data_4LZ2 # _model_server_result.job_id HeeqC-G3gKvXNQ3H24rvcw _model_server_result.datetime_utc '2024-11-26 14:05:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lz2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1902}' # _entry.id 4LZ2 # _exptl.entry_id 4LZ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4LZ2 _cell.length_a 95.417 _cell.length_b 95.417 _cell.length_c 33.054 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LZ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F MG MG . A MG 1905 1_555 G O HOH . A HOH 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc2 F MG MG . A MG 1905 1_555 G O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 F MG MG . A MG 1905 1_555 G O HOH . A HOH 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc4 F MG MG . A MG 1905 1_555 G O HOH . A HOH 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 F MG MG . A MG 1905 1_555 G O HOH . A HOH 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc6 F MG MG . A MG 1905 1_555 G O HOH . A HOH 2006 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 4LZ2 _atom_sites.fract_transf_matrix[1][1] 0.01048 _atom_sites.fract_transf_matrix[1][2] 0.006051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.030254 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 1901 1 EDO EDO . C 2 EDO A 1 1902 2 EDO EDO . D 2 EDO A 1 1903 3 EDO EDO . E 2 EDO A 1 1904 4 EDO EDO . F 3 MG A 1 1905 5 MG MO6 . G 4 HOH A 1 2001 5 HOH MO6 . G 4 HOH A 2 2002 5 HOH MO6 . G 4 HOH A 3 2003 5 HOH MO6 . G 4 HOH A 4 2004 5 HOH MO6 . G 4 HOH A 5 2005 5 HOH MO6 . G 4 HOH A 6 2006 5 HOH MO6 . G 4 HOH A 7 2007 1 HOH HOH . G 4 HOH A 8 2008 2 HOH HOH . G 4 HOH A 9 2009 3 HOH HOH . G 4 HOH A 10 2010 4 HOH HOH . G 4 HOH A 11 2011 5 HOH HOH . G 4 HOH A 12 2012 6 HOH HOH . G 4 HOH A 13 2013 7 HOH HOH . G 4 HOH A 14 2014 8 HOH HOH . G 4 HOH A 15 2015 9 HOH HOH . G 4 HOH A 16 2016 10 HOH HOH . G 4 HOH A 17 2017 11 HOH HOH . G 4 HOH A 18 2018 12 HOH HOH . G 4 HOH A 19 2019 13 HOH HOH . G 4 HOH A 20 2020 14 HOH HOH . G 4 HOH A 21 2021 15 HOH HOH . G 4 HOH A 22 2022 16 HOH HOH . G 4 HOH A 23 2023 17 HOH HOH . G 4 HOH A 24 2024 18 HOH HOH . G 4 HOH A 25 2025 19 HOH HOH . G 4 HOH A 26 2026 20 HOH HOH . G 4 HOH A 27 2027 21 HOH HOH . G 4 HOH A 28 2028 22 HOH HOH . G 4 HOH A 29 2029 23 HOH HOH . G 4 HOH A 30 2030 24 HOH HOH . G 4 HOH A 31 2031 25 HOH HOH . G 4 HOH A 32 2032 26 HOH HOH . G 4 HOH A 33 2033 27 HOH HOH . G 4 HOH A 34 2034 28 HOH HOH . G 4 HOH A 35 2035 29 HOH HOH . G 4 HOH A 36 2036 30 HOH HOH . G 4 HOH A 37 2037 31 HOH HOH . G 4 HOH A 38 2038 32 HOH HOH . G 4 HOH A 39 2039 33 HOH HOH . G 4 HOH A 40 2040 34 HOH HOH . G 4 HOH A 41 2041 35 HOH HOH . G 4 HOH A 42 2042 36 HOH HOH . G 4 HOH A 43 2043 37 HOH HOH . G 4 HOH A 44 2044 38 HOH HOH . G 4 HOH A 45 2045 39 HOH HOH . G 4 HOH A 46 2046 40 HOH HOH . G 4 HOH A 47 2047 41 HOH HOH . G 4 HOH A 48 2048 42 HOH HOH . G 4 HOH A 49 2049 43 HOH HOH . G 4 HOH A 50 2050 44 HOH HOH . G 4 HOH A 51 2051 45 HOH HOH . G 4 HOH A 52 2052 46 HOH HOH . G 4 HOH A 53 2053 47 HOH HOH . G 4 HOH A 54 2054 48 HOH HOH . G 4 HOH A 55 2055 49 HOH HOH . G 4 HOH A 56 2056 50 HOH HOH . G 4 HOH A 57 2057 51 HOH HOH . G 4 HOH A 58 2058 52 HOH HOH . G 4 HOH A 59 2059 53 HOH HOH . G 4 HOH A 60 2060 54 HOH HOH . G 4 HOH A 61 2061 55 HOH HOH . G 4 HOH A 62 2062 56 HOH HOH . G 4 HOH A 63 2063 57 HOH HOH . G 4 HOH A 64 2064 58 HOH HOH . G 4 HOH A 65 2065 59 HOH HOH . G 4 HOH A 66 2066 60 HOH HOH . G 4 HOH A 67 2067 61 HOH HOH . G 4 HOH A 68 2068 62 HOH HOH . G 4 HOH A 69 2069 63 HOH HOH . G 4 HOH A 70 2070 64 HOH HOH . G 4 HOH A 71 2071 65 HOH HOH . G 4 HOH A 72 2072 66 HOH HOH . G 4 HOH A 73 2073 67 HOH HOH . G 4 HOH A 74 2074 68 HOH HOH . G 4 HOH A 75 2075 69 HOH HOH . G 4 HOH A 76 2076 70 HOH HOH . G 4 HOH A 77 2077 71 HOH HOH . G 4 HOH A 78 2078 72 HOH HOH . G 4 HOH A 79 2079 73 HOH HOH . G 4 HOH A 80 2080 74 HOH HOH . G 4 HOH A 81 2081 75 HOH HOH . G 4 HOH A 82 2082 76 HOH HOH . G 4 HOH A 83 2083 77 HOH HOH . G 4 HOH A 84 2084 78 HOH HOH . G 4 HOH A 85 2085 79 HOH HOH . G 4 HOH A 86 2086 80 HOH HOH . G 4 HOH A 87 2087 81 HOH HOH . G 4 HOH A 88 2088 82 HOH HOH . G 4 HOH A 89 2089 83 HOH HOH . G 4 HOH A 90 2090 84 HOH HOH . G 4 HOH A 91 2091 85 HOH HOH . G 4 HOH A 92 2092 86 HOH HOH . G 4 HOH A 93 2093 87 HOH HOH . G 4 HOH A 94 2094 88 HOH HOH . G 4 HOH A 95 2095 89 HOH HOH . G 4 HOH A 96 2096 90 HOH HOH . G 4 HOH A 97 2097 91 HOH HOH . G 4 HOH A 98 2098 92 HOH HOH . G 4 HOH A 99 2099 93 HOH HOH . G 4 HOH A 100 2100 94 HOH HOH . G 4 HOH A 101 2101 95 HOH HOH . G 4 HOH A 102 2102 96 HOH HOH . G 4 HOH A 103 2103 97 HOH HOH . G 4 HOH A 104 2104 98 HOH HOH . G 4 HOH A 105 2105 99 HOH HOH . G 4 HOH A 106 2106 100 HOH HOH . G 4 HOH A 107 2107 101 HOH HOH . G 4 HOH A 108 2108 102 HOH HOH . G 4 HOH A 109 2109 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 2 66.921 47.57 -9.702 1 66.78 ? C1 EDO 1902 A 1 HETATM 2 O O1 EDO . . . C 2 65.951 47.261 -10.716 1 54.81 ? O1 EDO 1902 A 1 HETATM 3 C C2 EDO . . . C 2 66.575 46.727 -8.488 1 66.56 ? C2 EDO 1902 A 1 HETATM 4 O O2 EDO . . . C 2 67.184 45.434 -8.643 1 49.1 ? O2 EDO 1902 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 803 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #