data_4LWY # _model_server_result.job_id h7Y0s-9oA5QgzC3AdTnc6w _model_server_result.datetime_utc '2024-11-25 11:36:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"IA","auth_seq_id":407}' # _entry.id 4LWY # _exptl.entry_id 4LWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 594.993 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPEROIDENONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LWY _cell.length_a 140.04 _cell.length_b 140.04 _cell.length_c 184.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 16 _struct_asym.id IA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 134 H MET 134 1_555 P K K . H K 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc2 A O ALA 137 H ALA 137 1_555 P K K . H K 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc3 A O PHE 140 H PHE 140 1_555 P K K . H K 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc4 B NE2 HIS 191 L HIS 190 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B NE2 HIS 231 L HIS 230 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc6 C NE2 HIS 220 M HIS 219 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc7 C OE2 GLU 235 M GLU 234 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc8 C OE1 GLU 235 M GLU 234 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc9 C NE2 HIS 267 M HIS 266 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C41 H70 O2' _chem_comp.formula_weight 594.993 _chem_comp.id SPN _chem_comp.mon_nstd_flag . _chem_comp.name SPEROIDENONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMA O1 SPN sing 912 n n CMA HMA1 SPN sing 913 n n CMA HMA2 SPN sing 914 n n CMA HMA3 SPN sing 915 n n O1 C1 SPN sing 916 n n CM1 C1 SPN sing 917 n n CM1 HM11 SPN sing 918 n n CM1 HM12 SPN sing 919 n n CM1 HM13 SPN sing 920 n n CM2 C1 SPN sing 921 n n CM2 HM21 SPN sing 922 n n CM2 HM22 SPN sing 923 n n CM2 HM23 SPN sing 924 n n C1 C2 SPN sing 925 n n C2 O2 SPN doub 926 n n C2 C3 SPN sing 927 n n C3 C4 SPN sing 928 n n C3 H31 SPN sing 929 n n C3 H32 SPN sing 930 n n C4 C5 SPN doub 931 e n C4 H4 SPN sing 932 n n C5 CM3 SPN sing 933 n n C5 C6 SPN sing 934 n n CM3 HM31 SPN sing 935 n n CM3 HM32 SPN sing 936 n n CM3 HM33 SPN sing 937 n n C6 C7 SPN sing 938 n n C6 H61 SPN sing 939 n n C6 H62 SPN sing 940 n n C7 C8 SPN sing 941 n n C7 H71 SPN sing 942 n n C7 H72 SPN sing 943 n n C8 C9 SPN doub 944 e n C8 H8 SPN sing 945 n n C9 CM4 SPN sing 946 n n C9 C10 SPN sing 947 n n CM4 HM41 SPN sing 948 n n CM4 HM42 SPN sing 949 n n CM4 HM43 SPN sing 950 n n C10 C11 SPN sing 951 n n C10 H101 SPN sing 952 n n C10 H102 SPN sing 953 n n C11 C12 SPN sing 954 n n C11 H111 SPN sing 955 n n C11 H112 SPN sing 956 n n C12 C13 SPN doub 957 e n C12 H12 SPN sing 958 n n C13 CM5 SPN sing 959 n n C13 C14 SPN sing 960 n n CM5 HM51 SPN sing 961 n n CM5 HM52 SPN sing 962 n n CM5 HM53 SPN sing 963 n n C14 C15 SPN sing 964 n n C14 H141 SPN sing 965 n n C14 H142 SPN sing 966 n n C15 C16 SPN sing 967 n n C15 H151 SPN sing 968 n n C15 H152 SPN sing 969 n n C16 C17 SPN sing 970 n n C16 H161 SPN sing 971 n n C16 H162 SPN sing 972 n n C17 C18 SPN sing 973 n n C17 H171 SPN sing 974 n n C17 H172 SPN sing 975 n n C18 CM6 SPN sing 976 n n C18 C19 SPN doub 977 e n CM6 HM61 SPN sing 978 n n CM6 HM62 SPN sing 979 n n CM6 HM63 SPN sing 980 n n C19 C20 SPN sing 981 n n C19 H19 SPN sing 982 n n C20 C21 SPN sing 983 n n C20 H201 SPN sing 984 n n C20 H202 SPN sing 985 n n C21 C22 SPN sing 986 n n C21 H211 SPN sing 987 n n C21 H212 SPN sing 988 n n C22 CM7 SPN sing 989 n n C22 C23 SPN sing 990 n n C22 H22 SPN sing 991 n n CM7 HM71 SPN sing 992 n n CM7 HM72 SPN sing 993 n n CM7 HM73 SPN sing 994 n n C23 C24 SPN sing 995 n n C23 H231 SPN sing 996 n n C23 H232 SPN sing 997 n n C24 C25 SPN sing 998 n n C24 H241 SPN sing 999 n n C24 H242 SPN sing 1000 n n C25 C26 SPN doub 1001 e n C25 H25 SPN sing 1002 n n C26 CM8 SPN sing 1003 n n C26 C27 SPN sing 1004 n n CM8 HM81 SPN sing 1005 n n CM8 HM82 SPN sing 1006 n n CM8 HM83 SPN sing 1007 n n C27 C28 SPN sing 1008 n n C27 H271 SPN sing 1009 n n C27 H272 SPN sing 1010 n n C28 C29 SPN sing 1011 n n C28 H281 SPN sing 1012 n n C28 H282 SPN sing 1013 n n C29 C30 SPN doub 1014 n n C29 H29 SPN sing 1015 n n C30 CM9 SPN sing 1016 n n C30 CMB SPN sing 1017 n n CM9 HM91 SPN sing 1018 n n CM9 HM92 SPN sing 1019 n n CM9 HM93 SPN sing 1020 n n CMB HMB1 SPN sing 1021 n n CMB HMB2 SPN sing 1022 n n CMB HMB3 SPN sing 1023 n n # _atom_sites.entry_id 4LWY _atom_sites.fract_transf_matrix[1][1] 0.007141 _atom_sites.fract_transf_matrix[1][2] 0.004123 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 801 UNL UNL . F 5 UNL H 1 303 802 UNL UNL . G 5 UNL H 1 304 803 UNL UNL . H 5 UNL H 1 305 804 UNL UNL . I 6 PO4 H 1 306 1 PO4 PO4 . J 7 DIO H 1 307 42 DIO DIO . K 8 EDO H 1 308 45 EDO EDO . L 8 EDO H 1 309 51 EDO EDO . M 8 EDO H 1 310 56 EDO EDO . N 8 EDO H 1 311 59 EDO EDO . O 9 TRS H 1 312 70 TRS TRS . P 10 K H 1 313 104 K K . Q 11 BCL L 1 301 301 BCL BCL . R 11 BCL L 1 302 302 BCL BCL . S 12 BPH L 1 303 402 BPH BPH . T 13 U10 L 1 304 502 U10 U10 . U 5 UNL L 1 305 805 UNL UNL . V 5 UNL L 1 306 807 UNL UNL . W 5 UNL L 1 307 808 UNL UNL . X 5 UNL L 1 308 810 UNL UNL . Y 7 DIO L 1 309 41 DIO DIO . Z 7 DIO L 1 310 43 DIO DIO . AA 8 EDO L 1 311 49 EDO EDO . BA 9 TRS L 1 312 71 TRS TRS . CA 14 CDL M 1 401 900 CDL CDL . DA 12 BPH M 1 402 303 BPH BPH . EA 11 BCL M 1 403 304 BCL BCL . FA 12 BPH M 1 404 401 BPH BPH . GA 15 FE M 1 405 500 FE FE . HA 13 U10 M 1 406 501 U10 U10 . IA 16 SPN M 1 407 600 SPN SPN . JA 4 LDA M 1 408 701 LDA LDA . KA 4 LDA M 1 409 705 LDA LDA . LA 4 LDA M 1 410 708 LDA LDA . MA 4 LDA M 1 411 709 LDA LDA . NA 4 LDA M 1 412 710 LDA LDA . OA 5 UNL M 1 413 800 UNL UNL . PA 5 UNL M 1 414 806 UNL UNL . QA 5 UNL M 1 415 809 UNL UNL . RA 6 PO4 M 1 416 2 PO4 PO4 . SA 6 PO4 M 1 417 3 PO4 PO4 . TA 7 DIO M 1 418 40 DIO DIO . UA 8 EDO M 1 419 50 EDO EDO . VA 8 EDO M 1 420 53 EDO EDO . WA 17 HOH H 1 401 13 HOH HOH . WA 17 HOH H 2 402 15 HOH HOH . WA 17 HOH H 3 403 16 HOH HOH . WA 17 HOH H 4 404 18 HOH HOH . WA 17 HOH H 5 405 20 HOH HOH . WA 17 HOH H 6 406 26 HOH HOH . WA 17 HOH H 7 407 27 HOH HOH . WA 17 HOH H 8 408 28 HOH HOH . WA 17 HOH H 9 409 29 HOH HOH . WA 17 HOH H 10 410 30 HOH HOH . WA 17 HOH H 11 411 31 HOH HOH . XA 17 HOH L 1 401 2 HOH HOH . XA 17 HOH L 2 402 3 HOH HOH . XA 17 HOH L 3 403 4 HOH HOH . XA 17 HOH L 4 404 5 HOH HOH . XA 17 HOH L 5 405 6 HOH HOH . XA 17 HOH L 6 406 9 HOH HOH . XA 17 HOH L 7 407 11 HOH HOH . XA 17 HOH L 8 408 12 HOH HOH . XA 17 HOH L 9 409 17 HOH HOH . XA 17 HOH L 10 410 22 HOH HOH . YA 17 HOH M 1 501 1 HOH HOH . YA 17 HOH M 2 502 7 HOH HOH . YA 17 HOH M 3 503 8 HOH HOH . YA 17 HOH M 4 504 10 HOH HOH . YA 17 HOH M 5 505 14 HOH HOH . YA 17 HOH M 6 506 19 HOH HOH . YA 17 HOH M 7 507 21 HOH HOH . YA 17 HOH M 8 508 23 HOH HOH . YA 17 HOH M 9 509 24 HOH HOH . YA 17 HOH M 10 510 25 HOH HOH . YA 17 HOH M 11 511 32 HOH HOH . YA 17 HOH M 12 512 33 HOH HOH . YA 17 HOH M 13 513 34 HOH HOH . YA 17 HOH M 14 514 35 HOH HOH . YA 17 HOH M 15 515 36 HOH HOH . YA 17 HOH M 16 516 37 HOH HOH . YA 17 HOH M 17 517 38 HOH HOH . YA 17 HOH M 18 518 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CMA SPN . . . IA 16 -45.477 4.519 25.346 1 77.58 ? CMA SPN 407 M 1 HETATM 2 O O1 SPN . . . IA 16 -44.825 4.838 24.167 1 71.03 ? O1 SPN 407 M 1 HETATM 3 C CM1 SPN . . . IA 16 -42.807 3.568 24.264 1 70.63 ? CM1 SPN 407 M 1 HETATM 4 C CM2 SPN . . . IA 16 -44.726 2.8 22.94 1 68.34 ? CM2 SPN 407 M 1 HETATM 5 C C1 SPN . . . IA 16 -43.992 3.999 23.458 1 70.55 ? C1 SPN 407 M 1 HETATM 6 C C2 SPN . . . IA 16 -43.529 4.772 22.258 1 74.65 ? C2 SPN 407 M 1 HETATM 7 O O2 SPN . . . IA 16 -42.691 4.305 21.5 1 75.19 ? O2 SPN 407 M 1 HETATM 8 C C3 SPN . . . IA 16 -44.118 6.125 21.998 1 73.92 ? C3 SPN 407 M 1 HETATM 9 C C4 SPN . . . IA 16 -43.335 6.846 20.933 1 72.38 ? C4 SPN 407 M 1 HETATM 10 C C5 SPN . . . IA 16 -43.458 8.203 20.762 1 68.89 ? C5 SPN 407 M 1 HETATM 11 C CM3 SPN . . . IA 16 -44.671 8.918 21.274 1 61.11 ? CM3 SPN 407 M 1 HETATM 12 C C6 SPN . . . IA 16 -42.685 8.761 19.586 1 68.71 ? C6 SPN 407 M 1 HETATM 13 C C7 SPN . . . IA 16 -43.393 9.573 18.522 1 70.17 ? C7 SPN 407 M 1 HETATM 14 C C8 SPN . . . IA 16 -42.372 10.32 17.706 1 66.21 ? C8 SPN 407 M 1 HETATM 15 C C9 SPN . . . IA 16 -42.642 11.61 17.266 1 63.38 ? C9 SPN 407 M 1 HETATM 16 C CM4 SPN . . . IA 16 -43.68 12.423 17.978 1 55.89 ? CM4 SPN 407 M 1 HETATM 17 C C10 SPN . . . IA 16 -42.308 11.95 15.831 1 57.07 ? C10 SPN 407 M 1 HETATM 18 C C11 SPN . . . IA 16 -41.982 13.38 15.508 1 51.11 ? C11 SPN 407 M 1 HETATM 19 C C12 SPN . . . IA 16 -41.115 13.448 14.268 1 45.92 ? C12 SPN 407 M 1 HETATM 20 C C13 SPN . . . IA 16 -41.242 14.475 13.363 1 37.66 ? C13 SPN 407 M 1 HETATM 21 C CM5 SPN . . . IA 16 -42.276 15.529 13.561 1 30.97 ? CM5 SPN 407 M 1 HETATM 22 C C14 SPN . . . IA 16 -40.604 14.333 12.015 1 39.38 ? C14 SPN 407 M 1 HETATM 23 C C15 SPN . . . IA 16 -40.127 15.577 11.313 1 41.01 ? C15 SPN 407 M 1 HETATM 24 C C16 SPN . . . IA 16 -39.016 15.407 10.317 1 38.84 ? C16 SPN 407 M 1 HETATM 25 C C17 SPN . . . IA 16 -38.691 14.017 9.881 1 36.82 ? C17 SPN 407 M 1 HETATM 26 C C18 SPN . . . IA 16 -37.51 14.05 8.968 1 36.67 ? C18 SPN 407 M 1 HETATM 27 C CM6 SPN . . . IA 16 -37.394 15.147 7.96 1 39.51 ? CM6 SPN 407 M 1 HETATM 28 C C19 SPN . . . IA 16 -36.648 12.963 8.964 1 41.81 ? C19 SPN 407 M 1 HETATM 29 C C20 SPN . . . IA 16 -35.509 12.885 7.973 1 42.85 ? C20 SPN 407 M 1 HETATM 30 C C21 SPN . . . IA 16 -35.083 11.457 7.725 1 38.2 ? C21 SPN 407 M 1 HETATM 31 C C22 SPN . . . IA 16 -33.951 11.238 6.744 1 44.46 ? C22 SPN 407 M 1 HETATM 32 C CM7 SPN . . . IA 16 -34.393 11.327 5.316 1 45.31 ? CM7 SPN 407 M 1 HETATM 33 C C23 SPN . . . IA 16 -33.226 9.935 7.006 1 46.26 ? C23 SPN 407 M 1 HETATM 34 C C24 SPN . . . IA 16 -31.725 10.033 7.08 1 43.11 ? C24 SPN 407 M 1 HETATM 35 C C25 SPN . . . IA 16 -31.145 8.801 7.727 1 46.17 ? C25 SPN 407 M 1 HETATM 36 C C26 SPN . . . IA 16 -29.945 8.898 8.432 1 49.24 ? C26 SPN 407 M 1 HETATM 37 C CM8 SPN . . . IA 16 -29.426 10.245 8.814 1 52.23 ? CM8 SPN 407 M 1 HETATM 38 C C27 SPN . . . IA 16 -29.049 7.707 8.542 1 56.64 ? C27 SPN 407 M 1 HETATM 39 C C28 SPN . . . IA 16 -28.112 7.421 7.413 1 62.41 ? C28 SPN 407 M 1 HETATM 40 C C29 SPN . . . IA 16 -27.881 6 7.01 1 70.33 ? C29 SPN 407 M 1 HETATM 41 C C30 SPN . . . IA 16 -28.337 5.465 5.816 1 72.44 ? C30 SPN 407 M 1 HETATM 42 C CM9 SPN . . . IA 16 -29.547 5.962 5.114 1 52.3 ? CM9 SPN 407 M 1 HETATM 43 C CMB SPN . . . IA 16 -27.748 4.19 5.313 1 78.8 ? CMB SPN 407 M 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 43 #