data_4LZC # _model_server_result.job_id ddMHUjoQHZzOJsCNcVA9mQ _model_server_result.datetime_utc '2024-11-13 12:40:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4lzc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4LZC # _exptl.entry_id 4LZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.79 _cell.angle_gamma 90 _cell.entry_id 4LZC _cell.length_a 53.183 _cell.length_b 47.07 _cell.length_c 75.585 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 120 A ASP 99 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc2 A OD2 ASP 120 A ASP 99 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc3 A OD1 ASN 261 A ASN 240 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc4 A OG SER 265 A SER 244 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc5 A OE2 GLU 269 A GLU 248 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc6 B MG MG . A MG 401 1_555 E O1 POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc7 B MG MG . A MG 401 1_555 G O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc8 C MG MG . A MG 402 1_555 E O1 POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc9 C MG MG . A MG 402 1_555 E O4 POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc10 C MG MG . A MG 402 1_555 G O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc11 C MG MG . A MG 402 1_555 G O HOH . A HOH 541 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc12 C MG MG . A MG 402 1_555 G O HOH . A HOH 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc13 D MG MG . A MG 403 1_555 E O POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc14 D MG MG . A MG 403 1_555 E O6 POP . A POP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc15 D MG MG . A MG 403 1_555 G O HOH . A HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 260 n n P1 O2 POP sing 261 n n P1 O3 POP sing 262 n n P1 O POP sing 263 n n O2 HO2 POP sing 264 n n O P2 POP sing 265 n n P2 O4 POP doub 266 n n P2 O5 POP sing 267 n n P2 O6 POP sing 268 n n O5 HO5 POP sing 269 n n # _atom_sites.entry_id 4LZC _atom_sites.fract_transf_matrix[1][1] 0.018803 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001907 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021245 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013298 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 700 MG MG . C 2 MG A 1 402 701 MG MG . D 2 MG A 1 403 702 MG MG . E 3 POP A 1 404 703 POP POP . F 4 SO4 A 1 405 1 SO4 SO4 . G 5 HOH A 1 501 1 HOH HOH . G 5 HOH A 2 502 2 HOH HOH . G 5 HOH A 3 503 3 HOH HOH . G 5 HOH A 4 504 4 HOH HOH . G 5 HOH A 5 505 5 HOH HOH . G 5 HOH A 6 506 6 HOH HOH . G 5 HOH A 7 507 7 HOH HOH . G 5 HOH A 8 508 8 HOH HOH . G 5 HOH A 9 509 9 HOH HOH . G 5 HOH A 10 510 10 HOH HOH . G 5 HOH A 11 511 11 HOH HOH . G 5 HOH A 12 512 12 HOH HOH . G 5 HOH A 13 513 13 HOH HOH . G 5 HOH A 14 514 14 HOH HOH . G 5 HOH A 15 515 15 HOH HOH . G 5 HOH A 16 516 16 HOH HOH . G 5 HOH A 17 517 17 HOH HOH . G 5 HOH A 18 518 18 HOH HOH . G 5 HOH A 19 519 19 HOH HOH . G 5 HOH A 20 520 20 HOH HOH . G 5 HOH A 21 521 21 HOH HOH . G 5 HOH A 22 522 22 HOH HOH . G 5 HOH A 23 523 23 HOH HOH . G 5 HOH A 24 524 24 HOH HOH . G 5 HOH A 25 525 25 HOH HOH . G 5 HOH A 26 526 26 HOH HOH . G 5 HOH A 27 527 27 HOH HOH . G 5 HOH A 28 528 28 HOH HOH . G 5 HOH A 29 529 29 HOH HOH . G 5 HOH A 30 530 30 HOH HOH . G 5 HOH A 31 531 31 HOH HOH . G 5 HOH A 32 532 32 HOH HOH . G 5 HOH A 33 533 33 HOH HOH . G 5 HOH A 34 534 34 HOH HOH . G 5 HOH A 35 535 35 HOH HOH . G 5 HOH A 36 536 36 HOH HOH . G 5 HOH A 37 537 37 HOH HOH . G 5 HOH A 38 538 38 HOH HOH . G 5 HOH A 39 539 39 HOH HOH . G 5 HOH A 40 540 40 HOH HOH . G 5 HOH A 41 541 41 HOH HOH . G 5 HOH A 42 542 42 HOH HOH . G 5 HOH A 43 543 43 HOH HOH . G 5 HOH A 44 544 44 HOH HOH . G 5 HOH A 45 545 45 HOH HOH . G 5 HOH A 46 546 46 HOH HOH . G 5 HOH A 47 547 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . E 3 13.155 -7.574 -17.227 1 28.84 ? P1 POP 404 A 1 HETATM 2 O O1 POP . . . E 3 13.68 -7.273 -15.843 1 23.95 ? O1 POP 404 A 1 HETATM 3 O O2 POP . . . E 3 11.699 -7.185 -17.319 1 44.19 ? O2 POP 404 A 1 HETATM 4 O O3 POP . . . E 3 13.282 -9.054 -17.504 1 34.28 ? O3 POP 404 A 1 HETATM 5 O O POP . . . E 3 14.015 -6.781 -18.339 1 45.71 ? O POP 404 A 1 HETATM 6 P P2 POP . . . E 3 14.934 -5.483 -18.067 1 25.7 ? P2 POP 404 A 1 HETATM 7 O O4 POP . . . E 3 15.362 -5.403 -16.622 1 34.68 ? O4 POP 404 A 1 HETATM 8 O O5 POP . . . E 3 14.201 -4.222 -18.457 1 35.79 ? O5 POP 404 A 1 HETATM 9 O O6 POP . . . E 3 16.173 -5.637 -18.912 1 43.43 ? O6 POP 404 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #