data_4LYC
#
_model_server_result.job_id            z3eF9J_6jCCgrEZ8GWQyxQ 
_model_server_result.datetime_utc      '2024-11-25 14:46:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4lyc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    4LYC 
#
_exptl.entry_id    4LYC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              112.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CADMIUM ION' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4LYC 
_cell.length_a            78.558 
_cell.length_b            78.558 
_cell.length_c            37.179 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4LYC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K 1 1 
A,B,C,D,E,F,G,H,I,J,K 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 18.5895 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A OG1 THR 43 A THR 43 1_555 E CD CD . A CD 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
metalc ? metalc2 A OG1 THR 51 A THR 51 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc3 A OD2 ASP 66 A ASP 66 1_555 F CD CD . A CD 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc4 A OG1 THR 118 A THR 118 1_555 J CD CD . A CD 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? 
metalc ? metalc5 J CD CD . A CD 209 1_555 K O HOH . A HOH 4056 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? 
#
_chem_comp.formula           'Cd 2' 
_chem_comp.formula_weight    112.411 
_chem_comp.id                CD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CADMIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4LYC 
_atom_sites.fract_transf_matrix[1][1]    0.012729 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012729 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026897 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CD A 1 201 1130 CD CGG . 
C 2 CD A 1 202 1131 CD CGG . 
D 2 CD A 1 203 1132 CD CGG . 
E 2 CD A 1 204 1133 CD CGG . 
F 2 CD A 1 205 1134 CD CGG . 
G 2 CD A 1 206 1135 CD CGG . 
H 2 CD A 1 207 1136 CD CGG . 
I 2 CD A 1 208 1137 CD CGG . 
J 2 CD A 1 209 1138 CD CGG . 
K 3 HOH A 1 4001 4001 HOH HOH . 
K 3 HOH A 2 4002 4002 HOH HOH . 
K 3 HOH A 3 4003 4003 HOH HOH . 
K 3 HOH A 4 4004 4004 HOH HOH . 
K 3 HOH A 5 4005 4005 HOH HOH . 
K 3 HOH A 6 4006 4006 HOH HOH . 
K 3 HOH A 7 4007 4007 HOH HOH . 
K 3 HOH A 8 4008 4008 HOH HOH . 
K 3 HOH A 9 4009 4009 HOH HOH . 
K 3 HOH A 10 4010 4010 HOH HOH . 
K 3 HOH A 11 4011 4011 HOH HOH . 
K 3 HOH A 12 4012 4012 HOH HOH . 
K 3 HOH A 13 4013 4013 HOH HOH . 
K 3 HOH A 14 4014 4014 HOH HOH . 
K 3 HOH A 15 4015 4015 HOH HOH . 
K 3 HOH A 16 4016 4016 HOH HOH . 
K 3 HOH A 17 4017 4017 HOH HOH . 
K 3 HOH A 18 4018 4018 HOH HOH . 
K 3 HOH A 19 4019 4019 HOH HOH . 
K 3 HOH A 20 4020 4020 HOH HOH . 
K 3 HOH A 21 4021 4021 HOH HOH . 
K 3 HOH A 22 4022 4022 HOH HOH . 
K 3 HOH A 23 4023 4023 HOH HOH . 
K 3 HOH A 24 4024 4024 HOH HOH . 
K 3 HOH A 25 4025 4025 HOH HOH . 
K 3 HOH A 26 4026 4026 HOH HOH . 
K 3 HOH A 27 4027 4027 HOH HOH . 
K 3 HOH A 28 4028 4028 HOH HOH . 
K 3 HOH A 29 4029 4029 HOH HOH . 
K 3 HOH A 30 4030 4030 HOH HOH . 
K 3 HOH A 31 4031 4031 HOH HOH . 
K 3 HOH A 32 4032 4032 HOH HOH . 
K 3 HOH A 33 4033 4033 HOH HOH . 
K 3 HOH A 34 4034 4034 HOH HOH . 
K 3 HOH A 35 4035 4035 HOH HOH . 
K 3 HOH A 36 4036 4036 HOH HOH . 
K 3 HOH A 37 4037 4037 HOH HOH . 
K 3 HOH A 38 4038 4038 HOH HOH . 
K 3 HOH A 39 4039 4039 HOH HOH . 
K 3 HOH A 40 4040 4040 HOH HOH . 
K 3 HOH A 41 4041 4041 HOH HOH . 
K 3 HOH A 42 4042 4042 HOH HOH . 
K 3 HOH A 43 4043 4043 HOH HOH . 
K 3 HOH A 44 4044 4044 HOH HOH . 
K 3 HOH A 45 4045 4045 HOH HOH . 
K 3 HOH A 46 4046 4046 HOH HOH . 
K 3 HOH A 47 4047 4047 HOH HOH . 
K 3 HOH A 48 4048 4048 HOH HOH . 
K 3 HOH A 49 4049 4049 HOH HOH . 
K 3 HOH A 50 4050 4050 HOH HOH . 
K 3 HOH A 51 4051 4051 HOH HOH . 
K 3 HOH A 52 4052 4052 HOH HOH . 
K 3 HOH A 53 4053 4053 HOH HOH . 
K 3 HOH A 54 4054 4054 HOH HOH . 
K 3 HOH A 55 4055 4055 HOH HOH . 
K 3 HOH A 56 4056 4056 HOH HOH . 
K 3 HOH A 57 4057 4057 HOH HOH . 
K 3 HOH A 58 4058 4058 HOH HOH . 
K 3 HOH A 59 4059 4059 HOH HOH . 
K 3 HOH A 60 4060 4060 HOH HOH . 
K 3 HOH A 61 4061 4061 HOH HOH . 
K 3 HOH A 62 4062 4062 HOH HOH . 
K 3 HOH A 63 4063 4063 HOH HOH . 
K 3 HOH A 64 4064 4064 HOH HOH . 
K 3 HOH A 65 4065 4065 HOH HOH . 
K 3 HOH A 66 4066 4066 HOH HOH . 
K 3 HOH A 67 4067 4067 HOH HOH . 
K 3 HOH A 68 4068 4068 HOH HOH . 
K 3 HOH A 69 4069 4069 HOH HOH . 
K 3 HOH A 70 4070 4070 HOH HOH . 
K 3 HOH A 71 4071 4071 HOH HOH . 
K 3 HOH A 72 4072 4072 HOH HOH . 
K 3 HOH A 73 4073 4073 HOH HOH . 
K 3 HOH A 74 4074 4074 HOH HOH . 
K 3 HOH A 75 4075 4075 HOH HOH . 
K 3 HOH A 76 4076 4076 HOH HOH . 
K 3 HOH A 77 4077 4077 HOH HOH . 
K 3 HOH A 78 4078 4078 HOH HOH . 
K 3 HOH A 79 4079 4079 HOH HOH . 
K 3 HOH A 80 4080 4080 HOH HOH . 
K 3 HOH A 81 4081 4081 HOH HOH . 
K 3 HOH A 82 4082 4082 HOH HOH . 
K 3 HOH A 83 4083 4083 HOH HOH . 
K 3 HOH A 84 4084 4084 HOH HOH . 
K 3 HOH A 85 4085 4085 HOH HOH . 
K 3 HOH A 86 4086 4086 HOH HOH . 
K 3 HOH A 87 4087 4087 HOH HOH . 
K 3 HOH A 88 4088 4088 HOH HOH . 
K 3 HOH A 89 4089 4089 HOH HOH . 
K 3 HOH A 90 4090 4090 HOH HOH . 
K 3 HOH A 91 4091 4091 HOH HOH . 
K 3 HOH A 92 4092 4092 HOH HOH . 
K 3 HOH A 93 4093 4093 HOH HOH . 
K 3 HOH A 94 4094 4094 HOH HOH . 
K 3 HOH A 95 4095 4095 HOH HOH . 
K 3 HOH A 96 4096 4096 HOH HOH . 
K 3 HOH A 97 4097 4097 HOH HOH . 
K 3 HOH A 98 4098 4098 HOH HOH . 
K 3 HOH A 99 4099 4099 HOH HOH . 
K 3 HOH A 100 4100 4100 HOH HOH . 
K 3 HOH A 101 4101 4101 HOH HOH . 
K 3 HOH A 102 4102 4102 HOH HOH . 
K 3 HOH A 103 4103 4103 HOH HOH . 
K 3 HOH A 104 4104 4104 HOH HOH . 
K 3 HOH A 105 4105 4105 HOH HOH . 
K 3 HOH A 106 4106 4106 HOH HOH . 
K 3 HOH A 107 4107 4107 HOH HOH . 
K 3 HOH A 108 4108 4108 HOH HOH . 
K 3 HOH A 109 4109 4109 HOH HOH . 
K 3 HOH A 110 4110 4110 HOH HOH . 
K 3 HOH A 111 4111 4111 HOH HOH . 
K 3 HOH A 112 4112 4112 HOH HOH . 
K 3 HOH A 113 4113 4113 HOH HOH . 
K 3 HOH A 114 4114 4114 HOH HOH . 
K 3 HOH A 115 4115 4115 HOH HOH . 
K 3 HOH A 116 4116 4116 HOH HOH . 
K 3 HOH A 117 4117 4117 HOH HOH . 
K 3 HOH A 118 4118 4118 HOH HOH . 
K 3 HOH A 119 4119 4119 HOH HOH . 
K 3 HOH A 120 4120 4120 HOH HOH . 
K 3 HOH A 121 4121 4121 HOH HOH . 
K 3 HOH A 122 4122 4122 HOH HOH . 
K 3 HOH A 123 4123 4123 HOH HOH . 
K 3 HOH A 124 4124 4124 HOH HOH . 
K 3 HOH A 125 4125 4125 HOH HOH . 
K 3 HOH A 126 4126 4126 HOH HOH . 
K 3 HOH A 127 4127 4127 HOH HOH . 
K 3 HOH A 128 4128 4128 HOH HOH . 
K 3 HOH A 129 4129 4129 HOH HOH . 
K 3 HOH A 130 4130 4130 HOH HOH . 
K 3 HOH A 131 4131 4131 HOH HOH . 
K 3 HOH A 132 4132 4132 HOH HOH . 
K 3 HOH A 133 4133 4133 HOH HOH . 
K 3 HOH A 134 4134 4134 HOH HOH . 
K 3 HOH A 135 4135 4135 HOH HOH . 
K 3 HOH A 136 4136 4136 HOH HOH . 
K 3 HOH A 137 4137 4137 HOH HOH . 
K 3 HOH A 138 4138 4138 HOH HOH . 
K 3 HOH A 139 4139 4139 HOH HOH . 
K 3 HOH A 140 4140 4140 HOH HOH . 
K 3 HOH A 141 4141 4141 HOH HOH . 
K 3 HOH A 142 4142 4142 HOH HOH . 
K 3 HOH A 143 4143 4143 HOH HOH . 
K 3 HOH A 144 4144 4144 HOH HOH . 
K 3 HOH A 145 4145 4145 HOH HOH . 
K 3 HOH A 146 4146 4146 HOH HOH . 
K 3 HOH A 147 4147 4147 HOH HOH . 
K 3 HOH A 148 4148 4148 HOH HOH . 
K 3 HOH A 149 4149 4149 HOH HOH . 
K 3 HOH A 150 4150 4150 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CD 
_atom_site.label_atom_id         CD 
_atom_site.label_comp_id         CD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -8.285 
_atom_site.Cartn_y               -31.445 
_atom_site.Cartn_z               1.446 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.19 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CD 
_atom_site.auth_comp_id          CD 
_atom_site.auth_seq_id           201 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#