data_4LY9 # _model_server_result.job_id 2naRFKGYfESA5GOytPrYPw _model_server_result.datetime_utc '2024-11-08 14:35:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ly9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":714}' # _entry.id 4LY9 # _exptl.entry_id 4LY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 533.627 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2R)-1,1,1-trifluoro-2-{4-[(2S)-2-{[(3S)-3-methylmorpholin-4-yl]methyl}-4-(thiophen-2-ylsulfonyl)piperazin-1-yl]phenyl}propan-2-ol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LY9 _cell.length_a 148.869 _cell.length_b 148.869 _cell.length_c 132.397 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,KA 1 1 B,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,LA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 P N N ? 4 GA N N # _chem_comp.formula 'C23 H30 F3 N3 O4 S2' _chem_comp.formula_weight 533.627 _chem_comp.id 1YY _chem_comp.mon_nstd_flag . _chem_comp.name (2R)-1,1,1-trifluoro-2-{4-[(2S)-2-{[(3S)-3-methylmorpholin-4-yl]methyl}-4-(thiophen-2-ylsulfonyl)piperazin-1-yl]phenyl}propan-2-ol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 O4 1YY sing 1 n n C19 C18 1YY sing 2 n n O4 C20 1YY sing 3 n n C18 N3 1YY sing 4 n n O2 S1 1YY doub 5 n n C20 C21 1YY sing 6 n n C22 C21 1YY sing 7 n n C21 N3 1YY sing 8 n n N3 C5 1YY sing 9 n n C7 C6 1YY doub 10 n y C7 C8 1YY sing 11 n y S1 O1 1YY doub 12 n n S1 C6 1YY sing 13 n n S1 N1 1YY sing 14 n n C6 S2 1YY sing 15 n y C8 C9 1YY doub 16 n y C5 C3 1YY sing 17 n n N1 C2 1YY sing 18 n n N1 C1 1YY sing 19 n n C2 C3 1YY sing 20 n n C3 N2 1YY sing 21 n n C9 S2 1YY sing 22 n y C1 C4 1YY sing 23 n n N2 C4 1YY sing 24 n n N2 C10 1YY sing 25 n n C11 C10 1YY doub 26 n y C11 C12 1YY sing 27 n y C10 C15 1YY sing 28 n y C12 C13 1YY doub 29 n y C15 C14 1YY doub 30 n y C13 C14 1YY sing 31 n y C13 C16 1YY sing 32 n n O3 C16 1YY sing 33 n n C16 C17 1YY sing 34 n n C16 C23 1YY sing 35 n n F1 C23 1YY sing 36 n n C23 F2 1YY sing 37 n n C23 F3 1YY sing 38 n n C22 H1 1YY sing 39 n n C22 H2 1YY sing 40 n n C22 H3 1YY sing 41 n n C21 H4 1YY sing 42 n n C20 H5 1YY sing 43 n n C20 H6 1YY sing 44 n n C19 H7 1YY sing 45 n n C19 H8 1YY sing 46 n n C18 H9 1YY sing 47 n n C18 H10 1YY sing 48 n n C5 H12 1YY sing 49 n n C5 H13 1YY sing 50 n n C3 H14 1YY sing 51 n n C2 H15 1YY sing 52 n n C2 H16 1YY sing 53 n n C7 H17 1YY sing 54 n n C8 H18 1YY sing 55 n n C9 H19 1YY sing 56 n n C1 H20 1YY sing 57 n n C1 H21 1YY sing 58 n n C4 H22 1YY sing 59 n n C4 H23 1YY sing 60 n n C15 H24 1YY sing 61 n n C14 H25 1YY sing 62 n n C11 H26 1YY sing 63 n n C12 H27 1YY sing 64 n n C17 H28 1YY sing 65 n n C17 H29 1YY sing 66 n n C17 H30 1YY sing 67 n n O3 H31 1YY sing 68 n n # _atom_sites.entry_id 4LY9 _atom_sites.fract_transf_matrix[1][1] 0.006717 _atom_sites.fract_transf_matrix[1][2] 0.003878 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007756 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007553 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IOD A 1 701 5 IOD IOD . D 2 IOD A 1 702 6 IOD IOD . E 2 IOD A 1 703 7 IOD IOD . F 2 IOD A 1 704 9 IOD IOD . G 2 IOD A 1 705 10 IOD IOD . H 2 IOD A 1 706 12 IOD IOD . I 2 IOD A 1 707 14 IOD IOD . J 2 IOD A 1 708 17 IOD IOD . K 2 IOD A 1 709 21 IOD IOD . L 2 IOD A 1 710 24 IOD IOD . M 2 IOD A 1 711 26 IOD IOD . N 2 IOD A 1 712 28 IOD IOD . O 3 S6P A 1 713 1 S6P S6P . P 4 1YY A 1 714 1 1YY UNL . Q 5 GOL A 1 715 2 GOL GOL . R 2 IOD B 1 701 1 IOD IOD . S 2 IOD B 1 702 2 IOD IOD . T 2 IOD B 1 703 3 IOD IOD . U 2 IOD B 1 704 4 IOD IOD . V 2 IOD B 1 705 8 IOD IOD . W 2 IOD B 1 706 11 IOD IOD . X 2 IOD B 1 707 13 IOD IOD . Y 2 IOD B 1 708 15 IOD IOD . Z 2 IOD B 1 709 16 IOD IOD . AA 2 IOD B 1 710 20 IOD IOD . BA 2 IOD B 1 711 22 IOD IOD . CA 2 IOD B 1 712 23 IOD IOD . DA 2 IOD B 1 713 25 IOD IOD . EA 2 IOD B 1 714 27 IOD IOD . FA 3 S6P B 1 715 1 S6P S6P . GA 4 1YY B 1 716 1 1YY UNL . HA 5 GOL B 1 717 1 GOL GOL . IA 6 SO4 B 1 718 1 SO4 SO4 . JA 6 SO4 B 1 719 2 SO4 SO4 . KA 7 HOH A 1 801 3 HOH HOH . KA 7 HOH A 2 802 5 HOH HOH . KA 7 HOH A 3 803 6 HOH HOH . KA 7 HOH A 4 804 9 HOH HOH . KA 7 HOH A 5 805 11 HOH HOH . KA 7 HOH A 6 806 12 HOH HOH . KA 7 HOH A 7 807 17 HOH HOH . KA 7 HOH A 8 808 20 HOH HOH . KA 7 HOH A 9 809 21 HOH HOH . KA 7 HOH A 10 810 23 HOH HOH . KA 7 HOH A 11 811 24 HOH HOH . KA 7 HOH A 12 812 25 HOH HOH . KA 7 HOH A 13 813 27 HOH HOH . KA 7 HOH A 14 814 34 HOH HOH . KA 7 HOH A 15 815 36 HOH HOH . KA 7 HOH A 16 816 38 HOH HOH . KA 7 HOH A 17 817 42 HOH HOH . KA 7 HOH A 18 818 43 HOH HOH . KA 7 HOH A 19 819 45 HOH HOH . KA 7 HOH A 20 820 49 HOH HOH . KA 7 HOH A 21 821 51 HOH HOH . KA 7 HOH A 22 822 53 HOH HOH . KA 7 HOH A 23 823 57 HOH HOH . KA 7 HOH A 24 824 58 HOH HOH . KA 7 HOH A 25 825 59 HOH HOH . KA 7 HOH A 26 826 60 HOH HOH . KA 7 HOH A 27 827 65 HOH HOH . KA 7 HOH A 28 828 68 HOH HOH . KA 7 HOH A 29 829 70 HOH HOH . KA 7 HOH A 30 830 72 HOH HOH . KA 7 HOH A 31 831 73 HOH HOH . KA 7 HOH A 32 832 74 HOH HOH . KA 7 HOH A 33 833 77 HOH HOH . KA 7 HOH A 34 834 78 HOH HOH . KA 7 HOH A 35 835 80 HOH HOH . KA 7 HOH A 36 836 82 HOH HOH . KA 7 HOH A 37 837 83 HOH HOH . KA 7 HOH A 38 838 87 HOH HOH . KA 7 HOH A 39 839 89 HOH HOH . KA 7 HOH A 40 840 93 HOH HOH . KA 7 HOH A 41 841 102 HOH HOH . KA 7 HOH A 42 842 110 HOH HOH . KA 7 HOH A 43 843 113 HOH HOH . KA 7 HOH A 44 844 114 HOH HOH . KA 7 HOH A 45 845 115 HOH HOH . KA 7 HOH A 46 846 121 HOH HOH . KA 7 HOH A 47 847 129 HOH HOH . KA 7 HOH A 48 848 142 HOH HOH . KA 7 HOH A 49 849 143 HOH HOH . KA 7 HOH A 50 850 144 HOH HOH . KA 7 HOH A 51 851 145 HOH HOH . KA 7 HOH A 52 852 151 HOH HOH . KA 7 HOH A 53 853 152 HOH HOH . KA 7 HOH A 54 854 153 HOH HOH . KA 7 HOH A 55 855 165 HOH HOH . KA 7 HOH A 56 856 166 HOH HOH . LA 7 HOH B 1 801 4 HOH HOH . LA 7 HOH B 2 802 7 HOH HOH . LA 7 HOH B 3 803 8 HOH HOH . LA 7 HOH B 4 804 10 HOH HOH . LA 7 HOH B 5 805 13 HOH HOH . LA 7 HOH B 6 806 14 HOH HOH . LA 7 HOH B 7 807 15 HOH HOH . LA 7 HOH B 8 808 16 HOH HOH . LA 7 HOH B 9 809 18 HOH HOH . LA 7 HOH B 10 810 19 HOH HOH . LA 7 HOH B 11 811 26 HOH HOH . LA 7 HOH B 12 812 28 HOH HOH . LA 7 HOH B 13 813 29 HOH HOH . LA 7 HOH B 14 814 31 HOH HOH . LA 7 HOH B 15 815 32 HOH HOH . LA 7 HOH B 16 816 33 HOH HOH . LA 7 HOH B 17 817 35 HOH HOH . LA 7 HOH B 18 818 37 HOH HOH . LA 7 HOH B 19 819 39 HOH HOH . LA 7 HOH B 20 820 40 HOH HOH . LA 7 HOH B 21 821 44 HOH HOH . LA 7 HOH B 22 822 46 HOH HOH . LA 7 HOH B 23 823 48 HOH HOH . LA 7 HOH B 24 824 50 HOH HOH . LA 7 HOH B 25 825 52 HOH HOH . LA 7 HOH B 26 826 54 HOH HOH . LA 7 HOH B 27 827 56 HOH HOH . LA 7 HOH B 28 828 61 HOH HOH . LA 7 HOH B 29 829 64 HOH HOH . LA 7 HOH B 30 830 66 HOH HOH . LA 7 HOH B 31 831 69 HOH HOH . LA 7 HOH B 32 832 71 HOH HOH . LA 7 HOH B 33 833 75 HOH HOH . LA 7 HOH B 34 834 76 HOH HOH . LA 7 HOH B 35 835 79 HOH HOH . LA 7 HOH B 36 836 81 HOH HOH . LA 7 HOH B 37 837 84 HOH HOH . LA 7 HOH B 38 838 85 HOH HOH . LA 7 HOH B 39 839 88 HOH HOH . LA 7 HOH B 40 840 91 HOH HOH . LA 7 HOH B 41 841 92 HOH HOH . LA 7 HOH B 42 842 94 HOH HOH . LA 7 HOH B 43 843 96 HOH HOH . LA 7 HOH B 44 844 97 HOH HOH . LA 7 HOH B 45 845 99 HOH HOH . LA 7 HOH B 46 846 100 HOH HOH . LA 7 HOH B 47 847 101 HOH HOH . LA 7 HOH B 48 848 103 HOH HOH . LA 7 HOH B 49 849 105 HOH HOH . LA 7 HOH B 50 850 107 HOH HOH . LA 7 HOH B 51 851 108 HOH HOH . LA 7 HOH B 52 852 109 HOH HOH . LA 7 HOH B 53 853 111 HOH HOH . LA 7 HOH B 54 854 112 HOH HOH . LA 7 HOH B 55 855 122 HOH HOH . LA 7 HOH B 56 856 123 HOH HOH . LA 7 HOH B 57 857 124 HOH HOH . LA 7 HOH B 58 858 125 HOH HOH . LA 7 HOH B 59 859 126 HOH HOH . LA 7 HOH B 60 860 127 HOH HOH . LA 7 HOH B 61 861 128 HOH HOH . LA 7 HOH B 62 862 130 HOH HOH . LA 7 HOH B 63 863 131 HOH HOH . LA 7 HOH B 64 864 132 HOH HOH . LA 7 HOH B 65 865 133 HOH HOH . LA 7 HOH B 66 866 134 HOH HOH . LA 7 HOH B 67 867 135 HOH HOH . LA 7 HOH B 68 868 136 HOH HOH . LA 7 HOH B 69 869 138 HOH HOH . LA 7 HOH B 70 870 139 HOH HOH . LA 7 HOH B 71 871 140 HOH HOH . LA 7 HOH B 72 872 141 HOH HOH . LA 7 HOH B 73 873 154 HOH HOH . LA 7 HOH B 74 874 155 HOH HOH . LA 7 HOH B 75 875 156 HOH HOH . LA 7 HOH B 76 876 157 HOH HOH . LA 7 HOH B 77 877 158 HOH HOH . LA 7 HOH B 78 878 159 HOH HOH . LA 7 HOH B 79 879 160 HOH HOH . LA 7 HOH B 80 880 161 HOH HOH . LA 7 HOH B 81 881 162 HOH HOH . LA 7 HOH B 82 882 163 HOH HOH . LA 7 HOH B 83 883 164 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C22 1YY . . . P 4 38.361 -20.146 13.512 1 33.07 ? C22 1YY 714 A 1 HETATM 2 C C21 1YY . . . P 4 36.981 -20.768 13.908 1 32.68 ? C21 1YY 714 A 1 HETATM 3 C C20 1YY . . . P 4 35.876 -20.336 12.932 1 31.43 ? C20 1YY 714 A 1 HETATM 4 O O4 1YY . . . P 4 36.026 -20.925 11.616 1 37.51 ? O4 1YY 714 A 1 HETATM 5 C C19 1YY . . . P 4 36.256 -22.358 11.58 1 35.47 ? C19 1YY 714 A 1 HETATM 6 C C18 1YY . . . P 4 37.381 -22.694 12.58 1 34.76 ? C18 1YY 714 A 1 HETATM 7 N N3 1YY . . . P 4 37.007 -22.24 13.925 1 33.35 ? N3 1YY 714 A 1 HETATM 8 C C5 1YY . . . P 4 37.974 -22.727 14.927 1 32.93 ? C5 1YY 714 A 1 HETATM 9 C C3 1YY . . . P 4 37.518 -23.971 15.718 1 30.34 ? C3 1YY 714 A 1 HETATM 10 C C2 1YY . . . P 4 38.258 -25.245 15.18 1 32.22 ? C2 1YY 714 A 1 HETATM 11 N N1 1YY . . . P 4 39.721 -25.017 15.096 1 30.84 ? N1 1YY 714 A 1 HETATM 12 S S1 1YY . . . P 4 40.454 -26.177 14.261 1 31.3 ? S1 1YY 714 A 1 HETATM 13 O O1 1YY . . . P 4 41.91 -26.151 14.555 1 30.31 ? O1 1YY 714 A 1 HETATM 14 O O2 1YY . . . P 4 40.044 -25.979 12.843 1 36.25 ? O2 1YY 714 A 1 HETATM 15 C C6 1YY . . . P 4 39.867 -27.752 14.718 1 33.29 ? C6 1YY 714 A 1 HETATM 16 C C7 1YY . . . P 4 38.901 -28.465 14.116 1 29.61 ? C7 1YY 714 A 1 HETATM 17 C C8 1YY . . . P 4 38.645 -29.623 14.751 1 33.95 ? C8 1YY 714 A 1 HETATM 18 C C9 1YY . . . P 4 39.389 -29.902 15.855 1 33.54 ? C9 1YY 714 A 1 HETATM 19 S S2 1YY . . . P 4 40.47 -28.587 16.037 1 37.87 ? S2 1YY 714 A 1 HETATM 20 C C1 1YY . . . P 4 40.141 -25.033 16.475 1 30.73 ? C1 1YY 714 A 1 HETATM 21 C C4 1YY . . . P 4 39.399 -23.986 17.32 1 30.19 ? C4 1YY 714 A 1 HETATM 22 N N2 1YY . . . P 4 38.015 -23.715 17.018 1 28.51 ? N2 1YY 714 A 1 HETATM 23 C C10 1YY . . . P 4 37.296 -22.903 17.887 1 30.72 ? C10 1YY 714 A 1 HETATM 24 C C15 1YY . . . P 4 37.801 -22.622 19.149 1 31.36 ? C15 1YY 714 A 1 HETATM 25 C C14 1YY . . . P 4 37.12 -21.824 20.036 1 30.19 ? C14 1YY 714 A 1 HETATM 26 C C11 1YY . . . P 4 36.083 -22.363 17.55 1 30.7 ? C11 1YY 714 A 1 HETATM 27 C C12 1YY . . . P 4 35.373 -21.549 18.419 1 32.48 ? C12 1YY 714 A 1 HETATM 28 C C13 1YY . . . P 4 35.891 -21.286 19.662 1 31.72 ? C13 1YY 714 A 1 HETATM 29 C C16 1YY . . . P 4 35.167 -20.389 20.622 1 33.86 ? C16 1YY 714 A 1 HETATM 30 C C23 1YY . . . P 4 34.487 -21.103 21.746 1 35.33 ? C23 1YY 714 A 1 HETATM 31 F F2 1YY . . . P 4 33.703 -20.252 22.436 1 34.81 ? F2 1YY 714 A 1 HETATM 32 F F3 1YY . . . P 4 35.446 -21.632 22.555 1 33.8 ? F3 1YY 714 A 1 HETATM 33 F F1 1YY . . . P 4 33.699 -21.98 21.197 1 35.41 ? F1 1YY 714 A 1 HETATM 34 C C17 1YY . . . P 4 36.268 -19.535 21.245 1 32.39 ? C17 1YY 714 A 1 HETATM 35 O O3 1YY . . . P 4 34.23 -19.629 19.908 1 36.33 ? O3 1YY 714 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 35 #