data_4LVN # _model_server_result.job_id MqiaNiL00M56qno1dxwByw _model_server_result.datetime_utc '2025-02-05 14:58:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lvn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":704}' # _entry.id 4LVN # _exptl.entry_id 4LVN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.33 _cell.angle_gamma 90 _cell.entry_id 4LVN _cell.length_a 73.5 _cell.length_b 74.79 _cell.length_c 78.85 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LVN _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 42 A CYS 369 1_555 A SG CYS 152 A CYS 479 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 131 A CYS 458 1_555 A SG CYS 148 A CYS 475 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 A SG CYS 194 A CYS 521 1_555 A SG CYS 207 A CYS 534 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 B SG CYS 23 B CYS 23 1_555 B SG CYS 89 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf5 B SG CYS 135 B CYS 135 1_555 B SG CYS 195 B CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 22 C CYS 22 1_555 C SG CYS 96 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf7 C SG CYS 147 C CYS 147 1_555 C SG CYS 202 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc1 A OE2 GLU 11 A GLU 338 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc2 A OD1 ASP 54 A ASP 381 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc3 A OD2 ASP 54 A ASP 381 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc4 A OE1 GLU 65 A GLU 392 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? metalc ? metalc5 A OE2 GLU 65 A GLU 392 1_555 H CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc6 A O ARG 69 A ARG 396 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 A O PHE 72 A PHE 399 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc8 A OD1 ASP 73 A ASP 400 1_555 H CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc9 A OD1 ASP 74 A ASP 401 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc10 A OD1 ASP 75 A ASP 402 1_555 H CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc11 A OD1 ASN 77 A ASN 404 1_555 H CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc12 A O ILE 79 A ILE 406 1_555 H CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc13 A OD1 ASP 81 A ASP 408 1_555 G CA CA . A CA 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc14 A OD1 ASP 82 A ASP 409 1_555 H CA CA . A CA 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? metalc ? metalc15 A O ILE 112 A ILE 439 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc16 A OD1 ASN 115 A ASN 442 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc17 A O ILE 117 A ILE 444 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc18 A O VAL 119 A VAL 446 1_555 F CA CA . A CA 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc19 A NE2 HIS 137 A HIS 464 1_555 E NI NI . A NI 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc20 G CA CA . A CA 703 1_555 J O HOH . A HOH 891 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4LVN _atom_sites.fract_transf_matrix[1][1] 0.013605 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003224 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013371 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NI A 1 701 1 NI NI . F 6 CA A 1 702 1 CA CA . G 6 CA A 1 703 2 CA CA . H 6 CA A 1 704 3 CA CA . I 5 NI P 1 301 2 NI NI . J 7 HOH A 1 801 2 HOH HOH . J 7 HOH A 2 802 3 HOH HOH . J 7 HOH A 3 803 5 HOH HOH . J 7 HOH A 4 804 7 HOH HOH . J 7 HOH A 5 805 8 HOH HOH . J 7 HOH A 6 806 9 HOH HOH . J 7 HOH A 7 807 10 HOH HOH . J 7 HOH A 8 808 13 HOH HOH . J 7 HOH A 9 809 15 HOH HOH . J 7 HOH A 10 810 22 HOH HOH . J 7 HOH A 11 811 25 HOH HOH . J 7 HOH A 12 812 26 HOH HOH . J 7 HOH A 13 813 28 HOH HOH . J 7 HOH A 14 814 30 HOH HOH . J 7 HOH A 15 815 32 HOH HOH . J 7 HOH A 16 816 33 HOH HOH . J 7 HOH A 17 817 34 HOH HOH . J 7 HOH A 18 818 35 HOH HOH . J 7 HOH A 19 819 36 HOH HOH . J 7 HOH A 20 820 37 HOH HOH . J 7 HOH A 21 821 39 HOH HOH . J 7 HOH A 22 822 41 HOH HOH . J 7 HOH A 23 823 42 HOH HOH . J 7 HOH A 24 824 43 HOH HOH . J 7 HOH A 25 825 44 HOH HOH . J 7 HOH A 26 826 45 HOH HOH . J 7 HOH A 27 827 47 HOH HOH . J 7 HOH A 28 828 48 HOH HOH . J 7 HOH A 29 829 51 HOH HOH . J 7 HOH A 30 830 54 HOH HOH . J 7 HOH A 31 831 55 HOH HOH . J 7 HOH A 32 832 57 HOH HOH . J 7 HOH A 33 833 58 HOH HOH . J 7 HOH A 34 834 60 HOH HOH . J 7 HOH A 35 835 61 HOH HOH . J 7 HOH A 36 836 64 HOH HOH . J 7 HOH A 37 837 72 HOH HOH . J 7 HOH A 38 838 73 HOH HOH . J 7 HOH A 39 839 74 HOH HOH . J 7 HOH A 40 840 75 HOH HOH . J 7 HOH A 41 841 77 HOH HOH . J 7 HOH A 42 842 81 HOH HOH . J 7 HOH A 43 843 84 HOH HOH . J 7 HOH A 44 844 87 HOH HOH . J 7 HOH A 45 845 88 HOH HOH . J 7 HOH A 46 846 89 HOH HOH . J 7 HOH A 47 847 90 HOH HOH . J 7 HOH A 48 848 93 HOH HOH . J 7 HOH A 49 849 98 HOH HOH . J 7 HOH A 50 850 100 HOH HOH . J 7 HOH A 51 851 104 HOH HOH . J 7 HOH A 52 852 105 HOH HOH . J 7 HOH A 53 853 108 HOH HOH . J 7 HOH A 54 854 109 HOH HOH . J 7 HOH A 55 855 110 HOH HOH . J 7 HOH A 56 856 111 HOH HOH . J 7 HOH A 57 857 112 HOH HOH . J 7 HOH A 58 858 117 HOH HOH . J 7 HOH A 59 859 120 HOH HOH . J 7 HOH A 60 860 125 HOH HOH . J 7 HOH A 61 861 131 HOH HOH . J 7 HOH A 62 862 132 HOH HOH . J 7 HOH A 63 863 135 HOH HOH . J 7 HOH A 64 864 138 HOH HOH . J 7 HOH A 65 865 139 HOH HOH . J 7 HOH A 66 866 141 HOH HOH . J 7 HOH A 67 867 143 HOH HOH . J 7 HOH A 68 868 144 HOH HOH . J 7 HOH A 69 869 153 HOH HOH . J 7 HOH A 70 870 154 HOH HOH . J 7 HOH A 71 871 157 HOH HOH . J 7 HOH A 72 872 158 HOH HOH . J 7 HOH A 73 873 159 HOH HOH . J 7 HOH A 74 874 162 HOH HOH . J 7 HOH A 75 875 166 HOH HOH . J 7 HOH A 76 876 174 HOH HOH . J 7 HOH A 77 877 178 HOH HOH . J 7 HOH A 78 878 183 HOH HOH . J 7 HOH A 79 879 186 HOH HOH . J 7 HOH A 80 880 189 HOH HOH . J 7 HOH A 81 881 197 HOH HOH . J 7 HOH A 82 882 204 HOH HOH . J 7 HOH A 83 883 217 HOH HOH . J 7 HOH A 84 884 222 HOH HOH . J 7 HOH A 85 885 223 HOH HOH . J 7 HOH A 86 886 224 HOH HOH . J 7 HOH A 87 887 225 HOH HOH . J 7 HOH A 88 888 226 HOH HOH . J 7 HOH A 89 889 228 HOH HOH . J 7 HOH A 90 890 233 HOH HOH . J 7 HOH A 91 891 239 HOH HOH . J 7 HOH A 92 892 152 HOH HOH . K 7 HOH B 1 301 1 HOH HOH . K 7 HOH B 2 302 11 HOH HOH . K 7 HOH B 3 303 17 HOH HOH . K 7 HOH B 4 304 18 HOH HOH . K 7 HOH B 5 305 19 HOH HOH . K 7 HOH B 6 306 20 HOH HOH . K 7 HOH B 7 307 23 HOH HOH . K 7 HOH B 8 308 27 HOH HOH . K 7 HOH B 9 309 29 HOH HOH . K 7 HOH B 10 310 31 HOH HOH . K 7 HOH B 11 311 38 HOH HOH . K 7 HOH B 12 312 40 HOH HOH . K 7 HOH B 13 313 46 HOH HOH . K 7 HOH B 14 314 49 HOH HOH . K 7 HOH B 15 315 56 HOH HOH . K 7 HOH B 16 316 62 HOH HOH . K 7 HOH B 17 317 66 HOH HOH . K 7 HOH B 18 318 67 HOH HOH . K 7 HOH B 19 319 68 HOH HOH . K 7 HOH B 20 320 69 HOH HOH . K 7 HOH B 21 321 70 HOH HOH . K 7 HOH B 22 322 78 HOH HOH . K 7 HOH B 23 323 79 HOH HOH . K 7 HOH B 24 324 82 HOH HOH . K 7 HOH B 25 325 85 HOH HOH . K 7 HOH B 26 326 92 HOH HOH . K 7 HOH B 27 327 99 HOH HOH . K 7 HOH B 28 328 101 HOH HOH . K 7 HOH B 29 329 103 HOH HOH . K 7 HOH B 30 330 114 HOH HOH . K 7 HOH B 31 331 115 HOH HOH . K 7 HOH B 32 332 118 HOH HOH . K 7 HOH B 33 333 124 HOH HOH . K 7 HOH B 34 334 127 HOH HOH . K 7 HOH B 35 335 130 HOH HOH . K 7 HOH B 36 336 136 HOH HOH . K 7 HOH B 37 337 142 HOH HOH . K 7 HOH B 38 338 145 HOH HOH . K 7 HOH B 39 339 146 HOH HOH . K 7 HOH B 40 340 147 HOH HOH . K 7 HOH B 41 341 148 HOH HOH . K 7 HOH B 42 342 149 HOH HOH . K 7 HOH B 43 343 155 HOH HOH . K 7 HOH B 44 344 160 HOH HOH . K 7 HOH B 45 345 165 HOH HOH . K 7 HOH B 46 346 167 HOH HOH . K 7 HOH B 47 347 170 HOH HOH . K 7 HOH B 48 348 175 HOH HOH . K 7 HOH B 49 349 176 HOH HOH . K 7 HOH B 50 350 177 HOH HOH . K 7 HOH B 51 351 180 HOH HOH . K 7 HOH B 52 352 195 HOH HOH . K 7 HOH B 53 353 196 HOH HOH . K 7 HOH B 54 354 202 HOH HOH . K 7 HOH B 55 355 205 HOH HOH . K 7 HOH B 56 356 211 HOH HOH . K 7 HOH B 57 357 212 HOH HOH . K 7 HOH B 58 358 216 HOH HOH . K 7 HOH B 59 359 218 HOH HOH . K 7 HOH B 60 360 221 HOH HOH . K 7 HOH B 61 361 227 HOH HOH . K 7 HOH B 62 362 229 HOH HOH . K 7 HOH B 63 363 231 HOH HOH . K 7 HOH B 64 364 232 HOH HOH . K 7 HOH B 65 365 234 HOH HOH . K 7 HOH B 66 366 235 HOH HOH . K 7 HOH B 67 367 240 HOH HOH . L 7 HOH C 1 301 4 HOH HOH . L 7 HOH C 2 302 6 HOH HOH . L 7 HOH C 3 303 12 HOH HOH . L 7 HOH C 4 304 14 HOH HOH . L 7 HOH C 5 305 16 HOH HOH . L 7 HOH C 6 306 21 HOH HOH . L 7 HOH C 7 307 24 HOH HOH . L 7 HOH C 8 308 50 HOH HOH . L 7 HOH C 9 309 52 HOH HOH . L 7 HOH C 10 310 80 HOH HOH . L 7 HOH C 11 311 91 HOH HOH . L 7 HOH C 12 312 94 HOH HOH . L 7 HOH C 13 313 95 HOH HOH . L 7 HOH C 14 314 96 HOH HOH . L 7 HOH C 15 315 97 HOH HOH . L 7 HOH C 16 316 102 HOH HOH . L 7 HOH C 17 317 106 HOH HOH . L 7 HOH C 18 318 107 HOH HOH . L 7 HOH C 19 319 113 HOH HOH . L 7 HOH C 20 320 119 HOH HOH . L 7 HOH C 21 321 126 HOH HOH . L 7 HOH C 22 322 128 HOH HOH . L 7 HOH C 23 323 129 HOH HOH . L 7 HOH C 24 324 133 HOH HOH . L 7 HOH C 25 325 134 HOH HOH . L 7 HOH C 26 326 150 HOH HOH . L 7 HOH C 27 327 156 HOH HOH . L 7 HOH C 28 328 161 HOH HOH . L 7 HOH C 29 329 163 HOH HOH . L 7 HOH C 30 330 168 HOH HOH . L 7 HOH C 31 331 169 HOH HOH . L 7 HOH C 32 332 171 HOH HOH . L 7 HOH C 33 333 179 HOH HOH . L 7 HOH C 34 334 185 HOH HOH . L 7 HOH C 35 335 188 HOH HOH . L 7 HOH C 36 336 190 HOH HOH . L 7 HOH C 37 337 192 HOH HOH . L 7 HOH C 38 338 194 HOH HOH . L 7 HOH C 39 339 198 HOH HOH . L 7 HOH C 40 340 199 HOH HOH . L 7 HOH C 41 341 201 HOH HOH . L 7 HOH C 42 342 206 HOH HOH . L 7 HOH C 43 343 214 HOH HOH . L 7 HOH C 44 344 215 HOH HOH . L 7 HOH C 45 345 220 HOH HOH . L 7 HOH C 46 346 230 HOH HOH . L 7 HOH C 47 347 237 HOH HOH . L 7 HOH C 48 348 238 HOH HOH . L 7 HOH C 49 349 241 HOH HOH . M 7 HOH P 1 401 59 HOH HOH . M 7 HOH P 2 402 65 HOH HOH . M 7 HOH P 3 403 116 HOH HOH . M 7 HOH P 4 404 207 HOH HOH . M 7 HOH P 5 405 213 HOH HOH . M 7 HOH P 6 406 219 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 65.239 _atom_site.Cartn_y 23.525 _atom_site.Cartn_z -9.706 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.41 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 704 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 167 _model_server_stats.parse_time_ms 129 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #