data_4LUM # _model_server_result.job_id HzW8PAjofi1WWVaadpn0VQ _model_server_result.datetime_utc '2024-11-24 05:03:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 4LUM # _exptl.entry_id 4LUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FRUCTOSE -6-PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 87.81 _cell.angle_beta 89.86 _cell.angle_gamma 75.47 _cell.entry_id 4LUM _cell.length_a 44.94 _cell.length_b 45.01 _cell.length_c 48.69 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc2 A NE2 HIS 91 A HIS 90 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 A OE1 GLU 98 A GLU 97 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc4 A NE2 HIS 137 A HIS 136 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc5 C MN MN . A MN 201 1_555 D O1 F6R . A F6R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 C MN MN . A MN 201 1_555 D O2 F6R . A F6R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc7 B NE2 HIS 89 B HIS 88 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc8 B NE2 HIS 91 B HIS 90 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc9 B OE1 GLU 98 B GLU 97 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc10 B NE2 HIS 137 B HIS 136 1_555 E MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc11 E MN MN . B MN 201 1_555 F O1 F6R . B F6R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc12 E MN MN . B MN 201 1_555 F O2 F6R . B F6R 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id F6R _chem_comp.mon_nstd_flag . _chem_comp.name 'FRUCTOSE -6-PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 F6R sing 70 n n C1 O1 F6R sing 71 n n C1 H1C1 F6R sing 72 n n C1 H1C2 F6R sing 73 n n C2 C3 F6R sing 74 n n C2 O2 F6R doub 75 n n C3 C4 F6R sing 76 n n C3 O3 F6R sing 77 n n C3 H3 F6R sing 78 n n C4 C5 F6R sing 79 n n C4 O4 F6R sing 80 n n C4 H4 F6R sing 81 n n C5 C6 F6R sing 82 n n C5 O5 F6R sing 83 n n C5 H5 F6R sing 84 n n C6 O6 F6R sing 85 n n C6 H6C1 F6R sing 86 n n C6 H6C2 F6R sing 87 n n O1 H1 F6R sing 88 n n O3 HA F6R sing 89 n n O4 HB F6R sing 90 n n O5 HC F6R sing 91 n n O6 P F6R sing 92 n n P O1P F6R sing 93 n n P O2P F6R sing 94 n n P O3P F6R doub 95 n n HO1 O1P F6R sing 96 n n HO2 O2P F6R sing 97 n n # _atom_sites.entry_id 4LUM _atom_sites.fract_transf_matrix[1][1] 0.022252 _atom_sites.fract_transf_matrix[1][2] -0.005767 _atom_sites.fract_transf_matrix[1][3] 0.00017 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022951 _atom_sites.fract_transf_matrix[2][3] -0.000892 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020554 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 2 MN MN . D 3 F6R A 1 202 1 F6R FPX . E 2 MN B 1 201 1 MN MN . F 3 F6R B 1 202 1 F6R FPX . G 4 HOH A 1 301 1 HOH HOH . G 4 HOH A 2 302 3 HOH HOH . G 4 HOH A 3 303 6 HOH HOH . G 4 HOH A 4 304 10 HOH HOH . G 4 HOH A 5 305 13 HOH HOH . G 4 HOH A 6 306 14 HOH HOH . G 4 HOH A 7 307 15 HOH HOH . G 4 HOH A 8 308 16 HOH HOH . G 4 HOH A 9 309 20 HOH HOH . G 4 HOH A 10 310 21 HOH HOH . G 4 HOH A 11 311 22 HOH HOH . G 4 HOH A 12 312 24 HOH HOH . G 4 HOH A 13 313 27 HOH HOH . G 4 HOH A 14 314 28 HOH HOH . G 4 HOH A 15 315 29 HOH HOH . G 4 HOH A 16 316 30 HOH HOH . G 4 HOH A 17 317 32 HOH HOH . G 4 HOH A 18 318 33 HOH HOH . G 4 HOH A 19 319 35 HOH HOH . G 4 HOH A 20 320 37 HOH HOH . G 4 HOH A 21 321 39 HOH HOH . G 4 HOH A 22 322 40 HOH HOH . G 4 HOH A 23 323 41 HOH HOH . G 4 HOH A 24 324 43 HOH HOH . G 4 HOH A 25 325 45 HOH HOH . G 4 HOH A 26 326 46 HOH HOH . G 4 HOH A 27 327 51 HOH HOH . G 4 HOH A 28 328 53 HOH HOH . G 4 HOH A 29 329 54 HOH HOH . G 4 HOH A 30 330 56 HOH HOH . G 4 HOH A 31 331 63 HOH HOH . G 4 HOH A 32 332 64 HOH HOH . G 4 HOH A 33 333 66 HOH HOH . G 4 HOH A 34 334 67 HOH HOH . G 4 HOH A 35 335 68 HOH HOH . G 4 HOH A 36 336 70 HOH HOH . G 4 HOH A 37 337 74 HOH HOH . G 4 HOH A 38 338 75 HOH HOH . G 4 HOH A 39 339 79 HOH HOH . G 4 HOH A 40 340 86 HOH HOH . G 4 HOH A 41 341 87 HOH HOH . G 4 HOH A 42 342 88 HOH HOH . G 4 HOH A 43 343 90 HOH HOH . G 4 HOH A 44 344 95 HOH HOH . G 4 HOH A 45 345 96 HOH HOH . G 4 HOH A 46 346 97 HOH HOH . G 4 HOH A 47 347 98 HOH HOH . G 4 HOH A 48 348 103 HOH HOH . G 4 HOH A 49 349 106 HOH HOH . G 4 HOH A 50 350 110 HOH HOH . G 4 HOH A 51 351 115 HOH HOH . G 4 HOH A 52 352 117 HOH HOH . G 4 HOH A 53 353 118 HOH HOH . G 4 HOH A 54 354 119 HOH HOH . G 4 HOH A 55 355 120 HOH HOH . G 4 HOH A 56 356 124 HOH HOH . G 4 HOH A 57 357 125 HOH HOH . G 4 HOH A 58 358 127 HOH HOH . G 4 HOH A 59 359 128 HOH HOH . G 4 HOH A 60 360 129 HOH HOH . G 4 HOH A 61 361 130 HOH HOH . G 4 HOH A 62 362 132 HOH HOH . G 4 HOH A 63 363 136 HOH HOH . G 4 HOH A 64 364 137 HOH HOH . G 4 HOH A 65 365 139 HOH HOH . G 4 HOH A 66 366 141 HOH HOH . G 4 HOH A 67 367 143 HOH HOH . G 4 HOH A 68 368 146 HOH HOH . G 4 HOH A 69 369 151 HOH HOH . G 4 HOH A 70 370 153 HOH HOH . G 4 HOH A 71 371 155 HOH HOH . G 4 HOH A 72 372 158 HOH HOH . G 4 HOH A 73 373 159 HOH HOH . G 4 HOH A 74 374 165 HOH HOH . G 4 HOH A 75 375 166 HOH HOH . G 4 HOH A 76 376 167 HOH HOH . G 4 HOH A 77 377 168 HOH HOH . G 4 HOH A 78 378 172 HOH HOH . G 4 HOH A 79 379 174 HOH HOH . G 4 HOH A 80 380 176 HOH HOH . G 4 HOH A 81 381 177 HOH HOH . G 4 HOH A 82 382 178 HOH HOH . G 4 HOH A 83 383 182 HOH HOH . G 4 HOH A 84 384 185 HOH HOH . G 4 HOH A 85 385 186 HOH HOH . G 4 HOH A 86 386 187 HOH HOH . G 4 HOH A 87 387 189 HOH HOH . G 4 HOH A 88 388 193 HOH HOH . G 4 HOH A 89 389 196 HOH HOH . G 4 HOH A 90 390 199 HOH HOH . G 4 HOH A 91 391 200 HOH HOH . G 4 HOH A 92 392 203 HOH HOH . G 4 HOH A 93 393 205 HOH HOH . G 4 HOH A 94 394 206 HOH HOH . G 4 HOH A 95 395 208 HOH HOH . G 4 HOH A 96 396 209 HOH HOH . G 4 HOH A 97 397 212 HOH HOH . G 4 HOH A 98 398 217 HOH HOH . G 4 HOH A 99 399 220 HOH HOH . G 4 HOH A 100 400 222 HOH HOH . G 4 HOH A 101 401 223 HOH HOH . G 4 HOH A 102 402 229 HOH HOH . G 4 HOH A 103 403 230 HOH HOH . G 4 HOH A 104 404 231 HOH HOH . G 4 HOH A 105 405 232 HOH HOH . G 4 HOH A 106 406 234 HOH HOH . G 4 HOH A 107 407 235 HOH HOH . G 4 HOH A 108 408 238 HOH HOH . G 4 HOH A 109 409 239 HOH HOH . G 4 HOH A 110 410 240 HOH HOH . G 4 HOH A 111 411 241 HOH HOH . G 4 HOH A 112 412 242 HOH HOH . G 4 HOH A 113 413 1 HOH HOH . G 4 HOH A 114 414 1 HOH HOH . G 4 HOH A 115 415 1 HOH HOH . G 4 HOH A 116 416 2 HOH HOH . H 4 HOH B 1 301 4 HOH HOH . H 4 HOH B 2 302 5 HOH HOH . H 4 HOH B 3 303 7 HOH HOH . H 4 HOH B 4 304 8 HOH HOH . H 4 HOH B 5 305 9 HOH HOH . H 4 HOH B 6 306 11 HOH HOH . H 4 HOH B 7 307 17 HOH HOH . H 4 HOH B 8 308 18 HOH HOH . H 4 HOH B 9 309 19 HOH HOH . H 4 HOH B 10 310 26 HOH HOH . H 4 HOH B 11 311 34 HOH HOH . H 4 HOH B 12 312 36 HOH HOH . H 4 HOH B 13 313 38 HOH HOH . H 4 HOH B 14 314 42 HOH HOH . H 4 HOH B 15 315 44 HOH HOH . H 4 HOH B 16 316 47 HOH HOH . H 4 HOH B 17 317 49 HOH HOH . H 4 HOH B 18 318 50 HOH HOH . H 4 HOH B 19 319 52 HOH HOH . H 4 HOH B 20 320 57 HOH HOH . H 4 HOH B 21 321 58 HOH HOH . H 4 HOH B 22 322 59 HOH HOH . H 4 HOH B 23 323 60 HOH HOH . H 4 HOH B 24 324 61 HOH HOH . H 4 HOH B 25 325 62 HOH HOH . H 4 HOH B 26 326 65 HOH HOH . H 4 HOH B 27 327 71 HOH HOH . H 4 HOH B 28 328 72 HOH HOH . H 4 HOH B 29 329 73 HOH HOH . H 4 HOH B 30 330 76 HOH HOH . H 4 HOH B 31 331 77 HOH HOH . H 4 HOH B 32 332 78 HOH HOH . H 4 HOH B 33 333 80 HOH HOH . H 4 HOH B 34 334 81 HOH HOH . H 4 HOH B 35 335 82 HOH HOH . H 4 HOH B 36 336 83 HOH HOH . H 4 HOH B 37 337 84 HOH HOH . H 4 HOH B 38 338 85 HOH HOH . H 4 HOH B 39 339 89 HOH HOH . H 4 HOH B 40 340 91 HOH HOH . H 4 HOH B 41 341 92 HOH HOH . H 4 HOH B 42 342 93 HOH HOH . H 4 HOH B 43 343 94 HOH HOH . H 4 HOH B 44 344 100 HOH HOH . H 4 HOH B 45 345 101 HOH HOH . H 4 HOH B 46 346 102 HOH HOH . H 4 HOH B 47 347 104 HOH HOH . H 4 HOH B 48 348 105 HOH HOH . H 4 HOH B 49 349 108 HOH HOH . H 4 HOH B 50 350 109 HOH HOH . H 4 HOH B 51 351 111 HOH HOH . H 4 HOH B 52 352 112 HOH HOH . H 4 HOH B 53 353 113 HOH HOH . H 4 HOH B 54 354 114 HOH HOH . H 4 HOH B 55 355 122 HOH HOH . H 4 HOH B 56 356 123 HOH HOH . H 4 HOH B 57 357 126 HOH HOH . H 4 HOH B 58 358 131 HOH HOH . H 4 HOH B 59 359 133 HOH HOH . H 4 HOH B 60 360 135 HOH HOH . H 4 HOH B 61 361 140 HOH HOH . H 4 HOH B 62 362 142 HOH HOH . H 4 HOH B 63 363 144 HOH HOH . H 4 HOH B 64 364 145 HOH HOH . H 4 HOH B 65 365 147 HOH HOH . H 4 HOH B 66 366 148 HOH HOH . H 4 HOH B 67 367 150 HOH HOH . H 4 HOH B 68 368 154 HOH HOH . H 4 HOH B 69 369 157 HOH HOH . H 4 HOH B 70 370 160 HOH HOH . H 4 HOH B 71 371 161 HOH HOH . H 4 HOH B 72 372 162 HOH HOH . H 4 HOH B 73 373 163 HOH HOH . H 4 HOH B 74 374 164 HOH HOH . H 4 HOH B 75 375 169 HOH HOH . H 4 HOH B 76 376 170 HOH HOH . H 4 HOH B 77 377 171 HOH HOH . H 4 HOH B 78 378 173 HOH HOH . H 4 HOH B 79 379 175 HOH HOH . H 4 HOH B 80 380 179 HOH HOH . H 4 HOH B 81 381 180 HOH HOH . H 4 HOH B 82 382 181 HOH HOH . H 4 HOH B 83 383 188 HOH HOH . H 4 HOH B 84 384 190 HOH HOH . H 4 HOH B 85 385 191 HOH HOH . H 4 HOH B 86 386 192 HOH HOH . H 4 HOH B 87 387 195 HOH HOH . H 4 HOH B 88 388 201 HOH HOH . H 4 HOH B 89 389 207 HOH HOH . H 4 HOH B 90 390 213 HOH HOH . H 4 HOH B 91 391 214 HOH HOH . H 4 HOH B 92 392 216 HOH HOH . H 4 HOH B 93 393 219 HOH HOH . H 4 HOH B 94 394 221 HOH HOH . H 4 HOH B 95 395 224 HOH HOH . H 4 HOH B 96 396 225 HOH HOH . H 4 HOH B 97 397 228 HOH HOH . H 4 HOH B 98 398 233 HOH HOH . H 4 HOH B 99 399 236 HOH HOH . H 4 HOH B 100 400 237 HOH HOH . H 4 HOH B 101 401 243 HOH HOH . H 4 HOH B 102 402 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F6R . . . F 3 14.767 -7.533 2.054 1 28.83 ? C1 F6R 202 B 1 HETATM 2 C C2 F6R . . . F 3 16.196 -7.34 1.571 1 28.14 ? C2 F6R 202 B 1 HETATM 3 C C3 F6R . . . F 3 17.368 -7.653 2.47 1 28.05 ? C3 F6R 202 B 1 HETATM 4 C C4 F6R . . . F 3 17.915 -9.004 2.002 1 27.41 ? C4 F6R 202 B 1 HETATM 5 C C5 F6R . . . F 3 19.145 -9.475 2.78 1 26.27 ? C5 F6R 202 B 1 HETATM 6 C C6 F6R . . . F 3 19.568 -10.89 2.377 1 27.03 ? C6 F6R 202 B 1 HETATM 7 O O1 F6R . . . F 3 13.796 -7.162 1.051 1 30.24 ? O1 F6R 202 B 1 HETATM 8 O O2 F6R . . . F 3 16.425 -6.95 0.432 1 26.03 ? O2 F6R 202 B 1 HETATM 9 O O3 F6R . . . F 3 16.983 -7.697 3.859 1 29.14 ? O3 F6R 202 B 1 HETATM 10 O O4 F6R . . . F 3 16.859 -9.978 2.094 1 28.07 ? O4 F6R 202 B 1 HETATM 11 O O5 F6R . . . F 3 20.228 -8.562 2.552 1 24.43 ? O5 F6R 202 B 1 HETATM 12 O O6 F6R . . . F 3 19.712 -10.973 0.948 1 27.84 ? O6 F6R 202 B 1 HETATM 13 P P F6R . . . F 3 18.897 -12.061 0.072 1 28.38 ? P F6R 202 B 1 HETATM 14 O O1P F6R . . . F 3 17.444 -11.922 0.47 1 28.81 ? O1P F6R 202 B 1 HETATM 15 O O2P F6R . . . F 3 19.498 -13.398 0.46 1 28.99 ? O2P F6R 202 B 1 HETATM 16 O O3P F6R . . . F 3 19.175 -11.619 -1.341 1 26.39 ? O3P F6R 202 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #