data_4LUM # _model_server_result.job_id hmvoxaCjgeSI0LkLlJGhlA _model_server_result.datetime_utc '2025-02-17 15:56:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 4LUM # _exptl.entry_id 4LUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 87.81 _cell.angle_beta 89.86 _cell.angle_gamma 75.47 _cell.entry_id 4LUM _cell.length_a 44.94 _cell.length_b 45.01 _cell.length_c 48.69 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A NE2 HIS 91 A HIS 90 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 A OE1 GLU 98 A GLU 97 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 A NE2 HIS 137 A HIS 136 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 C MN MN . A MN 201 1_555 D O1 F6R . A F6R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 C MN MN . A MN 201 1_555 D O2 F6R . A F6R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc7 B NE2 HIS 89 B HIS 88 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 B NE2 HIS 91 B HIS 90 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc9 B OE1 GLU 98 B GLU 97 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc10 B NE2 HIS 137 B HIS 136 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc11 E MN MN . B MN 201 1_555 F O1 F6R . B F6R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc12 E MN MN . B MN 201 1_555 F O2 F6R . B F6R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LUM _atom_sites.fract_transf_matrix[1][1] 0.022252 _atom_sites.fract_transf_matrix[1][2] -0.005767 _atom_sites.fract_transf_matrix[1][3] 0.00017 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022951 _atom_sites.fract_transf_matrix[2][3] -0.000892 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 2 MN MN . D 3 F6R A 1 202 1 F6R FPX . E 2 MN B 1 201 1 MN MN . F 3 F6R B 1 202 1 F6R FPX . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 3 HOH HOH . G 4 HOH A 3 303 6 HOH HOH . G 4 HOH A 4 304 10 HOH HOH . G 4 HOH A 5 305 13 HOH HOH . G 4 HOH A 6 306 14 HOH HOH . G 4 HOH A 7 307 15 HOH HOH . G 4 HOH A 8 308 16 HOH HOH . G 4 HOH A 9 309 20 HOH HOH . G 4 HOH A 10 310 21 HOH HOH . G 4 HOH A 11 311 22 HOH HOH . G 4 HOH A 12 312 24 HOH HOH . G 4 HOH A 13 313 27 HOH HOH . G 4 HOH A 14 314 28 HOH HOH . G 4 HOH A 15 315 29 HOH HOH . G 4 HOH A 16 316 30 HOH HOH . G 4 HOH A 17 317 32 HOH HOH . G 4 HOH A 18 318 33 HOH HOH . G 4 HOH A 19 319 35 HOH HOH . G 4 HOH A 20 320 37 HOH HOH . G 4 HOH A 21 321 39 HOH HOH . G 4 HOH A 22 322 40 HOH HOH . G 4 HOH A 23 323 41 HOH HOH . G 4 HOH A 24 324 43 HOH HOH . G 4 HOH A 25 325 45 HOH HOH . G 4 HOH A 26 326 46 HOH HOH . G 4 HOH A 27 327 51 HOH HOH . G 4 HOH A 28 328 53 HOH HOH . G 4 HOH A 29 329 54 HOH HOH . G 4 HOH A 30 330 56 HOH HOH . G 4 HOH A 31 331 63 HOH HOH . G 4 HOH A 32 332 64 HOH HOH . G 4 HOH A 33 333 66 HOH HOH . G 4 HOH A 34 334 67 HOH HOH . G 4 HOH A 35 335 68 HOH HOH . G 4 HOH A 36 336 70 HOH HOH . G 4 HOH A 37 337 74 HOH HOH . G 4 HOH A 38 338 75 HOH HOH . G 4 HOH A 39 339 79 HOH HOH . G 4 HOH A 40 340 86 HOH HOH . G 4 HOH A 41 341 87 HOH HOH . G 4 HOH A 42 342 88 HOH HOH . G 4 HOH A 43 343 90 HOH HOH . G 4 HOH A 44 344 95 HOH HOH . G 4 HOH A 45 345 96 HOH HOH . G 4 HOH A 46 346 97 HOH HOH . G 4 HOH A 47 347 98 HOH HOH . G 4 HOH A 48 348 103 HOH HOH . G 4 HOH A 49 349 106 HOH HOH . G 4 HOH A 50 350 110 HOH HOH . G 4 HOH A 51 351 115 HOH HOH . G 4 HOH A 52 352 117 HOH HOH . G 4 HOH A 53 353 118 HOH HOH . G 4 HOH A 54 354 119 HOH HOH . G 4 HOH A 55 355 120 HOH HOH . G 4 HOH A 56 356 124 HOH HOH . G 4 HOH A 57 357 125 HOH HOH . G 4 HOH A 58 358 127 HOH HOH . G 4 HOH A 59 359 128 HOH HOH . G 4 HOH A 60 360 129 HOH HOH . G 4 HOH A 61 361 130 HOH HOH . G 4 HOH A 62 362 132 HOH HOH . G 4 HOH A 63 363 136 HOH HOH . G 4 HOH A 64 364 137 HOH HOH . G 4 HOH A 65 365 139 HOH HOH . G 4 HOH A 66 366 141 HOH HOH . G 4 HOH A 67 367 143 HOH HOH . G 4 HOH A 68 368 146 HOH HOH . G 4 HOH A 69 369 151 HOH HOH . G 4 HOH A 70 370 153 HOH HOH . G 4 HOH A 71 371 155 HOH HOH . G 4 HOH A 72 372 158 HOH HOH . G 4 HOH A 73 373 159 HOH HOH . G 4 HOH A 74 374 165 HOH HOH . G 4 HOH A 75 375 166 HOH HOH . G 4 HOH A 76 376 167 HOH HOH . G 4 HOH A 77 377 168 HOH HOH . G 4 HOH A 78 378 172 HOH HOH . G 4 HOH A 79 379 174 HOH HOH . G 4 HOH A 80 380 176 HOH HOH . G 4 HOH A 81 381 177 HOH HOH . G 4 HOH A 82 382 178 HOH HOH . G 4 HOH A 83 383 182 HOH HOH . G 4 HOH A 84 384 185 HOH HOH . G 4 HOH A 85 385 186 HOH HOH . G 4 HOH A 86 386 187 HOH HOH . G 4 HOH A 87 387 189 HOH HOH . G 4 HOH A 88 388 193 HOH HOH . G 4 HOH A 89 389 196 HOH HOH . G 4 HOH A 90 390 199 HOH HOH . G 4 HOH A 91 391 200 HOH HOH . G 4 HOH A 92 392 203 HOH HOH . G 4 HOH A 93 393 205 HOH HOH . G 4 HOH A 94 394 206 HOH HOH . G 4 HOH A 95 395 208 HOH HOH . G 4 HOH A 96 396 209 HOH HOH . G 4 HOH A 97 397 212 HOH HOH . G 4 HOH A 98 398 217 HOH HOH . G 4 HOH A 99 399 220 HOH HOH . G 4 HOH A 100 400 222 HOH HOH . G 4 HOH A 101 401 223 HOH HOH . G 4 HOH A 102 402 229 HOH HOH . G 4 HOH A 103 403 230 HOH HOH . G 4 HOH A 104 404 231 HOH HOH . G 4 HOH A 105 405 232 HOH HOH . G 4 HOH A 106 406 234 HOH HOH . G 4 HOH A 107 407 235 HOH HOH . G 4 HOH A 108 408 238 HOH HOH . G 4 HOH A 109 409 239 HOH HOH . G 4 HOH A 110 410 240 HOH HOH . G 4 HOH A 111 411 241 HOH HOH . G 4 HOH A 112 412 242 HOH HOH . G 4 HOH A 113 413 1 HOH HOH . G 4 HOH A 114 414 1 HOH HOH . G 4 HOH A 115 415 1 HOH HOH . G 4 HOH A 116 416 2 HOH HOH . H 4 HOH B 1 301 4 HOH HOH . H 4 HOH B 2 302 5 HOH HOH . H 4 HOH B 3 303 7 HOH HOH . H 4 HOH B 4 304 8 HOH HOH . H 4 HOH B 5 305 9 HOH HOH . H 4 HOH B 6 306 11 HOH HOH . H 4 HOH B 7 307 17 HOH HOH . H 4 HOH B 8 308 18 HOH HOH . H 4 HOH B 9 309 19 HOH HOH . H 4 HOH B 10 310 26 HOH HOH . H 4 HOH B 11 311 34 HOH HOH . H 4 HOH B 12 312 36 HOH HOH . H 4 HOH B 13 313 38 HOH HOH . H 4 HOH B 14 314 42 HOH HOH . H 4 HOH B 15 315 44 HOH HOH . H 4 HOH B 16 316 47 HOH HOH . H 4 HOH B 17 317 49 HOH HOH . H 4 HOH B 18 318 50 HOH HOH . H 4 HOH B 19 319 52 HOH HOH . H 4 HOH B 20 320 57 HOH HOH . H 4 HOH B 21 321 58 HOH HOH . H 4 HOH B 22 322 59 HOH HOH . H 4 HOH B 23 323 60 HOH HOH . H 4 HOH B 24 324 61 HOH HOH . H 4 HOH B 25 325 62 HOH HOH . H 4 HOH B 26 326 65 HOH HOH . H 4 HOH B 27 327 71 HOH HOH . H 4 HOH B 28 328 72 HOH HOH . H 4 HOH B 29 329 73 HOH HOH . H 4 HOH B 30 330 76 HOH HOH . H 4 HOH B 31 331 77 HOH HOH . H 4 HOH B 32 332 78 HOH HOH . H 4 HOH B 33 333 80 HOH HOH . H 4 HOH B 34 334 81 HOH HOH . H 4 HOH B 35 335 82 HOH HOH . H 4 HOH B 36 336 83 HOH HOH . H 4 HOH B 37 337 84 HOH HOH . H 4 HOH B 38 338 85 HOH HOH . H 4 HOH B 39 339 89 HOH HOH . H 4 HOH B 40 340 91 HOH HOH . H 4 HOH B 41 341 92 HOH HOH . H 4 HOH B 42 342 93 HOH HOH . H 4 HOH B 43 343 94 HOH HOH . H 4 HOH B 44 344 100 HOH HOH . H 4 HOH B 45 345 101 HOH HOH . H 4 HOH B 46 346 102 HOH HOH . H 4 HOH B 47 347 104 HOH HOH . H 4 HOH B 48 348 105 HOH HOH . H 4 HOH B 49 349 108 HOH HOH . H 4 HOH B 50 350 109 HOH HOH . H 4 HOH B 51 351 111 HOH HOH . H 4 HOH B 52 352 112 HOH HOH . H 4 HOH B 53 353 113 HOH HOH . H 4 HOH B 54 354 114 HOH HOH . H 4 HOH B 55 355 122 HOH HOH . H 4 HOH B 56 356 123 HOH HOH . H 4 HOH B 57 357 126 HOH HOH . H 4 HOH B 58 358 131 HOH HOH . H 4 HOH B 59 359 133 HOH HOH . H 4 HOH B 60 360 135 HOH HOH . H 4 HOH B 61 361 140 HOH HOH . H 4 HOH B 62 362 142 HOH HOH . H 4 HOH B 63 363 144 HOH HOH . H 4 HOH B 64 364 145 HOH HOH . H 4 HOH B 65 365 147 HOH HOH . H 4 HOH B 66 366 148 HOH HOH . H 4 HOH B 67 367 150 HOH HOH . H 4 HOH B 68 368 154 HOH HOH . H 4 HOH B 69 369 157 HOH HOH . H 4 HOH B 70 370 160 HOH HOH . H 4 HOH B 71 371 161 HOH HOH . H 4 HOH B 72 372 162 HOH HOH . H 4 HOH B 73 373 163 HOH HOH . H 4 HOH B 74 374 164 HOH HOH . H 4 HOH B 75 375 169 HOH HOH . H 4 HOH B 76 376 170 HOH HOH . H 4 HOH B 77 377 171 HOH HOH . H 4 HOH B 78 378 173 HOH HOH . H 4 HOH B 79 379 175 HOH HOH . H 4 HOH B 80 380 179 HOH HOH . H 4 HOH B 81 381 180 HOH HOH . H 4 HOH B 82 382 181 HOH HOH . H 4 HOH B 83 383 188 HOH HOH . H 4 HOH B 84 384 190 HOH HOH . H 4 HOH B 85 385 191 HOH HOH . H 4 HOH B 86 386 192 HOH HOH . H 4 HOH B 87 387 195 HOH HOH . H 4 HOH B 88 388 201 HOH HOH . H 4 HOH B 89 389 207 HOH HOH . H 4 HOH B 90 390 213 HOH HOH . H 4 HOH B 91 391 214 HOH HOH . H 4 HOH B 92 392 216 HOH HOH . H 4 HOH B 93 393 219 HOH HOH . H 4 HOH B 94 394 221 HOH HOH . H 4 HOH B 95 395 224 HOH HOH . H 4 HOH B 96 396 225 HOH HOH . H 4 HOH B 97 397 228 HOH HOH . H 4 HOH B 98 398 233 HOH HOH . H 4 HOH B 99 399 236 HOH HOH . H 4 HOH B 100 400 237 HOH HOH . H 4 HOH B 101 401 243 HOH HOH . H 4 HOH B 102 402 244 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 5.547 _atom_site.Cartn_y 10.023 _atom_site.Cartn_z 10.233 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 597 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #