data_4LWY # _model_server_result.job_id 58vXZTQoEU0K-Ku9yr1cQg _model_server_result.datetime_utc '2024-11-29 02:24:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lwy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"TA","auth_seq_id":418}' # _entry.id 4LWY # _exptl.entry_id 4LWY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LWY _cell.length_a 140.04 _cell.length_b 140.04 _cell.length_c 184.62 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LWY _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 Y N N ? 7 Z N N ? 7 TA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 134 H MET 134 1_555 P K K . H K 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc2 A O ALA 137 H ALA 137 1_555 P K K . H K 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc3 A O PHE 140 H PHE 140 1_555 P K K . H K 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.034 ? metalc ? metalc4 B NE2 HIS 191 L HIS 190 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 B NE2 HIS 231 L HIS 230 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc6 C NE2 HIS 220 M HIS 219 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc7 C OE2 GLU 235 M GLU 234 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc8 C OE1 GLU 235 M GLU 234 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc9 C NE2 HIS 267 M HIS 266 1_555 GA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 632 n n C1 O1 DIO sing 633 n n C1 H11 DIO sing 634 n n C1 H12 DIO sing 635 n n C2 C2' DIO sing 636 n n C2 O1 DIO sing 637 n n C2 H21 DIO sing 638 n n C2 H22 DIO sing 639 n n C1' O1' DIO sing 640 n n C1' "H1'1" DIO sing 641 n n C1' "H1'2" DIO sing 642 n n C2' O1' DIO sing 643 n n C2' "H2'1" DIO sing 644 n n C2' "H2'2" DIO sing 645 n n # _atom_sites.entry_id 4LWY _atom_sites.fract_transf_matrix[1][1] 0.007141 _atom_sites.fract_transf_matrix[1][2] 0.004123 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008246 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 801 UNL UNL . F 5 UNL H 1 303 802 UNL UNL . G 5 UNL H 1 304 803 UNL UNL . H 5 UNL H 1 305 804 UNL UNL . I 6 PO4 H 1 306 1 PO4 PO4 . J 7 DIO H 1 307 42 DIO DIO . K 8 EDO H 1 308 45 EDO EDO . L 8 EDO H 1 309 51 EDO EDO . M 8 EDO H 1 310 56 EDO EDO . N 8 EDO H 1 311 59 EDO EDO . O 9 TRS H 1 312 70 TRS TRS . P 10 K H 1 313 104 K K . Q 11 BCL L 1 301 301 BCL BCL . R 11 BCL L 1 302 302 BCL BCL . S 12 BPH L 1 303 402 BPH BPH . T 13 U10 L 1 304 502 U10 U10 . U 5 UNL L 1 305 805 UNL UNL . V 5 UNL L 1 306 807 UNL UNL . W 5 UNL L 1 307 808 UNL UNL . X 5 UNL L 1 308 810 UNL UNL . Y 7 DIO L 1 309 41 DIO DIO . Z 7 DIO L 1 310 43 DIO DIO . AA 8 EDO L 1 311 49 EDO EDO . BA 9 TRS L 1 312 71 TRS TRS . CA 14 CDL M 1 401 900 CDL CDL . DA 12 BPH M 1 402 303 BPH BPH . EA 11 BCL M 1 403 304 BCL BCL . FA 12 BPH M 1 404 401 BPH BPH . GA 15 FE M 1 405 500 FE FE . HA 13 U10 M 1 406 501 U10 U10 . IA 16 SPN M 1 407 600 SPN SPN . JA 4 LDA M 1 408 701 LDA LDA . KA 4 LDA M 1 409 705 LDA LDA . LA 4 LDA M 1 410 708 LDA LDA . MA 4 LDA M 1 411 709 LDA LDA . NA 4 LDA M 1 412 710 LDA LDA . OA 5 UNL M 1 413 800 UNL UNL . PA 5 UNL M 1 414 806 UNL UNL . QA 5 UNL M 1 415 809 UNL UNL . RA 6 PO4 M 1 416 2 PO4 PO4 . SA 6 PO4 M 1 417 3 PO4 PO4 . TA 7 DIO M 1 418 40 DIO DIO . UA 8 EDO M 1 419 50 EDO EDO . VA 8 EDO M 1 420 53 EDO EDO . WA 17 HOH H 1 401 13 HOH HOH . WA 17 HOH H 2 402 15 HOH HOH . WA 17 HOH H 3 403 16 HOH HOH . WA 17 HOH H 4 404 18 HOH HOH . WA 17 HOH H 5 405 20 HOH HOH . WA 17 HOH H 6 406 26 HOH HOH . WA 17 HOH H 7 407 27 HOH HOH . WA 17 HOH H 8 408 28 HOH HOH . WA 17 HOH H 9 409 29 HOH HOH . WA 17 HOH H 10 410 30 HOH HOH . WA 17 HOH H 11 411 31 HOH HOH . XA 17 HOH L 1 401 2 HOH HOH . XA 17 HOH L 2 402 3 HOH HOH . XA 17 HOH L 3 403 4 HOH HOH . XA 17 HOH L 4 404 5 HOH HOH . XA 17 HOH L 5 405 6 HOH HOH . XA 17 HOH L 6 406 9 HOH HOH . XA 17 HOH L 7 407 11 HOH HOH . XA 17 HOH L 8 408 12 HOH HOH . XA 17 HOH L 9 409 17 HOH HOH . XA 17 HOH L 10 410 22 HOH HOH . YA 17 HOH M 1 501 1 HOH HOH . YA 17 HOH M 2 502 7 HOH HOH . YA 17 HOH M 3 503 8 HOH HOH . YA 17 HOH M 4 504 10 HOH HOH . YA 17 HOH M 5 505 14 HOH HOH . YA 17 HOH M 6 506 19 HOH HOH . YA 17 HOH M 7 507 21 HOH HOH . YA 17 HOH M 8 508 23 HOH HOH . YA 17 HOH M 9 509 24 HOH HOH . YA 17 HOH M 10 510 25 HOH HOH . YA 17 HOH M 11 511 32 HOH HOH . YA 17 HOH M 12 512 33 HOH HOH . YA 17 HOH M 13 513 34 HOH HOH . YA 17 HOH M 14 514 35 HOH HOH . YA 17 HOH M 15 515 36 HOH HOH . YA 17 HOH M 16 516 37 HOH HOH . YA 17 HOH M 17 517 38 HOH HOH . YA 17 HOH M 18 518 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . TA 7 -51.619 18.229 24.968 1 102.52 ? C1 DIO 418 M 1 HETATM 2 C C2 DIO . . . TA 7 -51.493 15.922 24.616 1 99.04 ? C2 DIO 418 M 1 HETATM 3 C C1' DIO . . . TA 7 -53.032 18.164 24.486 1 105.21 ? C1' DIO 418 M 1 HETATM 4 C C2' DIO . . . TA 7 -52.805 15.947 23.897 1 105.75 ? C2' DIO 418 M 1 HETATM 5 O O1 DIO . . . TA 7 -50.85 17.143 24.585 1 104.36 ? O1 DIO 418 M 1 HETATM 6 O O1' DIO . . . TA 7 -53.175 17.216 23.495 1 112.02 ? O1' DIO 418 M 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #