data_4LYJ # _model_server_result.job_id 4x0QXvAsjCwzM8bxsso4jA _model_server_result.datetime_utc '2024-11-22 12:26:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lyj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 4LYJ # _exptl.entry_id 4LYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 515.794 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{1-[N-(4-chloro-5-iodo-2-methoxyphenyl)glycyl]piperidin-4-yl}ethanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LYJ _cell.length_a 38.775 _cell.length_b 43.195 _cell.length_c 87.536 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 13 A CYS 12 1_555 C C17 21F . A 21F 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? metalc ? metalc1 A OG SER 18 A SER 17 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? metalc ? metalc2 A OH TYR 33 A TYR 32 1_555 B MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc3 B MG MG . A MG 201 1_555 D O1B GDP . A GDP 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc4 B MG MG . A MG 201 1_555 E O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 B MG MG . A MG 201 1_555 E O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'C16 H23 Cl I N3 O4 S' _chem_comp.formula_weight 515.794 _chem_comp.id 21F _chem_comp.mon_nstd_flag . _chem_comp.name N-{1-[N-(4-chloro-5-iodo-2-methoxyphenyl)glycyl]piperidin-4-yl}ethanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C20 21F sing 1 n n C13 C12 21F sing 2 n n C13 N14 21F sing 3 n n C17 C16 21F sing 4 n n C20 C21 21F sing 5 n n C21 N10 21F sing 6 n n C26 C02 21F doub 7 n y C26 C23 21F sing 8 n y CL1 C02 21F sing 9 n n C02 C03 21F sing 10 n y C03 I04 21F sing 11 n n C03 C05 21F doub 12 n y C05 C06 21F sing 13 n y C06 N07 21F sing 14 n n C06 C23 21F doub 15 n y N07 C08 21F sing 16 n n C08 C09 21F sing 17 n n C09 N10 21F sing 18 n n C09 O22 21F doub 19 n n N10 C11 21F sing 20 n n C11 C12 21F sing 21 n n N14 S15 21F sing 22 n n S15 C16 21F sing 23 n n S15 O18 21F doub 24 n n S15 O19 21F doub 25 n n C23 O24 21F sing 26 n n O24 C25 21F sing 27 n n C13 H131 21F sing 28 n n C17 H171 21F sing 29 n n C17 H172 21F sing 30 n n C17 H1 21F sing 31 n n C20 H201 21F sing 32 n n C20 H202 21F sing 33 n n C21 H211 21F sing 34 n n C21 H212 21F sing 35 n n C26 H261 21F sing 36 n n C05 H051 21F sing 37 n n N07 H071 21F sing 38 n n C08 H081 21F sing 39 n n C08 H082 21F sing 40 n n C11 H111 21F sing 41 n n C11 H112 21F sing 42 n n C12 H121 21F sing 43 n n C12 H122 21F sing 44 n n N14 H141 21F sing 45 n n C16 H161 21F sing 46 n n C16 H162 21F sing 47 n n C25 H251 21F sing 48 n n C25 H252 21F sing 49 n n C25 H253 21F sing 50 n n # _atom_sites.entry_id 4LYJ _atom_sites.fract_transf_matrix[1][1] 0.02579 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011424 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 201 200 MG MG . C 3 21F A 1 202 210 21F LIG . D 4 GDP A 1 203 220 GDP GDP . E 5 HOH A 1 301 1 HOH HOH . E 5 HOH A 2 302 2 HOH HOH . E 5 HOH A 3 303 3 HOH HOH . E 5 HOH A 4 304 4 HOH HOH . E 5 HOH A 5 305 5 HOH HOH . E 5 HOH A 6 306 6 HOH HOH . E 5 HOH A 7 307 7 HOH HOH . E 5 HOH A 8 308 8 HOH HOH . E 5 HOH A 9 309 9 HOH HOH . E 5 HOH A 10 310 10 HOH HOH . E 5 HOH A 11 311 11 HOH HOH . E 5 HOH A 12 312 12 HOH HOH . E 5 HOH A 13 313 13 HOH HOH . E 5 HOH A 14 314 14 HOH HOH . E 5 HOH A 15 315 15 HOH HOH . E 5 HOH A 16 316 16 HOH HOH . E 5 HOH A 17 317 17 HOH HOH . E 5 HOH A 18 318 18 HOH HOH . E 5 HOH A 19 319 19 HOH HOH . E 5 HOH A 20 320 20 HOH HOH . E 5 HOH A 21 321 21 HOH HOH . E 5 HOH A 22 322 22 HOH HOH . E 5 HOH A 23 323 23 HOH HOH . E 5 HOH A 24 324 24 HOH HOH . E 5 HOH A 25 325 25 HOH HOH . E 5 HOH A 26 326 26 HOH HOH . E 5 HOH A 27 327 27 HOH HOH . E 5 HOH A 28 328 28 HOH HOH . E 5 HOH A 29 329 29 HOH HOH . E 5 HOH A 30 330 30 HOH HOH . E 5 HOH A 31 331 31 HOH HOH . E 5 HOH A 32 332 32 HOH HOH . E 5 HOH A 33 333 33 HOH HOH . E 5 HOH A 34 334 34 HOH HOH . E 5 HOH A 35 335 35 HOH HOH . E 5 HOH A 36 336 36 HOH HOH . E 5 HOH A 37 337 37 HOH HOH . E 5 HOH A 38 338 38 HOH HOH . E 5 HOH A 39 339 39 HOH HOH . E 5 HOH A 40 340 40 HOH HOH . E 5 HOH A 41 341 41 HOH HOH . E 5 HOH A 42 342 42 HOH HOH . E 5 HOH A 43 343 43 HOH HOH . E 5 HOH A 44 344 44 HOH HOH . E 5 HOH A 45 345 45 HOH HOH . E 5 HOH A 46 346 46 HOH HOH . E 5 HOH A 47 347 47 HOH HOH . E 5 HOH A 48 348 48 HOH HOH . E 5 HOH A 49 349 49 HOH HOH . E 5 HOH A 50 350 50 HOH HOH . E 5 HOH A 51 351 51 HOH HOH . E 5 HOH A 52 352 52 HOH HOH . E 5 HOH A 53 353 53 HOH HOH . E 5 HOH A 54 354 54 HOH HOH . E 5 HOH A 55 355 55 HOH HOH . E 5 HOH A 56 356 56 HOH HOH . E 5 HOH A 57 357 57 HOH HOH . E 5 HOH A 58 358 58 HOH HOH . E 5 HOH A 59 359 59 HOH HOH . E 5 HOH A 60 360 60 HOH HOH . E 5 HOH A 61 361 61 HOH HOH . E 5 HOH A 62 362 62 HOH HOH . E 5 HOH A 63 363 63 HOH HOH . E 5 HOH A 64 364 64 HOH HOH . E 5 HOH A 65 365 65 HOH HOH . E 5 HOH A 66 366 66 HOH HOH . E 5 HOH A 67 367 67 HOH HOH . E 5 HOH A 68 368 68 HOH HOH . E 5 HOH A 69 369 69 HOH HOH . E 5 HOH A 70 370 70 HOH HOH . E 5 HOH A 71 371 71 HOH HOH . E 5 HOH A 72 372 72 HOH HOH . E 5 HOH A 73 373 73 HOH HOH . E 5 HOH A 74 374 74 HOH HOH . E 5 HOH A 75 375 75 HOH HOH . E 5 HOH A 76 376 76 HOH HOH . E 5 HOH A 77 377 77 HOH HOH . E 5 HOH A 78 378 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 21F . . . C 3 -1.657 6.815 17.131 1 21.77 ? C13 21F 202 A 1 HETATM 2 C C17 21F . . . C 3 0.609 7.451 13.784 1 32.78 ? C17 21F 202 A 1 HETATM 3 C C20 21F . . . C 3 -2.114 5.657 16.319 1 23.41 ? C20 21F 202 A 1 HETATM 4 C C21 21F . . . C 3 -2.485 4.427 17.097 1 20.49 ? C21 21F 202 A 1 HETATM 5 C C26 21F . . . C 3 -9.282 3.895 19.337 1 20.91 ? C26 21F 202 A 1 HETATM 6 CL CL1 21F . . . C 3 -10.691 5.985 18.305 1 28.79 ? CL1 21F 202 A 1 HETATM 7 C C02 21F . . . C 3 -9.336 4.916 18.356 1 20.2 ? C02 21F 202 A 1 HETATM 8 C C03 21F . . . C 3 -8.278 5.047 17.421 1 14.33 ? C03 21F 202 A 1 HETATM 9 I I04 21F . . . C 3 -8.338 6.561 15.947 1 31.62 ? I04 21F 202 A 1 HETATM 10 C C05 21F . . . C 3 -7.171 4.182 17.452 1 15.4 ? C05 21F 202 A 1 HETATM 11 C C06 21F . . . C 3 -7.13 3.159 18.44 1 17.97 ? C06 21F 202 A 1 HETATM 12 N N07 21F . . . C 3 -6.01 2.246 18.508 1 23.46 ? N07 21F 202 A 1 HETATM 13 C C08 21F . . . C 3 -4.724 2.725 18.114 1 20.6 ? C08 21F 202 A 1 HETATM 14 C C09 21F . . . C 3 -4.131 3.829 18.957 1 22.82 ? C09 21F 202 A 1 HETATM 15 N N10 21F . . . C 3 -3.038 4.648 18.427 1 21.82 ? N10 21F 202 A 1 HETATM 16 C C11 21F . . . C 3 -2.454 5.714 19.221 1 20.41 ? C11 21F 202 A 1 HETATM 17 C C12 21F . . . C 3 -2.349 6.986 18.442 1 21.38 ? C12 21F 202 A 1 HETATM 18 N N14 21F . . . C 3 -1.848 8.04 16.349 1 26.5 ? N14 21F 202 A 1 HETATM 19 S S15 21F . . . C 3 -0.377 8.763 16.078 1 32.71 ? S15 21F 202 A 1 HETATM 20 C C16 21F . . . C 3 0.728 7.626 15.279 1 28.25 ? C16 21F 202 A 1 HETATM 21 O O18 21F . . . C 3 0.193 9.277 17.324 1 40.69 ? O18 21F 202 A 1 HETATM 22 O O19 21F . . . C 3 -0.587 9.96 15.315 1 29.7 ? O19 21F 202 A 1 HETATM 23 O O22 21F . . . C 3 -4.568 4.054 20.1 1 18.53 ? O22 21F 202 A 1 HETATM 24 C C23 21F . . . C 3 -8.177 3.022 19.376 1 17.39 ? C23 21F 202 A 1 HETATM 25 O O24 21F . . . C 3 -8.1 1.988 20.36 1 24.06 ? O24 21F 202 A 1 HETATM 26 C C25 21F . . . C 3 -9.233 1.719 21.137 1 23.24 ? C25 21F 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #