data_4LV7 # _model_server_result.job_id a4nOAOdB-Ik5tZ5hoCfO9w _model_server_result.datetime_utc '2024-11-13 01:57:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4LV7 # _exptl.entry_id 4LV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 83.01 _cell.angle_beta 89.92 _cell.angle_gamma 63.41 _cell.entry_id 4LV7 _cell.length_a 59.763 _cell.length_b 59.353 _cell.length_c 82.232 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F 1 1 B,G,H,I,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 116 A CYS 82 1_555 A SG CYS 176 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 B SG CYS 116 B CYS 82 1_555 B SG CYS 176 B CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc1 A ND1 HIS 354 A HIS 320 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 A SG CYS 364 A CYS 330 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc3 A SG CYS 367 A CYS 333 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc4 A NE2 HIS 380 A HIS 346 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc5 A OD1 ASP 441 A ASP 407 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc6 A OG SER 443 A SER 409 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.952 ? metalc ? metalc7 D O1B ADP . A ADP 502 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.566 ? metalc ? metalc8 B ND1 HIS 354 B HIS 320 1_555 J ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc9 B SG CYS 364 B CYS 330 1_555 J ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc10 B SG CYS 367 B CYS 333 1_555 J ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc11 B NE2 HIS 380 B HIS 346 1_555 J ZN ZN . B ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc12 G O22 IHP . B IHP 501 1_555 I MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc13 H O2B ADP . B ADP 502 1_555 I MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc14 H O1A ADP . B ADP 502 1_555 I MG MG . B MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.874 ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 194 n n C1 C6 IHP sing 195 n n C1 O11 IHP sing 196 n n C1 H1 IHP sing 197 n n C2 C3 IHP sing 198 n n C2 O12 IHP sing 199 n n C2 H2 IHP sing 200 n n C3 C4 IHP sing 201 n n C3 O13 IHP sing 202 n n C3 H3 IHP sing 203 n n C4 C5 IHP sing 204 n n C4 O14 IHP sing 205 n n C4 H4 IHP sing 206 n n C5 C6 IHP sing 207 n n C5 O15 IHP sing 208 n n C5 H5 IHP sing 209 n n C6 O16 IHP sing 210 n n C6 H6 IHP sing 211 n n O11 P1 IHP sing 212 n n P1 O21 IHP doub 213 n n P1 O31 IHP sing 214 n n P1 O41 IHP sing 215 n n O31 H31 IHP sing 216 n n O41 H41 IHP sing 217 n n O12 P2 IHP sing 218 n n P2 O22 IHP doub 219 n n P2 O32 IHP sing 220 n n P2 O42 IHP sing 221 n n O32 H32 IHP sing 222 n n O42 H42 IHP sing 223 n n O13 P3 IHP sing 224 n n P3 O23 IHP doub 225 n n P3 O33 IHP sing 226 n n P3 O43 IHP sing 227 n n O33 H33 IHP sing 228 n n O43 H43 IHP sing 229 n n O14 P4 IHP sing 230 n n P4 O24 IHP doub 231 n n P4 O34 IHP sing 232 n n P4 O44 IHP sing 233 n n O34 H34 IHP sing 234 n n O44 H44 IHP sing 235 n n O15 P5 IHP sing 236 n n P5 O25 IHP doub 237 n n P5 O35 IHP sing 238 n n P5 O45 IHP sing 239 n n O35 H35 IHP sing 240 n n O45 H45 IHP sing 241 n n O16 P6 IHP sing 242 n n P6 O26 IHP doub 243 n n P6 O36 IHP sing 244 n n P6 O46 IHP sing 245 n n O36 H36 IHP sing 246 n n O46 H46 IHP sing 247 n n # _atom_sites.entry_id 4LV7 _atom_sites.fract_transf_matrix[1][1] 0.016733 _atom_sites.fract_transf_matrix[1][2] -0.008374 _atom_sites.fract_transf_matrix[1][3] 0.00112 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01884 _atom_sites.fract_transf_matrix[2][3] -0.002573 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP A 1 501 500 IHP IHP . D 3 ADP A 1 502 600 ADP ADP . E 4 MG A 1 503 700 MG MG . F 5 ZN A 1 504 800 ZN ZN . G 2 IHP B 1 501 500 IHP IHP . H 3 ADP B 1 502 600 ADP ADP . I 4 MG B 1 503 700 MG MG . J 5 ZN B 1 504 800 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . C 2 -10.266 28.992 15.741 1 18.48 ? C1 IHP 501 A 1 HETATM 2 C C2 IHP . . . C 2 -9.556 27.818 16.306 1 21.58 ? C2 IHP 501 A 1 HETATM 3 C C3 IHP . . . C 2 -9.764 26.731 15.306 1 23.2 ? C3 IHP 501 A 1 HETATM 4 C C4 IHP . . . C 2 -8.757 27.088 14.273 1 20.56 ? C4 IHP 501 A 1 HETATM 5 C C5 IHP . . . C 2 -8.935 28.507 13.758 1 19.36 ? C5 IHP 501 A 1 HETATM 6 C C6 IHP . . . C 2 -9.261 29.54 14.806 1 17.79 ? C6 IHP 501 A 1 HETATM 7 O O11 IHP . . . C 2 -10.584 29.897 16.736 1 27.67 ? O11 IHP 501 A 1 HETATM 8 P P1 IHP . . . C 2 -11.974 30.587 17.024 1 31.3 ? P1 IHP 501 A 1 HETATM 9 O O21 IHP . . . C 2 -12.292 31.595 15.936 1 23.61 ? O21 IHP 501 A 1 HETATM 10 O O31 IHP . . . C 2 -11.842 31.209 18.409 1 16.89 ? O31 IHP 501 A 1 HETATM 11 O O41 IHP . . . C 2 -13.089 29.568 17.137 1 25.1 ? O41 IHP 501 A 1 HETATM 12 O O12 IHP . . . C 2 -10.061 27.514 17.534 1 20.89 ? O12 IHP 501 A 1 HETATM 13 P P2 IHP . . . C 2 -9.233 27.241 18.817 1 25.7 ? P2 IHP 501 A 1 HETATM 14 O O22 IHP . . . C 2 -8.773 28.486 19.572 1 19.86 ? O22 IHP 501 A 1 HETATM 15 O O32 IHP . . . C 2 -10.256 26.439 19.584 1 32.2 ? O32 IHP 501 A 1 HETATM 16 O O42 IHP . . . C 2 -8.091 26.285 18.593 1 27.4 ? O42 IHP 501 A 1 HETATM 17 O O13 IHP . . . C 2 -9.515 25.454 15.806 1 20.59 ? O13 IHP 501 A 1 HETATM 18 P P3 IHP . . . C 2 -10.665 24.453 16.194 1 23.44 ? P3 IHP 501 A 1 HETATM 19 O O23 IHP . . . C 2 -10.851 24.497 17.694 1 18.46 ? O23 IHP 501 A 1 HETATM 20 O O33 IHP . . . C 2 -11.976 24.839 15.525 1 18.89 ? O33 IHP 501 A 1 HETATM 21 O O43 IHP . . . C 2 -10.265 23.062 15.714 1 15.19 ? O43 IHP 501 A 1 HETATM 22 O O14 IHP . . . C 2 -8.788 26.12 13.293 1 19.53 ? O14 IHP 501 A 1 HETATM 23 P P4 IHP . . . C 2 -7.45 25.489 12.748 1 22.35 ? P4 IHP 501 A 1 HETATM 24 O O24 IHP . . . C 2 -6.93 26.366 11.649 1 17.84 ? O24 IHP 501 A 1 HETATM 25 O O34 IHP . . . C 2 -6.411 25.384 13.83 1 16.18 ? O34 IHP 501 A 1 HETATM 26 O O44 IHP . . . C 2 -7.763 24.113 12.197 1 15.39 ? O44 IHP 501 A 1 HETATM 27 O O15 IHP . . . C 2 -7.769 28.911 13.169 1 17.62 ? O15 IHP 501 A 1 HETATM 28 P P5 IHP . . . C 2 -7.698 29.473 11.72 1 17.04 ? P5 IHP 501 A 1 HETATM 29 O O25 IHP . . . C 2 -7.915 28.373 10.712 1 18.45 ? O25 IHP 501 A 1 HETATM 30 O O35 IHP . . . C 2 -8.688 30.586 11.499 1 15.56 ? O35 IHP 501 A 1 HETATM 31 O O45 IHP . . . C 2 -6.322 30.099 11.609 1 13.75 ? O45 IHP 501 A 1 HETATM 32 O O16 IHP . . . C 2 -9.73 30.731 14.274 1 21.32 ? O16 IHP 501 A 1 HETATM 33 P P6 IHP . . . C 2 -9.02 32.128 14.468 1 23.33 ? P6 IHP 501 A 1 HETATM 34 O O26 IHP . . . C 2 -8.786 32.783 13.131 1 20.36 ? O26 IHP 501 A 1 HETATM 35 O O36 IHP . . . C 2 -9.887 33.022 15.346 1 14.87 ? O36 IHP 501 A 1 HETATM 36 O O46 IHP . . . C 2 -7.72 31.905 15.175 1 17.3 ? O46 IHP 501 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 36 #