data_4LY9 # _model_server_result.job_id 0AXFJMTOpfWVIQ7KcyDOzw _model_server_result.datetime_utc '2024-11-23 04:38:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ly9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":713}' # _entry.id 4LY9 # _exptl.entry_id 4LY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 262.152 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description D-SORBITOL-6-PHOSPHATE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LY9 _cell.length_a 148.869 _cell.length_b 148.869 _cell.length_c 132.397 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,KA 1 1 B,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,LA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 O N N ? 3 FA N N # _chem_comp.formula 'C6 H15 O9 P' _chem_comp.formula_weight 262.152 _chem_comp.id S6P _chem_comp.mon_nstd_flag . _chem_comp.name D-SORBITOL-6-PHOSPHATE _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 1-O-PHOSPHONO-D-GLUCITOL;D-GLUCITOL-6-PHOSPHATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 S6P sing 358 n n C1 O1 S6P sing 359 n n C1 H11 S6P sing 360 n n C1 H12 S6P sing 361 n n C2 C3 S6P sing 362 n n C2 O2 S6P sing 363 n n C2 H2 S6P sing 364 n n C3 C4 S6P sing 365 n n C3 O3 S6P sing 366 n n C3 H3 S6P sing 367 n n C4 C5 S6P sing 368 n n C4 O4 S6P sing 369 n n C4 H4 S6P sing 370 n n C5 C6 S6P sing 371 n n C5 O5 S6P sing 372 n n C5 H5 S6P sing 373 n n C6 O6 S6P sing 374 n n C6 H61 S6P sing 375 n n C6 H62 S6P sing 376 n n O1 HO1 S6P sing 377 n n O2 HO2 S6P sing 378 n n O3 HO3 S6P sing 379 n n O4 HO4 S6P sing 380 n n O5 HO5 S6P sing 381 n n O6 P S6P sing 382 n n P O1P S6P sing 383 n n P O2P S6P sing 384 n n P O3P S6P doub 385 n n O1P H1P S6P sing 386 n n O2P H2P S6P sing 387 n n # _atom_sites.entry_id 4LY9 _atom_sites.fract_transf_matrix[1][1] 0.006717 _atom_sites.fract_transf_matrix[1][2] 0.003878 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 701 5 IOD IOD . D 2 IOD A 1 702 6 IOD IOD . E 2 IOD A 1 703 7 IOD IOD . F 2 IOD A 1 704 9 IOD IOD . G 2 IOD A 1 705 10 IOD IOD . H 2 IOD A 1 706 12 IOD IOD . I 2 IOD A 1 707 14 IOD IOD . J 2 IOD A 1 708 17 IOD IOD . K 2 IOD A 1 709 21 IOD IOD . L 2 IOD A 1 710 24 IOD IOD . M 2 IOD A 1 711 26 IOD IOD . N 2 IOD A 1 712 28 IOD IOD . O 3 S6P A 1 713 1 S6P S6P . P 4 1YY A 1 714 1 1YY UNL . Q 5 GOL A 1 715 2 GOL GOL . R 2 IOD B 1 701 1 IOD IOD . S 2 IOD B 1 702 2 IOD IOD . T 2 IOD B 1 703 3 IOD IOD . U 2 IOD B 1 704 4 IOD IOD . V 2 IOD B 1 705 8 IOD IOD . W 2 IOD B 1 706 11 IOD IOD . X 2 IOD B 1 707 13 IOD IOD . Y 2 IOD B 1 708 15 IOD IOD . Z 2 IOD B 1 709 16 IOD IOD . AA 2 IOD B 1 710 20 IOD IOD . BA 2 IOD B 1 711 22 IOD IOD . CA 2 IOD B 1 712 23 IOD IOD . DA 2 IOD B 1 713 25 IOD IOD . EA 2 IOD B 1 714 27 IOD IOD . FA 3 S6P B 1 715 1 S6P S6P . GA 4 1YY B 1 716 1 1YY UNL . HA 5 GOL B 1 717 1 GOL GOL . IA 6 SO4 B 1 718 1 SO4 SO4 . JA 6 SO4 B 1 719 2 SO4 SO4 . KA 7 HOH A 1 801 3 HOH HOH . KA 7 HOH A 2 802 5 HOH HOH . KA 7 HOH A 3 803 6 HOH HOH . KA 7 HOH A 4 804 9 HOH HOH . KA 7 HOH A 5 805 11 HOH HOH . KA 7 HOH A 6 806 12 HOH HOH . KA 7 HOH A 7 807 17 HOH HOH . KA 7 HOH A 8 808 20 HOH HOH . KA 7 HOH A 9 809 21 HOH HOH . KA 7 HOH A 10 810 23 HOH HOH . KA 7 HOH A 11 811 24 HOH HOH . KA 7 HOH A 12 812 25 HOH HOH . KA 7 HOH A 13 813 27 HOH HOH . KA 7 HOH A 14 814 34 HOH HOH . KA 7 HOH A 15 815 36 HOH HOH . KA 7 HOH A 16 816 38 HOH HOH . KA 7 HOH A 17 817 42 HOH HOH . KA 7 HOH A 18 818 43 HOH HOH . KA 7 HOH A 19 819 45 HOH HOH . KA 7 HOH A 20 820 49 HOH HOH . KA 7 HOH A 21 821 51 HOH HOH . KA 7 HOH A 22 822 53 HOH HOH . KA 7 HOH A 23 823 57 HOH HOH . KA 7 HOH A 24 824 58 HOH HOH . KA 7 HOH A 25 825 59 HOH HOH . KA 7 HOH A 26 826 60 HOH HOH . KA 7 HOH A 27 827 65 HOH HOH . KA 7 HOH A 28 828 68 HOH HOH . KA 7 HOH A 29 829 70 HOH HOH . KA 7 HOH A 30 830 72 HOH HOH . KA 7 HOH A 31 831 73 HOH HOH . KA 7 HOH A 32 832 74 HOH HOH . KA 7 HOH A 33 833 77 HOH HOH . KA 7 HOH A 34 834 78 HOH HOH . KA 7 HOH A 35 835 80 HOH HOH . KA 7 HOH A 36 836 82 HOH HOH . KA 7 HOH A 37 837 83 HOH HOH . KA 7 HOH A 38 838 87 HOH HOH . KA 7 HOH A 39 839 89 HOH HOH . KA 7 HOH A 40 840 93 HOH HOH . KA 7 HOH A 41 841 102 HOH HOH . KA 7 HOH A 42 842 110 HOH HOH . KA 7 HOH A 43 843 113 HOH HOH . KA 7 HOH A 44 844 114 HOH HOH . KA 7 HOH A 45 845 115 HOH HOH . KA 7 HOH A 46 846 121 HOH HOH . KA 7 HOH A 47 847 129 HOH HOH . KA 7 HOH A 48 848 142 HOH HOH . KA 7 HOH A 49 849 143 HOH HOH . KA 7 HOH A 50 850 144 HOH HOH . KA 7 HOH A 51 851 145 HOH HOH . KA 7 HOH A 52 852 151 HOH HOH . KA 7 HOH A 53 853 152 HOH HOH . KA 7 HOH A 54 854 153 HOH HOH . KA 7 HOH A 55 855 165 HOH HOH . KA 7 HOH A 56 856 166 HOH HOH . LA 7 HOH B 1 801 4 HOH HOH . LA 7 HOH B 2 802 7 HOH HOH . LA 7 HOH B 3 803 8 HOH HOH . LA 7 HOH B 4 804 10 HOH HOH . LA 7 HOH B 5 805 13 HOH HOH . LA 7 HOH B 6 806 14 HOH HOH . LA 7 HOH B 7 807 15 HOH HOH . LA 7 HOH B 8 808 16 HOH HOH . LA 7 HOH B 9 809 18 HOH HOH . LA 7 HOH B 10 810 19 HOH HOH . LA 7 HOH B 11 811 26 HOH HOH . LA 7 HOH B 12 812 28 HOH HOH . LA 7 HOH B 13 813 29 HOH HOH . LA 7 HOH B 14 814 31 HOH HOH . LA 7 HOH B 15 815 32 HOH HOH . LA 7 HOH B 16 816 33 HOH HOH . LA 7 HOH B 17 817 35 HOH HOH . LA 7 HOH B 18 818 37 HOH HOH . LA 7 HOH B 19 819 39 HOH HOH . LA 7 HOH B 20 820 40 HOH HOH . LA 7 HOH B 21 821 44 HOH HOH . LA 7 HOH B 22 822 46 HOH HOH . LA 7 HOH B 23 823 48 HOH HOH . LA 7 HOH B 24 824 50 HOH HOH . LA 7 HOH B 25 825 52 HOH HOH . LA 7 HOH B 26 826 54 HOH HOH . LA 7 HOH B 27 827 56 HOH HOH . LA 7 HOH B 28 828 61 HOH HOH . LA 7 HOH B 29 829 64 HOH HOH . LA 7 HOH B 30 830 66 HOH HOH . LA 7 HOH B 31 831 69 HOH HOH . LA 7 HOH B 32 832 71 HOH HOH . LA 7 HOH B 33 833 75 HOH HOH . LA 7 HOH B 34 834 76 HOH HOH . LA 7 HOH B 35 835 79 HOH HOH . LA 7 HOH B 36 836 81 HOH HOH . LA 7 HOH B 37 837 84 HOH HOH . LA 7 HOH B 38 838 85 HOH HOH . LA 7 HOH B 39 839 88 HOH HOH . LA 7 HOH B 40 840 91 HOH HOH . LA 7 HOH B 41 841 92 HOH HOH . LA 7 HOH B 42 842 94 HOH HOH . LA 7 HOH B 43 843 96 HOH HOH . LA 7 HOH B 44 844 97 HOH HOH . LA 7 HOH B 45 845 99 HOH HOH . LA 7 HOH B 46 846 100 HOH HOH . LA 7 HOH B 47 847 101 HOH HOH . LA 7 HOH B 48 848 103 HOH HOH . LA 7 HOH B 49 849 105 HOH HOH . LA 7 HOH B 50 850 107 HOH HOH . LA 7 HOH B 51 851 108 HOH HOH . LA 7 HOH B 52 852 109 HOH HOH . LA 7 HOH B 53 853 111 HOH HOH . LA 7 HOH B 54 854 112 HOH HOH . LA 7 HOH B 55 855 122 HOH HOH . LA 7 HOH B 56 856 123 HOH HOH . LA 7 HOH B 57 857 124 HOH HOH . LA 7 HOH B 58 858 125 HOH HOH . LA 7 HOH B 59 859 126 HOH HOH . LA 7 HOH B 60 860 127 HOH HOH . LA 7 HOH B 61 861 128 HOH HOH . LA 7 HOH B 62 862 130 HOH HOH . LA 7 HOH B 63 863 131 HOH HOH . LA 7 HOH B 64 864 132 HOH HOH . LA 7 HOH B 65 865 133 HOH HOH . LA 7 HOH B 66 866 134 HOH HOH . LA 7 HOH B 67 867 135 HOH HOH . LA 7 HOH B 68 868 136 HOH HOH . LA 7 HOH B 69 869 138 HOH HOH . LA 7 HOH B 70 870 139 HOH HOH . LA 7 HOH B 71 871 140 HOH HOH . LA 7 HOH B 72 872 141 HOH HOH . LA 7 HOH B 73 873 154 HOH HOH . LA 7 HOH B 74 874 155 HOH HOH . LA 7 HOH B 75 875 156 HOH HOH . LA 7 HOH B 76 876 157 HOH HOH . LA 7 HOH B 77 877 158 HOH HOH . LA 7 HOH B 78 878 159 HOH HOH . LA 7 HOH B 79 879 160 HOH HOH . LA 7 HOH B 80 880 161 HOH HOH . LA 7 HOH B 81 881 162 HOH HOH . LA 7 HOH B 82 882 163 HOH HOH . LA 7 HOH B 83 883 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 S6P . . . O 3 45.832 -29.957 25.201 1 31.71 ? C1 S6P 713 A 1 HETATM 2 C C2 S6P . . . O 3 47.27 -30.371 25.233 1 28.57 ? C2 S6P 713 A 1 HETATM 3 C C3 S6P . . . O 3 47.705 -30.603 23.848 1 29.8 ? C3 S6P 713 A 1 HETATM 4 C C4 S6P . . . O 3 46.982 -31.765 23.16 1 29.99 ? C4 S6P 713 A 1 HETATM 5 C C5 S6P . . . O 3 47.606 -32.005 21.788 1 26.89 ? C5 S6P 713 A 1 HETATM 6 C C6 S6P . . . O 3 46.867 -33.034 20.95 1 27 ? C6 S6P 713 A 1 HETATM 7 O O1 S6P . . . O 3 45.446 -29.536 26.515 1 28.19 ? O1 S6P 713 A 1 HETATM 8 O O2 S6P . . . O 3 47.989 -29.235 25.741 1 28.48 ? O2 S6P 713 A 1 HETATM 9 O O3 S6P . . . O 3 49.087 -30.882 23.871 1 27.54 ? O3 S6P 713 A 1 HETATM 10 O O4 S6P . . . O 3 47.05 -32.964 23.952 1 30.86 ? O4 S6P 713 A 1 HETATM 11 O O5 S6P . . . O 3 47.585 -30.771 21.049 1 26.19 ? O5 S6P 713 A 1 HETATM 12 O O6 S6P . . . O 3 45.477 -32.795 20.911 1 25.85 ? O6 S6P 713 A 1 HETATM 13 P P S6P . . . O 3 44.658 -33.829 20.112 1 26.53 ? P S6P 713 A 1 HETATM 14 O O1P S6P . . . O 3 43.326 -33.192 19.899 1 27.55 ? O1P S6P 713 A 1 HETATM 15 O O2P S6P . . . O 3 44.675 -35.147 20.919 1 24.37 ? O2P S6P 713 A 1 HETATM 16 O O3P S6P . . . O 3 45.335 -34.303 18.762 1 24.24 ? O3P S6P 713 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #