data_4LWY # _model_server_result.job_id Miua5Labbx1RkUZhIggt_A _model_server_result.datetime_utc '2024-11-14 03:35:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":408}' # _entry.id 4LWY # _exptl.entry_id 4LWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LWY _cell.length_a 140.04 _cell.length_b 140.04 _cell.length_c 184.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 JA N N ? 4 KA N N ? 4 LA N N ? 4 MA N N ? 4 NA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 134 H MET 134 1_555 P K K . H K 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc2 A O ALA 137 H ALA 137 1_555 P K K . H K 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc3 A O PHE 140 H PHE 140 1_555 P K K . H K 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc4 B NE2 HIS 191 L HIS 190 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B NE2 HIS 231 L HIS 230 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc6 C NE2 HIS 220 M HIS 219 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc7 C OE2 GLU 235 M GLU 234 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc8 C OE1 GLU 235 M GLU 234 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc9 C NE2 HIS 267 M HIS 266 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 745 n n N1 CM1 LDA sing 746 n n N1 CM2 LDA sing 747 n n N1 C1 LDA sing 748 n n CM1 HM11 LDA sing 749 n n CM1 HM12 LDA sing 750 n n CM1 HM13 LDA sing 751 n n CM2 HM21 LDA sing 752 n n CM2 HM22 LDA sing 753 n n CM2 HM23 LDA sing 754 n n C1 C2 LDA sing 755 n n C1 H11 LDA sing 756 n n C1 H12 LDA sing 757 n n C2 C3 LDA sing 758 n n C2 H21 LDA sing 759 n n C2 H22 LDA sing 760 n n C3 C4 LDA sing 761 n n C3 H31 LDA sing 762 n n C3 H32 LDA sing 763 n n C4 C5 LDA sing 764 n n C4 H41 LDA sing 765 n n C4 H42 LDA sing 766 n n C5 C6 LDA sing 767 n n C5 H51 LDA sing 768 n n C5 H52 LDA sing 769 n n C6 C7 LDA sing 770 n n C6 H61 LDA sing 771 n n C6 H62 LDA sing 772 n n C7 C8 LDA sing 773 n n C7 H71 LDA sing 774 n n C7 H72 LDA sing 775 n n C8 C9 LDA sing 776 n n C8 H81 LDA sing 777 n n C8 H82 LDA sing 778 n n C9 C10 LDA sing 779 n n C9 H91 LDA sing 780 n n C9 H92 LDA sing 781 n n C10 C11 LDA sing 782 n n C10 H101 LDA sing 783 n n C10 H102 LDA sing 784 n n C11 C12 LDA sing 785 n n C11 H111 LDA sing 786 n n C11 H112 LDA sing 787 n n C12 H121 LDA sing 788 n n C12 H122 LDA sing 789 n n C12 H123 LDA sing 790 n n # _atom_sites.entry_id 4LWY _atom_sites.fract_transf_matrix[1][1] 0.007141 _atom_sites.fract_transf_matrix[1][2] 0.004123 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 801 UNL UNL . F 5 UNL H 1 303 802 UNL UNL . G 5 UNL H 1 304 803 UNL UNL . H 5 UNL H 1 305 804 UNL UNL . I 6 PO4 H 1 306 1 PO4 PO4 . J 7 DIO H 1 307 42 DIO DIO . K 8 EDO H 1 308 45 EDO EDO . L 8 EDO H 1 309 51 EDO EDO . M 8 EDO H 1 310 56 EDO EDO . N 8 EDO H 1 311 59 EDO EDO . O 9 TRS H 1 312 70 TRS TRS . P 10 K H 1 313 104 K K . Q 11 BCL L 1 301 301 BCL BCL . R 11 BCL L 1 302 302 BCL BCL . S 12 BPH L 1 303 402 BPH BPH . T 13 U10 L 1 304 502 U10 U10 . U 5 UNL L 1 305 805 UNL UNL . V 5 UNL L 1 306 807 UNL UNL . W 5 UNL L 1 307 808 UNL UNL . X 5 UNL L 1 308 810 UNL UNL . Y 7 DIO L 1 309 41 DIO DIO . Z 7 DIO L 1 310 43 DIO DIO . AA 8 EDO L 1 311 49 EDO EDO . BA 9 TRS L 1 312 71 TRS TRS . CA 14 CDL M 1 401 900 CDL CDL . DA 12 BPH M 1 402 303 BPH BPH . EA 11 BCL M 1 403 304 BCL BCL . FA 12 BPH M 1 404 401 BPH BPH . GA 15 FE M 1 405 500 FE FE . HA 13 U10 M 1 406 501 U10 U10 . IA 16 SPN M 1 407 600 SPN SPN . JA 4 LDA M 1 408 701 LDA LDA . KA 4 LDA M 1 409 705 LDA LDA . LA 4 LDA M 1 410 708 LDA LDA . MA 4 LDA M 1 411 709 LDA LDA . NA 4 LDA M 1 412 710 LDA LDA . OA 5 UNL M 1 413 800 UNL UNL . PA 5 UNL M 1 414 806 UNL UNL . QA 5 UNL M 1 415 809 UNL UNL . RA 6 PO4 M 1 416 2 PO4 PO4 . SA 6 PO4 M 1 417 3 PO4 PO4 . TA 7 DIO M 1 418 40 DIO DIO . UA 8 EDO M 1 419 50 EDO EDO . VA 8 EDO M 1 420 53 EDO EDO . WA 17 HOH H 1 401 13 HOH HOH . WA 17 HOH H 2 402 15 HOH HOH . WA 17 HOH H 3 403 16 HOH HOH . WA 17 HOH H 4 404 18 HOH HOH . WA 17 HOH H 5 405 20 HOH HOH . WA 17 HOH H 6 406 26 HOH HOH . WA 17 HOH H 7 407 27 HOH HOH . WA 17 HOH H 8 408 28 HOH HOH . WA 17 HOH H 9 409 29 HOH HOH . WA 17 HOH H 10 410 30 HOH HOH . WA 17 HOH H 11 411 31 HOH HOH . XA 17 HOH L 1 401 2 HOH HOH . XA 17 HOH L 2 402 3 HOH HOH . XA 17 HOH L 3 403 4 HOH HOH . XA 17 HOH L 4 404 5 HOH HOH . XA 17 HOH L 5 405 6 HOH HOH . XA 17 HOH L 6 406 9 HOH HOH . XA 17 HOH L 7 407 11 HOH HOH . XA 17 HOH L 8 408 12 HOH HOH . XA 17 HOH L 9 409 17 HOH HOH . XA 17 HOH L 10 410 22 HOH HOH . YA 17 HOH M 1 501 1 HOH HOH . YA 17 HOH M 2 502 7 HOH HOH . YA 17 HOH M 3 503 8 HOH HOH . YA 17 HOH M 4 504 10 HOH HOH . YA 17 HOH M 5 505 14 HOH HOH . YA 17 HOH M 6 506 19 HOH HOH . YA 17 HOH M 7 507 21 HOH HOH . YA 17 HOH M 8 508 23 HOH HOH . YA 17 HOH M 9 509 24 HOH HOH . YA 17 HOH M 10 510 25 HOH HOH . YA 17 HOH M 11 511 32 HOH HOH . YA 17 HOH M 12 512 33 HOH HOH . YA 17 HOH M 13 513 34 HOH HOH . YA 17 HOH M 14 514 35 HOH HOH . YA 17 HOH M 15 515 36 HOH HOH . YA 17 HOH M 16 516 37 HOH HOH . YA 17 HOH M 17 517 38 HOH HOH . YA 17 HOH M 18 518 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . JA 4 -43.399 33.776 -6.682 1 55.01 ? N1 LDA 408 M 1 HETATM 2 O O1 LDA . . . JA 4 -43.323 34.827 -7.355 1 60.37 ? O1 LDA 408 M 1 HETATM 3 C CM1 LDA . . . JA 4 -42.639 32.718 -7.365 1 53.21 ? CM1 LDA 408 M 1 HETATM 4 C CM2 LDA . . . JA 4 -42.788 34.035 -5.367 1 57.77 ? CM2 LDA 408 M 1 HETATM 5 C C1 LDA . . . JA 4 -44.789 33.387 -6.463 1 52 ? C1 LDA 408 M 1 HETATM 6 C C2 LDA . . . JA 4 -45.477 33.202 -7.814 1 56.93 ? C2 LDA 408 M 1 HETATM 7 C C3 LDA . . . JA 4 -46.943 32.792 -7.667 1 49.27 ? C3 LDA 408 M 1 HETATM 8 C C4 LDA . . . JA 4 -47.45 32.148 -8.955 1 58.63 ? C4 LDA 408 M 1 HETATM 9 C C5 LDA . . . JA 4 -48.677 31.268 -8.725 1 64.71 ? C5 LDA 408 M 1 HETATM 10 C C6 LDA . . . JA 4 -49.109 30.55 -10.002 1 58.67 ? C6 LDA 408 M 1 HETATM 11 C C7 LDA . . . JA 4 -49.854 29.241 -9.729 1 62.18 ? C7 LDA 408 M 1 HETATM 12 C C8 LDA . . . JA 4 -49.794 28.325 -10.955 1 66.78 ? C8 LDA 408 M 1 HETATM 13 C C9 LDA . . . JA 4 -50.851 27.219 -10.981 1 52.55 ? C9 LDA 408 M 1 HETATM 14 C C10 LDA . . . JA 4 -50.424 26.048 -11.866 1 46.17 ? C10 LDA 408 M 1 HETATM 15 C C11 LDA . . . JA 4 -51.427 24.901 -11.787 1 46.52 ? C11 LDA 408 M 1 HETATM 16 C C12 LDA . . . JA 4 -50.788 23.533 -12.017 1 45.85 ? C12 LDA 408 M 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 16 #