data_4LYS # _model_server_result.job_id '_BXXZNCMnvCBBZNJ61lTZA' _model_server_result.datetime_utc '2024-11-21 23:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lys # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 4LYS # _exptl.entry_id 4LYS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 385.41 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(7S)-10-hydroxy-1,2,3-trimethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl]acetamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4LYS _cell.length_a 41.047 _cell.length_b 108.072 _cell.length_c 30.464 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LYS _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 98 A ASN 140 1_555 D C4 2SJ . A 2SJ 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc1 B NA NA . A NA 201 1_555 E O HOH . A HOH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc2 C NA NA . A NA 202 1_555 E O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc3 B NA NA . A NA 201 1_555 D O6 2SJ . A 2SJ 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc4 B NA NA . A NA 201 1_555 D O5 2SJ . A 2SJ 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? # _chem_comp.formula 'C21 H23 N O6' _chem_comp.formula_weight 385.41 _chem_comp.id 2SJ _chem_comp.mon_nstd_flag . _chem_comp.name N-[(7S)-10-hydroxy-1,2,3-trimethoxy-9-oxo-5,6,7,9-tetrahydrobenzo[a]heptalen-7-yl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Colchiceine # _atom_sites.entry_id 4LYS _atom_sites.fract_transf_matrix[1][1] 0.024362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009253 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.032826 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 201 1 NA NA . C 2 NA A 1 202 2 NA NA . D 3 2SJ A 1 203 1 2SJ L01 . E 4 HOH A 1 301 1 HOH HOH . E 4 HOH A 2 302 2 HOH HOH . E 4 HOH A 3 303 3 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 5 HOH HOH . E 4 HOH A 6 306 6 HOH HOH . E 4 HOH A 7 307 7 HOH HOH . E 4 HOH A 8 308 8 HOH HOH . E 4 HOH A 9 309 9 HOH HOH . E 4 HOH A 10 310 10 HOH HOH . E 4 HOH A 11 311 11 HOH HOH . E 4 HOH A 12 312 12 HOH HOH . E 4 HOH A 13 313 13 HOH HOH . E 4 HOH A 14 314 14 HOH HOH . E 4 HOH A 15 315 15 HOH HOH . E 4 HOH A 16 316 16 HOH HOH . E 4 HOH A 17 317 17 HOH HOH . E 4 HOH A 18 318 18 HOH HOH . E 4 HOH A 19 319 19 HOH HOH . E 4 HOH A 20 320 20 HOH HOH . E 4 HOH A 21 321 21 HOH HOH . E 4 HOH A 22 322 22 HOH HOH . E 4 HOH A 23 323 23 HOH HOH . E 4 HOH A 24 324 24 HOH HOH . E 4 HOH A 25 325 25 HOH HOH . E 4 HOH A 26 326 26 HOH HOH . E 4 HOH A 27 327 27 HOH HOH . E 4 HOH A 28 328 28 HOH HOH . E 4 HOH A 29 329 29 HOH HOH . E 4 HOH A 30 330 30 HOH HOH . E 4 HOH A 31 331 31 HOH HOH . E 4 HOH A 32 332 32 HOH HOH . E 4 HOH A 33 333 33 HOH HOH . E 4 HOH A 34 334 34 HOH HOH . E 4 HOH A 35 335 35 HOH HOH . E 4 HOH A 36 336 36 HOH HOH . E 4 HOH A 37 337 37 HOH HOH . E 4 HOH A 38 338 38 HOH HOH . E 4 HOH A 39 339 39 HOH HOH . E 4 HOH A 40 340 40 HOH HOH . E 4 HOH A 41 341 41 HOH HOH . E 4 HOH A 42 342 42 HOH HOH . E 4 HOH A 43 343 43 HOH HOH . E 4 HOH A 44 344 44 HOH HOH . E 4 HOH A 45 345 45 HOH HOH . E 4 HOH A 46 346 46 HOH HOH . E 4 HOH A 47 347 47 HOH HOH . E 4 HOH A 48 348 48 HOH HOH . E 4 HOH A 49 349 49 HOH HOH . E 4 HOH A 50 350 50 HOH HOH . E 4 HOH A 51 351 51 HOH HOH . E 4 HOH A 52 352 52 HOH HOH . E 4 HOH A 53 353 53 HOH HOH . E 4 HOH A 54 354 54 HOH HOH . E 4 HOH A 55 355 55 HOH HOH . E 4 HOH A 56 356 56 HOH HOH . E 4 HOH A 57 357 57 HOH HOH . E 4 HOH A 58 358 58 HOH HOH . E 4 HOH A 59 359 59 HOH HOH . E 4 HOH A 60 360 60 HOH HOH . E 4 HOH A 61 361 61 HOH HOH . E 4 HOH A 62 362 62 HOH HOH . E 4 HOH A 63 363 63 HOH HOH . E 4 HOH A 64 364 64 HOH HOH . E 4 HOH A 65 365 65 HOH HOH . E 4 HOH A 66 366 66 HOH HOH . E 4 HOH A 67 367 67 HOH HOH . E 4 HOH A 68 368 68 HOH HOH . E 4 HOH A 69 369 69 HOH HOH . E 4 HOH A 70 370 71 HOH HOH . E 4 HOH A 71 371 72 HOH HOH . E 4 HOH A 72 372 73 HOH HOH . E 4 HOH A 73 373 74 HOH HOH . E 4 HOH A 74 374 75 HOH HOH . E 4 HOH A 75 375 76 HOH HOH . E 4 HOH A 76 376 77 HOH HOH . E 4 HOH A 77 377 78 HOH HOH . E 4 HOH A 78 378 79 HOH HOH . E 4 HOH A 79 379 80 HOH HOH . E 4 HOH A 80 380 81 HOH HOH . E 4 HOH A 81 381 82 HOH HOH . E 4 HOH A 82 382 83 HOH HOH . E 4 HOH A 83 383 84 HOH HOH . E 4 HOH A 84 384 85 HOH HOH . E 4 HOH A 85 385 86 HOH HOH . E 4 HOH A 86 386 87 HOH HOH . E 4 HOH A 87 387 88 HOH HOH . E 4 HOH A 88 388 89 HOH HOH . E 4 HOH A 89 389 90 HOH HOH . E 4 HOH A 90 390 91 HOH HOH . E 4 HOH A 91 391 92 HOH HOH . E 4 HOH A 92 392 93 HOH HOH . E 4 HOH A 93 393 94 HOH HOH . E 4 HOH A 94 394 95 HOH HOH . E 4 HOH A 95 395 96 HOH HOH . E 4 HOH A 96 396 97 HOH HOH . E 4 HOH A 97 397 98 HOH HOH . E 4 HOH A 98 398 99 HOH HOH . E 4 HOH A 99 399 100 HOH HOH . E 4 HOH A 100 400 101 HOH HOH . E 4 HOH A 101 401 102 HOH HOH . E 4 HOH A 102 402 103 HOH HOH . E 4 HOH A 103 403 104 HOH HOH . E 4 HOH A 104 404 105 HOH HOH . E 4 HOH A 105 405 106 HOH HOH . E 4 HOH A 106 406 107 HOH HOH . E 4 HOH A 107 407 108 HOH HOH . E 4 HOH A 108 408 109 HOH HOH . E 4 HOH A 109 409 110 HOH HOH . E 4 HOH A 110 410 111 HOH HOH . E 4 HOH A 111 411 112 HOH HOH . E 4 HOH A 112 412 113 HOH HOH . E 4 HOH A 113 413 114 HOH HOH . E 4 HOH A 114 414 115 HOH HOH . E 4 HOH A 115 415 116 HOH HOH . E 4 HOH A 116 416 117 HOH HOH . E 4 HOH A 117 417 118 HOH HOH . E 4 HOH A 118 418 119 HOH HOH . E 4 HOH A 119 419 120 HOH HOH . E 4 HOH A 120 420 121 HOH HOH . E 4 HOH A 121 421 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 2SJ . . . D 3 6.919 54.014 4.407 1 14.25 ? O4 2SJ 203 A 1 HETATM 2 C C12 2SJ . . . D 3 6.319 52.951 4.546 1 12.52 ? C12 2SJ 203 A 1 HETATM 3 C C13 2SJ . . . D 3 6.132 52.08 3.364 1 12.3 ? C13 2SJ 203 A 1 HETATM 4 N N1 2SJ . . . D 3 5.811 52.571 5.726 1 12.23 ? N1 2SJ 203 A 1 HETATM 5 C C11 2SJ . . . D 3 5.165 51.29 5.948 1 12.13 ? C11 2SJ 203 A 1 HETATM 6 C C14 2SJ . . . D 3 3.839 51.153 5.244 1 12.09 ? C14 2SJ 203 A 1 HETATM 7 C C15 2SJ . . . D 3 3.213 52.296 4.917 1 12.53 ? C15 2SJ 203 A 1 HETATM 8 C C10 2SJ . . . D 3 4.98 51.026 7.444 1 11.84 ? C10 2SJ 203 A 1 HETATM 9 C C9 2SJ . . . D 3 4.36 49.662 7.759 1 11.68 ? C9 2SJ 203 A 1 HETATM 10 C C8 2SJ . . . D 3 4.707 48.58 6.751 1 11.49 ? C8 2SJ 203 A 1 HETATM 11 C C7 2SJ . . . D 3 5.491 47.497 7.133 1 11.24 ? C7 2SJ 203 A 1 HETATM 12 C C5 2SJ . . . D 3 5.816 46.494 6.229 1 11.22 ? C5 2SJ 203 A 1 HETATM 13 C C3 2SJ . . . D 3 5.367 46.571 4.935 1 11.5 ? C3 2SJ 203 A 1 HETATM 14 C C1 2SJ . . . D 3 4.573 47.627 4.551 1 11.39 ? C1 2SJ 203 A 1 HETATM 15 O O1 2SJ . . . D 3 4.145 47.679 3.255 1 11.09 ? O1 2SJ 203 A 1 HETATM 16 C C2 2SJ . . . D 3 4.709 48.671 2.397 1 11.08 ? C2 2SJ 203 A 1 HETATM 17 O O2 2SJ . . . D 3 5.631 45.558 4.059 1 11.77 ? O2 2SJ 203 A 1 HETATM 18 C C4 2SJ . . . D 3 6.681 45.661 3.156 1 12.78 ? C4 2SJ 203 A 1 HETATM 19 O O3 2SJ . . . D 3 6.578 45.405 6.556 1 11.22 ? O3 2SJ 203 A 1 HETATM 20 C C6 2SJ . . . D 3 7.121 45.229 7.855 1 11.48 ? C6 2SJ 203 A 1 HETATM 21 C C22 2SJ . . . D 3 4.244 48.643 5.452 1 11.51 ? C22 2SJ 203 A 1 HETATM 22 C C21 2SJ . . . D 3 3.382 49.787 4.989 1 11.96 ? C21 2SJ 203 A 1 HETATM 23 C C20 2SJ . . . D 3 2.239 49.384 4.387 1 11.73 ? C20 2SJ 203 A 1 HETATM 24 C C19 2SJ . . . D 3 1.165 50.14 3.788 1 12.04 ? C19 2SJ 203 A 1 HETATM 25 C C17 2SJ . . . D 3 1.044 51.465 3.711 1 12.26 ? C17 2SJ 203 A 1 HETATM 26 C C16 2SJ . . . D 3 1.946 52.487 4.218 1 12.63 ? C16 2SJ 203 A 1 HETATM 27 O O5 2SJ . . . D 3 1.623 53.654 4.017 1 13.7 ? O5 2SJ 203 A 1 HETATM 28 O O6 2SJ . . . D 3 -0.021 51.923 3.084 1 12.05 ? O6 2SJ 203 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #