data_4LW6 # _model_server_result.job_id 0twQUwW2NLrN9PC8cbUwJQ _model_server_result.datetime_utc '2025-06-21 02:35:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lw6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":405}' # _entry.id 4LW6 # _exptl.entry_id 4LW6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 91.109 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-1,3-PROPANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LW6 _cell.length_a 81.943 _cell.length_b 81.943 _cell.length_c 133.053 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LW6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 XYP _pdbx_entity_branch_link.comp_id_2 XYP _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B XYP 1 B 1 XYP A 564 XYP 2 n B XYP 2 B 2 XYP A 563 XYP # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 231 A CYS 255 1_555 A SG CYS 286 A CYS 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 276 A CYS 300 1_555 A SG CYS 284 A CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 B O4 XYP . B XYP 1 1_555 B C1 XYP . B XYP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? metalc ? metalc1 A OD2 ASP 123 A ASP 147 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc2 A NE2 HIS 217 A HIS 241 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc3 A ND1 HIS 219 A HIS 243 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 C MN MN . A MN 401 1_555 D O1B UDP . A UDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 C MN MN . A MN 401 1_555 D O1A UDP . A UDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 C MN MN . A MN 401 1_555 F O HOH . A HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? # _chem_comp.formula 'C3 H9 N O2' _chem_comp.formula_weight 91.109 _chem_comp.id SEL _chem_comp.mon_nstd_flag n _chem_comp.name 2-AMINO-1,3-PROPANEDIOL _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms SERINOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SEL sing 277 n n N H SEL sing 278 n n N H2 SEL sing 279 n n CA CB SEL sing 280 n n CA C SEL sing 281 n n CA HA SEL sing 282 n n CB OG SEL sing 283 n n CB HB2 SEL sing 284 n n CB HB3 SEL sing 285 n n OG HG SEL sing 286 n n C OXT SEL sing 287 n n C H21 SEL sing 288 n n C H22 SEL sing 289 n n OXT HXT SEL sing 290 n n # _atom_sites.entry_id 4LW6 _atom_sites.fract_transf_matrix[1][1] 0.012204 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012204 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MN A 1 401 335 MN MN . D 4 UDP A 1 402 336 UDP UDP . E 5 SEL A 1 405 1 SEL SEL . F 6 HOH A 1 501 1 HOH HOH . F 6 HOH A 2 502 2 HOH HOH . F 6 HOH A 3 503 3 HOH HOH . F 6 HOH A 4 504 4 HOH HOH . F 6 HOH A 5 505 5 HOH HOH . F 6 HOH A 6 506 6 HOH HOH . F 6 HOH A 7 507 7 HOH HOH . F 6 HOH A 8 508 8 HOH HOH . F 6 HOH A 9 509 9 HOH HOH . F 6 HOH A 10 510 10 HOH HOH . F 6 HOH A 11 511 11 HOH HOH . F 6 HOH A 12 512 12 HOH HOH . F 6 HOH A 13 513 13 HOH HOH . F 6 HOH A 14 514 14 HOH HOH . F 6 HOH A 15 515 15 HOH HOH . F 6 HOH A 16 516 16 HOH HOH . F 6 HOH A 17 517 17 HOH HOH . F 6 HOH A 18 518 18 HOH HOH . F 6 HOH A 19 519 19 HOH HOH . F 6 HOH A 20 520 20 HOH HOH . F 6 HOH A 21 521 21 HOH HOH . F 6 HOH A 22 522 22 HOH HOH . F 6 HOH A 23 523 23 HOH HOH . F 6 HOH A 24 524 24 HOH HOH . F 6 HOH A 25 525 25 HOH HOH . F 6 HOH A 26 526 26 HOH HOH . F 6 HOH A 27 527 27 HOH HOH . F 6 HOH A 28 528 28 HOH HOH . F 6 HOH A 29 529 29 HOH HOH . F 6 HOH A 30 530 30 HOH HOH . F 6 HOH A 31 531 31 HOH HOH . F 6 HOH A 32 532 32 HOH HOH . F 6 HOH A 33 533 33 HOH HOH . F 6 HOH A 34 534 34 HOH HOH . F 6 HOH A 35 535 35 HOH HOH . F 6 HOH A 36 536 36 HOH HOH . F 6 HOH A 37 537 37 HOH HOH . F 6 HOH A 38 538 38 HOH HOH . F 6 HOH A 39 539 39 HOH HOH . F 6 HOH A 40 540 40 HOH HOH . F 6 HOH A 41 541 41 HOH HOH . F 6 HOH A 42 542 42 HOH HOH . F 6 HOH A 43 543 43 HOH HOH . F 6 HOH A 44 544 44 HOH HOH . F 6 HOH A 45 545 45 HOH HOH . F 6 HOH A 46 546 46 HOH HOH . F 6 HOH A 47 547 47 HOH HOH . F 6 HOH A 48 548 48 HOH HOH . F 6 HOH A 49 549 49 HOH HOH . F 6 HOH A 50 550 50 HOH HOH . F 6 HOH A 51 551 51 HOH HOH . F 6 HOH A 52 552 52 HOH HOH . F 6 HOH A 53 553 53 HOH HOH . F 6 HOH A 54 554 54 HOH HOH . F 6 HOH A 55 555 55 HOH HOH . F 6 HOH A 56 556 56 HOH HOH . F 6 HOH A 57 557 57 HOH HOH . F 6 HOH A 58 558 58 HOH HOH . F 6 HOH A 59 559 59 HOH HOH . F 6 HOH A 60 560 60 HOH HOH . F 6 HOH A 61 561 61 HOH HOH . F 6 HOH A 62 562 62 HOH HOH . F 6 HOH A 63 563 63 HOH HOH . F 6 HOH A 64 564 64 HOH HOH . F 6 HOH A 65 565 65 HOH HOH . F 6 HOH A 66 566 66 HOH HOH . F 6 HOH A 67 567 67 HOH HOH . F 6 HOH A 68 568 68 HOH HOH . F 6 HOH A 69 569 69 HOH HOH . F 6 HOH A 70 570 70 HOH HOH . F 6 HOH A 71 571 71 HOH HOH . F 6 HOH A 72 572 72 HOH HOH . F 6 HOH A 73 573 73 HOH HOH . F 6 HOH A 74 574 74 HOH HOH . F 6 HOH A 75 575 75 HOH HOH . F 6 HOH A 76 576 76 HOH HOH . F 6 HOH A 77 577 77 HOH HOH . F 6 HOH A 78 578 78 HOH HOH . F 6 HOH A 79 579 79 HOH HOH . F 6 HOH A 80 580 80 HOH HOH . F 6 HOH A 81 581 81 HOH HOH . F 6 HOH A 82 582 82 HOH HOH . F 6 HOH A 83 583 83 HOH HOH . F 6 HOH A 84 584 84 HOH HOH . F 6 HOH A 85 585 85 HOH HOH . F 6 HOH A 86 586 86 HOH HOH . F 6 HOH A 87 587 87 HOH HOH . F 6 HOH A 88 588 88 HOH HOH . F 6 HOH A 89 589 89 HOH HOH . F 6 HOH A 90 590 90 HOH HOH . F 6 HOH A 91 591 91 HOH HOH . F 6 HOH A 92 592 92 HOH HOH . F 6 HOH A 93 593 93 HOH HOH . F 6 HOH A 94 594 94 HOH HOH . F 6 HOH A 95 595 95 HOH HOH . F 6 HOH A 96 596 96 HOH HOH . F 6 HOH A 97 597 97 HOH HOH . F 6 HOH A 98 598 98 HOH HOH . F 6 HOH A 99 599 99 HOH HOH . F 6 HOH A 100 600 100 HOH HOH . F 6 HOH A 101 601 101 HOH HOH . F 6 HOH A 102 602 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SEL . . . E 5 23.128 27.802 18.022 1 56.96 ? N SEL 405 A 1 HETATM 2 C CA SEL . . . E 5 21.828 28.191 17.541 1 55.46 ? CA SEL 405 A 1 HETATM 3 C CB SEL . . . E 5 20.817 27.032 17.56 1 60.01 ? CB SEL 405 A 1 HETATM 4 O OG SEL . . . E 5 21.371 25.724 17.799 1 62.05 ? OG SEL 405 A 1 HETATM 5 C C SEL . . . E 5 21.942 28.94 16.212 1 57.09 ? C SEL 405 A 1 HETATM 6 O OXT SEL . . . E 5 22.227 30.318 16.448 1 45.49 ? OXT SEL 405 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #