data_4LYN # _model_server_result.job_id fVe_iRs0sdSYyaM7Za1_xg _model_server_result.datetime_utc '2025-03-13 17:55:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lyn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4LYN # _exptl.entry_id 4LYN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-N-(5-{[(5-tert-butyl-1,3-oxazol-2-yl)methyl]sulfanyl}-1,3-thiazol-2-yl)-2-phenylpropanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LYN _cell.length_a 53.46 _cell.length_b 71.84 _cell.length_c 72.19 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LYN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H23 N3 O2 S2' _chem_comp.formula_weight 401.546 _chem_comp.id 1YG _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-N-(5-{[(5-tert-butyl-1,3-oxazol-2-yl)methyl]sulfanyl}-1,3-thiazol-2-yl)-2-phenylpropanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C8 1YG sing 1 n n C8 C10 1YG sing 2 n n C8 C5 1YG sing 3 n n C8 C12 1YG sing 4 n n C5 C7 1YG doub 5 n y C5 O2 1YG sing 6 n y C7 N4 1YG sing 7 n y O2 C1 1YG sing 8 n y N4 C1 1YG doub 9 n y C1 C3 1YG sing 10 n n C3 S6 1YG sing 11 n n S6 C9 1YG sing 12 n n C22 C19 1YG sing 13 n n O20 C18 1YG doub 14 n n C9 S13 1YG sing 15 n y C9 C14 1YG doub 16 n y S13 C15 1YG sing 17 n y C14 N16 1YG sing 18 n y C18 C19 1YG sing 19 n n C18 N17 1YG sing 20 n n C15 N16 1YG doub 21 n y C15 N17 1YG sing 22 n n C19 C21 1YG sing 23 n n C24 C21 1YG doub 24 n y C24 C26 1YG sing 25 n y C21 C23 1YG sing 26 n y C26 C27 1YG doub 27 n y C23 C25 1YG doub 28 n y C27 C25 1YG sing 29 n y C7 H1 1YG sing 30 n n C10 H2 1YG sing 31 n n C10 H3 1YG sing 32 n n C10 H4 1YG sing 33 n n C11 H5 1YG sing 34 n n C11 H6 1YG sing 35 n n C11 H7 1YG sing 36 n n C12 H8 1YG sing 37 n n C12 H9 1YG sing 38 n n C12 H10 1YG sing 39 n n C14 H11 1YG sing 40 n n C3 H12 1YG sing 41 n n C3 H13 1YG sing 42 n n N17 H14 1YG sing 43 n n C19 H15 1YG sing 44 n n C22 H16 1YG sing 45 n n C22 H17 1YG sing 46 n n C22 H18 1YG sing 47 n n C24 H19 1YG sing 48 n n C26 H20 1YG sing 49 n n C27 H21 1YG sing 50 n n C25 H22 1YG sing 51 n n C23 H23 1YG sing 52 n n # _atom_sites.entry_id 4LYN _atom_sites.fract_transf_matrix[1][1] 0.018706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01392 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 1YG A 1 301 1 1YG XXX . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 17 HOH HOH . C 3 HOH A 18 418 18 HOH HOH . C 3 HOH A 19 419 19 HOH HOH . C 3 HOH A 20 420 20 HOH HOH . C 3 HOH A 21 421 21 HOH HOH . C 3 HOH A 22 422 22 HOH HOH . C 3 HOH A 23 423 23 HOH HOH . C 3 HOH A 24 424 24 HOH HOH . C 3 HOH A 25 425 25 HOH HOH . C 3 HOH A 26 426 26 HOH HOH . C 3 HOH A 27 427 27 HOH HOH . C 3 HOH A 28 428 28 HOH HOH . C 3 HOH A 29 429 29 HOH HOH . C 3 HOH A 30 430 30 HOH HOH . C 3 HOH A 31 431 31 HOH HOH . C 3 HOH A 32 432 32 HOH HOH . C 3 HOH A 33 433 33 HOH HOH . C 3 HOH A 34 434 34 HOH HOH . C 3 HOH A 35 435 35 HOH HOH . C 3 HOH A 36 436 36 HOH HOH . C 3 HOH A 37 437 37 HOH HOH . C 3 HOH A 38 438 38 HOH HOH . C 3 HOH A 39 439 39 HOH HOH . C 3 HOH A 40 440 40 HOH HOH . C 3 HOH A 41 441 41 HOH HOH . C 3 HOH A 42 442 42 HOH HOH . C 3 HOH A 43 443 43 HOH HOH . C 3 HOH A 44 444 44 HOH HOH . C 3 HOH A 45 445 45 HOH HOH . C 3 HOH A 46 446 46 HOH HOH . C 3 HOH A 47 447 47 HOH HOH . C 3 HOH A 48 448 48 HOH HOH . C 3 HOH A 49 449 49 HOH HOH . C 3 HOH A 50 450 50 HOH HOH . C 3 HOH A 51 451 51 HOH HOH . C 3 HOH A 52 452 52 HOH HOH . C 3 HOH A 53 453 53 HOH HOH . C 3 HOH A 54 454 54 HOH HOH . C 3 HOH A 55 455 55 HOH HOH . C 3 HOH A 56 456 56 HOH HOH . C 3 HOH A 57 457 57 HOH HOH . C 3 HOH A 58 458 58 HOH HOH . C 3 HOH A 59 459 59 HOH HOH . C 3 HOH A 60 460 60 HOH HOH . C 3 HOH A 61 461 61 HOH HOH . C 3 HOH A 62 462 62 HOH HOH . C 3 HOH A 63 463 63 HOH HOH . C 3 HOH A 64 464 64 HOH HOH . C 3 HOH A 65 465 65 HOH HOH . C 3 HOH A 66 466 66 HOH HOH . C 3 HOH A 67 467 67 HOH HOH . C 3 HOH A 68 468 68 HOH HOH . C 3 HOH A 69 469 69 HOH HOH . C 3 HOH A 70 470 70 HOH HOH . C 3 HOH A 71 471 71 HOH HOH . C 3 HOH A 72 472 72 HOH HOH . C 3 HOH A 73 473 73 HOH HOH . C 3 HOH A 74 474 74 HOH HOH . C 3 HOH A 75 475 75 HOH HOH . C 3 HOH A 76 476 76 HOH HOH . C 3 HOH A 77 477 77 HOH HOH . C 3 HOH A 78 478 78 HOH HOH . C 3 HOH A 79 479 79 HOH HOH . C 3 HOH A 80 480 80 HOH HOH . C 3 HOH A 81 481 81 HOH HOH . C 3 HOH A 82 482 82 HOH HOH . C 3 HOH A 83 483 83 HOH HOH . C 3 HOH A 84 484 84 HOH HOH . C 3 HOH A 85 485 85 HOH HOH . C 3 HOH A 86 486 86 HOH HOH . C 3 HOH A 87 487 87 HOH HOH . C 3 HOH A 88 488 88 HOH HOH . C 3 HOH A 89 489 89 HOH HOH . C 3 HOH A 90 490 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 1YG . . . B 2 28.582 28.022 24.857 1 49.15 ? C5 1YG 301 A 1 HETATM 2 C C7 1YG . . . B 2 29.939 28.279 24.992 1 48.96 ? C7 1YG 301 A 1 HETATM 3 C C8 1YG . . . B 2 27.811 26.73 24.587 1 49.32 ? C8 1YG 301 A 1 HETATM 4 C C9 1YG . . . B 2 27.2 31.394 28.137 1 32.87 ? C9 1YG 301 A 1 HETATM 5 C C10 1YG . . . B 2 28.72 25.515 24.764 1 49.01 ? C10 1YG 301 A 1 HETATM 6 C C11 1YG . . . B 2 27.276 26.738 23.156 1 49.26 ? C11 1YG 301 A 1 HETATM 7 C C12 1YG . . . B 2 26.641 26.606 25.563 1 50.08 ? C12 1YG 301 A 1 HETATM 8 C C14 1YG . . . B 2 26.315 32.263 28.688 1 26.68 ? C14 1YG 301 A 1 HETATM 9 C C15 1YG . . . B 2 25.114 30.455 28.944 1 30.21 ? C15 1YG 301 A 1 HETATM 10 N N4 1YG . . . B 2 30.129 29.596 25.308 1 47.33 ? N4 1YG 301 A 1 HETATM 11 C C1 1YG . . . B 2 28.907 30.119 25.354 1 46.55 ? C1 1YG 301 A 1 HETATM 12 O O2 1YG . . . B 2 27.922 29.214 25.074 1 48.25 ? O2 1YG 301 A 1 HETATM 13 C C3 1YG . . . B 2 28.542 31.489 25.762 1 42.71 ? C3 1YG 301 A 1 HETATM 14 S S6 1YG . . . B 2 28.838 31.581 27.534 1 36.74 ? S6 1YG 301 A 1 HETATM 15 N N16 1YG . . . B 2 25.146 31.738 29.171 1 26.71 ? N16 1YG 301 A 1 HETATM 16 N N17 1YG . . . B 2 23.948 29.752 29.183 1 31.14 ? N17 1YG 301 A 1 HETATM 17 C C18 1YG . . . B 2 23.678 28.477 28.765 1 32.54 ? C18 1YG 301 A 1 HETATM 18 O O20 1YG . . . B 2 24.464 27.799 28.109 1 34.61 ? O20 1YG 301 A 1 HETATM 19 C C19 1YG . . . B 2 22.283 27.969 29.123 1 31.74 ? C19 1YG 301 A 1 HETATM 20 C C22 1YG . . . B 2 21.59 27.437 27.868 1 28.59 ? C22 1YG 301 A 1 HETATM 21 C C21 1YG . . . B 2 22.416 26.939 30.238 1 32.07 ? C21 1YG 301 A 1 HETATM 22 C C24 1YG . . . B 2 22.729 25.609 29.975 1 32.84 ? C24 1YG 301 A 1 HETATM 23 C C26 1YG . . . B 2 22.757 24.672 30.997 1 33.61 ? C26 1YG 301 A 1 HETATM 24 C C27 1YG . . . B 2 22.49 25.056 32.297 1 32.37 ? C27 1YG 301 A 1 HETATM 25 C C25 1YG . . . B 2 22.216 26.38 32.576 1 31.74 ? C25 1YG 301 A 1 HETATM 26 C C23 1YG . . . B 2 22.178 27.316 31.553 1 31.91 ? C23 1YG 301 A 1 HETATM 27 S S13 1YG . . . B 2 26.523 29.784 28.175 1 33.49 ? S13 1YG 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #