOH . E 3 HOH A 25 425 63 HOH HOH . E 3 HOH A 26 426 66 HOH HOH . E 3 HOH A 27 427 67 HOH HOH . E 3 HOH A 28 428 69 HOH HOH . E 3 HOH A 29 429 75 HOH HOH . E 3 HOH A 30 430 77 HOH HOH . E 3 HOH A 31 431 81 HOH HOH . E 3 HOH A 32 432 82 HOH HOH . E 3 HOH A 33 433 86 HOH HOH . E 3 HOH A 34 434 87 HOH HOH . E 3 HOH A 35 435 88 HOH HOH . E 3 HOH A 36 436 93 HOH HOH . E 3 HOH A 37 437 94 HOH HOH . E 3 HOH A 38 438 95 HOH HOH . E 3 HOH A 39 439 96 HOH HOH . E 3 HOH A 40 440 97 HOH HOH . E 3 HOH A 41 441 99 HOH HOH . E 3 HOH A 42 442 100 HOH HOH . E 3 HOH A 43 443 102 HOH HOH . E 3 HOH A 44 444 107 HOH HOH . E 3 HOH A 45 445 117 HOH HOH . E 3 HOH A 46 446 127 HOH HOH . E 3 HOH A 47 447 130 HOH HOH . E 3 HOH A 48 448 132 HOH HOH . E 3 HOH A 49 449 135 HOH HOH . E 3 HOH A 50 450 141 HOH HOH . E 3 HOH A 51 451 142 HOH HOH . E 3 HOH A 52 452 147 HOH HOH . E 3 HOH A 53 453 148 HOH HOH . E 3 HOH A 54 454 160 HOH HOH . E 3 HOH A 55 455 174 HOH HOH . E 3 HOH A 56 456 186 HOH HOH . E 3 HOH A 57 457 194 HOH HOH . E 3 HOH A 58 458 213 HOH HOH . E 3 HOH A 59 459 214 HOH HOH . E 3 HOH A 60 460 226 HOH HOH . E 3 HOH A 61 461 228 HOH HOH . E 3 HOH A 62 462 229 HOH HOH . E 3 HOH A 63 463 232 HOH HOH . E 3 HOH A 64 464 237 HOH HOH . E 3 HOH A 65 465 242 HOH HOH . E 3 HOH A 66 466 244 HOH HOH . E 3 HOH A 67 467 246 HOH HOH . E 3 HOH A 68 468 256 HOH HOH . E 3 HOH A 69 469 261 HOH HOH . E 3 HOH A 70 470 265 HOH HOH . F 3 HOH B 1 401 2 HOH HOH . F 3 HOH B 2 402 3 HOH HOH . F 3 HOH B 3 403 4 HOH HOH . F 3 HOH B 4 404 6 HOH HOH . F 3 HOH B 5 405 9 HOH HOH . F 3 HOH B 6 406 12 HOH HOH . F 3 HOH B 7 407 14 HOH HOH . F 3 HOH B 8 408 17 HOH HOH . F 3 HOH B 9 409 19 HOH HOH . F 3 HOH B 10 410 24 HOH HOH . F 3 HOH B 11 411 25 HOH HOH . F 3 HOH B 12 412 26 HOH HOH . F 3 HOH B 13 413 29 HOH HOH . F 3 HOH B 14 414 30 HOH HOH . F 3 HOH B 15 415 31 HOH HOH . F 3 HOH B 16 416 33 HOH HOH . F 3 HOH B 17 417 34 HOH HOH . F 3 HOH B 18 418 35 HOH HOH . F 3 HOH B 19 419 42 HOH HOH . F 3 HOH B 20 420 43 HOH HOH . F 3 HOH B 21 421 44 HOH HOH . F 3 HOH B 22 422 46 HOH HOH . F 3 HOH B 23 423 48 HOH HOH . F 3 HOH B 24 424 50 HOH HOH . F 3 HOH B 25 425 51 HOH HOH . F 3 HOH B 26 426 54 HOH HOH . F 3 HOH B 27 427 55 HOH HOH . F 3 HOH B 28 428 57 HOH HOH . F 3 HOH B 29 429 58 HOH HOH . F 3 HOH B 30 430 59 HOH HOH . F 3 HOH B 31 431 60 HOH HOH . F 3 HOH B 32 432 62 HOH HOH . F 3 HOH B 33 433 64 HOH HOH . F 3 HOH B 34 434 65 HOH HOH . F 3 HOH B 35 435 68 HOH HOH . F 3 HOH B 36 436 70 HOH HOH . F 3 HOH B 37 437 71 HOH HOH . F 3 HOH B 38 438 72 HOH HOH . F 3 HOH B 39 439 73 HOH HOH . F 3 HOH B 40 440 74 HOH HOH . F 3 HOH B 41 441 76 HOH HOH . F 3 HOH B 42 442 78 HOH HOH . F 3 HOH B 43 443 79 HOH HOH . F 3 HOH B 44 444 80 HOH HOH . F 3 HOH B 45 445 83 HOH HOH . F 3 HOH B 46 446 85 HOH HOH . F 3 HOH B 47 447 90 HOH HOH . F 3 HOH B 48 448 91 HOH HOH . F 3 HOH B 49 449 92 HOH HOH . F 3 HOH B 50 450 101 HOH HOH . F 3 HOH B 51 451 104 HOH HOH . F 3 HOH B 52 452 108 HOH HOH . F 3 HOH B 53 453 109 HOH HOH . F 3 HOH B 54 454 110 HOH HOH . F 3 HOH B 55 455 111 HOH HOH . F 3 HOH B 56 456 112 HOH HOH . F 3 HOH B 57 457 114 HOH HOH . F 3 HOH B 58 458 115 HOH HOH . F 3 HOH B 59 459 118 HOH HOH . F 3 HOH B 60 460 122 HOH HOH . F 3 HOH B 61 461 124 HOH HOH . F 3 HOH B 62 462 125 HOH HOH . F 3 HOH B 63 463 126 HOH HOH . F 3 HOH B 64 464 129 HOH HOH . F 3 HOH B 65 465 131 HOH HOH . F 3 HOH B 66 466 133 HOH HOH . F 3 HOH B 67 467 136 HOH HOH . F 3 HOH B 68 468 139 HOH HOH . F 3 HOH B 69 469 140 HOH HOH . F 3 HOH B 70 470 143 HOH HOH . F 3 HOH B 71 471 145 HOH HOH . F 3 HOH B 72 472 146 HOH HOH . F 3 HOH B 73 473 149 HOH HOH . F 3 HOH B 74 474 152 HOH HOH . F 3 HOH B 75 475 155 HOH HOH . F 3 HOH B 76 476 159 HOH HOH . F 3 HOH B 77 477 161 HOH HOH . F 3 HOH B 78 478 165 HOH HOH . F 3 HOH B 79 479 166 HOH HOH . F 3 HOH B 80 480 179 HOH HOH . F 3 HOH B 81 481 181 HOH HOH . F 3 HOH B 82 482 187 HOH HOH . F 3 HOH B 83 483 189 HOH HOH . F 3 HOH B 84 484 192 HOH HOH . F 3 HOH B 85 485 193 HOH HOH . F 3 HOH B 86 486 197 HOH HOH . F 3 HOH B 87 487 211 HOH HOH . F 3 HOH B 88 488 212 HOH HOH . F 3 HOH B 89 489 215 HOH HOH . F 3 HOH B 90 490 216 HOH HOH . F 3 HOH B 91 491 218 HOH HOH . F 3 HOH B 92 492 219 HOH HOH . F 3 HOH B 93 493 230 HOH HOH . F 3 HOH B 94 494 236 HOH HOH . F 3 HOH B 95 495 241 HOH HOH . F 3 HOH B 96 496 243 HOH HOH . F 3 HOH B 97 497 245 HOH HOH . F 3 HOH B 98 498 247 HOH HOH . F 3 HOH B 99 499 260 HOH HOH . F 3 HOH B 100 500 262 HOH HOH . F 3 HOH B 101 501 263 HOH HOH . F 3 HOH B 102 502 266 HOH HOH . F 3 HOH B 103 503 267 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.53 _atom_site.Cartn_y 30.267 _atom_site.Cartn_z 85.412 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #