data_4LVJ
#
_model_server_result.job_id            ydlriELqMORionMZjH56xA 
_model_server_result.datetime_utc      '2025-03-28 06:41:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    4LVJ 
#
_exptl.entry_id    4LVJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4LVJ 
_cell.length_a            112.02 
_cell.length_b            112.02 
_cell.length_c            90.61 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 21 A HIS 22 1_555 D MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? 
metalc ? metalc2 A ND1 HIS 125 A HIS 126 1_555 D MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 A OE2 GLU 128 A GLU 129 1_555 D MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc4 A NE2 HIS 132 A HIS 133 1_555 D MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc5 A NE2 HIS 134 A HIS 135 1_555 D MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc6 D MN MN . A MN 201 1_555 C O3' DG 15 C DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
hydrog WATSON-CRICK hydrog1 B N1 DA 1 B DA 1 1_555 C N3 DT 7 C DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog2 B N6 DA 1 B DA 1 1_555 C O4 DT 7 C DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog3 B N3 DC 2 B DC 2 1_555 C N1 DG 6 C DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog4 B N4 DC 2 B DC 2 1_555 C O6 DG 6 C DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog5 B O2 DC 2 B DC 2 1_555 C N2 DG 6 C DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog6 B N3 DT 3 B DT 3 1_555 C N1 DA 5 C DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog7 B O4 DT 3 B DT 3 1_555 C N6 DA 5 C DA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog8 B N3 DT 4 B DT 4 1_555 C N1 DA 4 C DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog9 B O4 DT 4 B DT 4 1_555 C N6 DA 4 C DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog10 B N3 DT 5 B DT 5 1_555 C N1 DA 3 C DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog11 B O4 DT 5 B DT 5 1_555 C N6 DA 3 C DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog12 B N1 DA 6 B DA 6 1_555 C N3 DT 2 C DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog13 B N6 DA 6 B DA 6 1_555 C O4 DT 2 C DT 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog14 B N3 DT 7 B DT 7 1_555 C N1 DA 1 C DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog WATSON-CRICK hydrog15 B O4 DT 7 B DT 7 1_555 C N6 DA 1 C DA 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_28_PAIR hydrog16 C N3 DT 12 C DT 23 1_555 C O6 DG 15 C DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
hydrog TYPE_28_PAIR hydrog17 C O2 DT 12 C DT 23 1_555 C N1 DG 15 C DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4LVJ 
_atom_sites.fract_transf_matrix[1][1]    0.008927 
_atom_sites.fract_transf_matrix[1][2]    0.005154 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010308 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011036 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 MN A 1 201 1 MN MN . 
E 5 ACT A 1 202 1 ACT ACT . 
F 6 HOH A 1 301 1 HOH HOH . 
F 6 HOH A 2 302 2 HOH HOH . 
F 6 HOH A 3 303 3 HOH HOH . 
F 6 HOH A 4 304 4 HOH HOH . 
F 6 HOH A 5 305 6 HOH HOH . 
F 6 HOH A 6 306 7 HOH HOH . 
F 6 HOH A 7 307 10 HOH HOH . 
F 6 HOH A 8 308 11 HOH HOH . 
F 6 HOH A 9 309 13 HOH HOH . 
F 6 HOH A 10 310 16 HOH HOH . 
F 6 HOH A 11 311 18 HOH HOH . 
F 6 HOH A 12 312 20 HOH HOH . 
F 6 HOH A 13 313 21 HOH HOH . 
F 6 HOH A 14 314 22 HOH HOH . 
F 6 HOH A 15 315 24 HOH HOH . 
F 6 HOH A 16 316 26 HOH HOH . 
F 6 HOH A 17 317 27 HOH HOH . 
F 6 HOH A 18 318 28 HOH HOH . 
F 6 HOH A 19 319 33 HOH HOH . 
F 6 HOH A 20 320 34 HOH HOH . 
F 6 HOH A 21 321 35 HOH HOH . 
F 6 HOH A 22 322 36 HOH HOH . 
F 6 HOH A 23 323 37 HOH HOH . 
F 6 HOH A 24 324 38 HOH HOH . 
F 6 HOH A 25 325 39 HOH HOH . 
F 6 HOH A 26 326 41 HOH HOH . 
F 6 HOH A 27 327 44 HOH HOH . 
F 6 HOH A 28 328 45 HOH HOH . 
F 6 HOH A 29 329 46 HOH HOH . 
F 6 HOH A 30 330 48 HOH HOH . 
F 6 HOH A 31 331 49 HOH HOH . 
F 6 HOH A 32 332 52 HOH HOH . 
F 6 HOH A 33 333 53 HOH HOH . 
F 6 HOH A 34 334 54 HOH HOH . 
F 6 HOH A 35 335 55 HOH HOH . 
F 6 HOH A 36 336 56 HOH HOH . 
F 6 HOH A 37 337 57 HOH HOH . 
F 6 HOH A 38 338 58 HOH HOH . 
F 6 HOH A 39 339 59 HOH HOH . 
F 6 HOH A 40 340 60 HOH HOH . 
F 6 HOH A 41 341 61 HOH HOH . 
F 6 HOH A 42 342 63 HOH HOH . 
F 6 HOH A 43 343 64 HOH HOH . 
F 6 HOH A 44 344 65 HOH HOH . 
F 6 HOH A 45 345 66 HOH HOH . 
F 6 HOH A 46 346 68 HOH HOH . 
F 6 HOH A 47 347 70 HOH HOH . 
F 6 HOH A 48 348 72 HOH HOH . 
F 6 HOH A 49 349 73 HOH HOH . 
F 6 HOH A 50 350 75 HOH HOH . 
F 6 HOH A 51 351 76 HOH HOH . 
F 6 HOH A 52 352 78 HOH HOH . 
F 6 HOH A 53 353 80 HOH HOH . 
F 6 HOH A 54 354 81 HOH HOH . 
F 6 HOH A 55 355 83 HOH HOH . 
F 6 HOH A 56 356 84 HOH HOH . 
F 6 HOH A 57 357 85 HOH HOH . 
F 6 HOH A 58 358 86 HOH HOH . 
F 6 HOH A 59 359 90 HOH HOH . 
F 6 HOH A 60 360 94 HOH HOH . 
F 6 HOH A 61 361 95 HOH HOH . 
F 6 HOH A 62 362 98 HOH HOH . 
F 6 HOH A 63 363 99 HOH HOH . 
F 6 HOH A 64 364 102 HOH HOH . 
F 6 HOH A 65 365 103 HOH HOH . 
F 6 HOH A 66 366 104 HOH HOH . 
F 6 HOH A 67 367 105 HOH HOH . 
F 6 HOH A 68 368 106 HOH HOH . 
F 6 HOH A 69 369 107 HOH HOH . 
F 6 HOH A 70 370 108 HOH HOH . 
F 6 HOH A 71 371 109 HOH HOH . 
F 6 HOH A 72 372 110 HOH HOH . 
G 6 HOH B 1 101 23 HOH HOH . 
G 6 HOH B 2 102 29 HOH HOH . 
G 6 HOH B 3 103 30 HOH HOH . 
G 6 HOH B 4 104 79 HOH HOH . 
G 6 HOH B 5 105 82 HOH HOH . 
G 6 HOH B 6 106 92 HOH HOH . 
H 6 HOH C 1 101 12 HOH HOH . 
H 6 HOH C 2 102 31 HOH HOH . 
H 6 HOH C 3 103 5 HOH HOH . 
H 6 HOH C 4 104 8 HOH HOH . 
H 6 HOH C 5 105 9 HOH HOH . 
H 6 HOH C 6 106 14 HOH HOH . 
H 6 HOH C 7 107 15 HOH HOH . 
H 6 HOH C 8 108 17 HOH HOH . 
H 6 HOH C 9 109 19 HOH HOH . 
H 6 HOH C 10 110 25 HOH HOH . 
H 6 HOH C 11 111 32 HOH HOH . 
H 6 HOH C 12 112 40 HOH HOH . 
H 6 HOH C 13 113 42 HOH HOH . 
H 6 HOH C 14 114 43 HOH HOH . 
H 6 HOH C 15 115 50 HOH HOH . 
H 6 HOH C 16 116 51 HOH HOH . 
H 6 HOH C 17 117 67 HOH HOH . 
H 6 HOH C 18 118 69 HOH HOH . 
H 6 HOH C 19 119 71 HOH HOH . 
H 6 HOH C 20 120 74 HOH HOH . 
H 6 HOH C 21 121 77 HOH HOH . 
H 6 HOH C 22 122 88 HOH HOH . 
H 6 HOH C 23 123 91 HOH HOH . 
H 6 HOH C 24 124 96 HOH HOH . 
H 6 HOH C 25 125 100 HOH HOH . 
H 6 HOH C 26 126 101 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -9.494 
_atom_site.Cartn_y               46.542 
_atom_site.Cartn_z               -9.492 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        20.06 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           1 
#