data_4M06
#
_model_server_result.job_id            u9Pi6jWXQE5dPuDaOvhAvw 
_model_server_result.datetime_utc      '2024-11-23 16:11:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m06 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":301}' 
#
_entry.id    4M06 
#
_exptl.entry_id    4M06 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.94 
_cell.angle_gamma         90 
_cell.entry_id            4M06 
_cell.length_a            136.21 
_cell.length_b            113.42 
_cell.length_c            118.84 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M06 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 I N N 
? 2 K N N 
? 2 N N N 
? 2 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 182 A HIS 160 1_555 F FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc2 B NE2 HIS 182 B HIS 160 1_555 I FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc3 C NE2 HIS 182 C HIS 160 1_555 K FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc4 D NE2 HIS 182 D HIS 160 1_555 N FE HEM . D HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc5 E NE2 HIS 182 E HIS 160 1_555 P FE HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 139 n n 
CHA C4D HEM doub 140 n n 
CHA HHA HEM sing 141 n n 
CHB C4A HEM sing 142 n n 
CHB C1B HEM doub 143 n n 
CHB HHB HEM sing 144 n n 
CHC C4B HEM sing 145 n n 
CHC C1C HEM doub 146 n n 
CHC HHC HEM sing 147 n n 
CHD C4C HEM doub 148 n n 
CHD C1D HEM sing 149 n n 
CHD HHD HEM sing 150 n n 
C1A C2A HEM doub 151 n y 
C1A NA HEM sing 152 n y 
C2A C3A HEM sing 153 n y 
C2A CAA HEM sing 154 n n 
C3A C4A HEM doub 155 n y 
C3A CMA HEM sing 156 n n 
C4A NA HEM sing 157 n y 
CMA HMA HEM sing 158 n n 
CMA HMAA HEM sing 159 n n 
CMA HMAB HEM sing 160 n n 
CAA CBA HEM sing 161 n n 
CAA HAA HEM sing 162 n n 
CAA HAAA HEM sing 163 n n 
CBA CGA HEM sing 164 n n 
CBA HBA HEM sing 165 n n 
CBA HBAA HEM sing 166 n n 
CGA O1A HEM doub 167 n n 
CGA O2A HEM sing 168 n n 
C1B C2B HEM sing 169 n n 
C1B NB HEM sing 170 n n 
C2B C3B HEM doub 171 n n 
C2B CMB HEM sing 172 n n 
C3B C4B HEM sing 173 n n 
C3B CAB HEM sing 174 n n 
C4B NB HEM doub 175 n n 
CMB HMB HEM sing 176 n n 
CMB HMBA HEM sing 177 n n 
CMB HMBB HEM sing 178 n n 
CAB CBB HEM doub 179 n n 
CAB HAB HEM sing 180 n n 
CBB HBB HEM sing 181 n n 
CBB HBBA HEM sing 182 n n 
C1C C2C HEM sing 183 n y 
C1C NC HEM sing 184 n y 
C2C C3C HEM doub 185 n y 
C2C CMC HEM sing 186 n n 
C3C C4C HEM sing 187 n y 
C3C CAC HEM sing 188 n n 
C4C NC HEM sing 189 n y 
CMC HMC HEM sing 190 n n 
CMC HMCA HEM sing 191 n n 
CMC HMCB HEM sing 192 n n 
CAC CBC HEM doub 193 n n 
CAC HAC HEM sing 194 n n 
CBC HBC HEM sing 195 n n 
CBC HBCA HEM sing 196 n n 
C1D C2D HEM sing 197 n n 
C1D ND HEM doub 198 n n 
C2D C3D HEM doub 199 n n 
C2D CMD HEM sing 200 n n 
C3D C4D HEM sing 201 n n 
C3D CAD HEM sing 202 n n 
C4D ND HEM sing 203 n n 
CMD HMD HEM sing 204 n n 
CMD HMDA HEM sing 205 n n 
CMD HMDB HEM sing 206 n n 
CAD CBD HEM sing 207 n n 
CAD HAD HEM sing 208 n n 
CAD HADA HEM sing 209 n n 
CBD CGD HEM sing 210 n n 
CBD HBD HEM sing 211 n n 
CBD HBDA HEM sing 212 n n 
CGD O1D HEM doub 213 n n 
CGD O2D HEM sing 214 n n 
O2A H2A HEM sing 215 n n 
O2D H2D HEM sing 216 n n 
FE NA HEM sing 217 n n 
FE NB HEM sing 218 n n 
FE NC HEM sing 219 n n 
FE ND HEM sing 220 n n 
#
_atom_sites.entry_id                     4M06 
_atom_sites.fract_transf_matrix[1][1]    0.007342 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003894 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 HEM A 1 301 239 HEM HEM . 
G 3 GOL A 1 302 1 GOL GOL . 
H 4 CYN A 1 303 1 CYN CYN . 
I 2 HEM B 1 301 239 HEM HEM . 
J 4 CYN B 1 302 1 CYN CYN . 
K 2 HEM C 1 301 239 HEM HEM . 
L 4 CYN C 1 302 1 CYN CYN . 
M 5 EDO C 1 303 1 EDO EDO . 
N 2 HEM D 1 301 239 HEM HEM . 
O 4 CYN D 1 302 1 CYN CYN . 
P 2 HEM E 1 301 239 HEM HEM . 
Q 4 CYN E 1 302 1 CYN CYN . 
R 5 EDO E 1 303 1 EDO EDO . 
S 6 HOH A 1 401 1 HOH HOH . 
T 6 HOH C 1 401 2 HOH HOH . 
T 6 HOH C 2 402 3 HOH HOH . 
T 6 HOH C 3 403 5 HOH HOH . 
U 6 HOH E 1 401 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . N 2 15.814 -15.085 -21.482 1 80.64 ? CHA HEM 301 D 1 
HETATM 2 C CHB HEM . . . N 2 16.105 -19.921 -21.191 1 79.53 ? CHB HEM 301 D 1 
HETATM 3 C CHC HEM . . . N 2 11.528 -20.292 -22.729 1 62.54 ? CHC HEM 301 D 1 
HETATM 4 C CHD HEM . . . N 2 10.973 -15.5 -22.167 1 65.98 ? CHD HEM 301 D 1 
HETATM 5 C C1A HEM . . . N 2 16.294 -16.357 -21.26 1 79.73 ? C1A HEM 301 D 1 
HETATM 6 C C2A HEM . . . N 2 17.617 -16.696 -20.769 1 76.95 ? C2A HEM 301 D 1 
HETATM 7 C C3A HEM . . . N 2 17.698 -18.026 -20.691 1 74.59 ? C3A HEM 301 D 1 
HETATM 8 C C4A HEM . . . N 2 16.43 -18.582 -21.125 1 79.12 ? C4A HEM 301 D 1 
HETATM 9 C CMA HEM . . . N 2 18.929 -18.827 -20.218 1 78.9 ? CMA HEM 301 D 1 
HETATM 10 C CAA HEM . . . N 2 18.739 -15.696 -20.406 1 80.47 ? CAA HEM 301 D 1 
HETATM 11 C CBA HEM . . . N 2 19.492 -15.295 -21.669 1 87.38 ? CBA HEM 301 D 1 
HETATM 12 C CGA HEM . . . N 2 20.567 -14.294 -21.337 1 96.71 ? CGA HEM 301 D 1 
HETATM 13 O O1A HEM . . . N 2 21.371 -14.552 -20.407 1 103.82 ? O1A HEM 301 D 1 
HETATM 14 O O2A HEM . . . N 2 20.633 -13.238 -22.017 1 97.94 ? O2A HEM 301 D 1 
HETATM 15 C C1B HEM . . . N 2 14.923 -20.432 -21.681 1 79.39 ? C1B HEM 301 D 1 
HETATM 16 C C2B HEM . . . N 2 14.693 -21.814 -22.056 1 85.45 ? C2B HEM 301 D 1 
HETATM 17 C C3B HEM . . . N 2 13.415 -21.921 -22.482 1 84.36 ? C3B HEM 301 D 1 
HETATM 18 C C4B HEM . . . N 2 12.823 -20.602 -22.393 1 72.06 ? C4B HEM 301 D 1 
HETATM 19 C CMB HEM . . . N 2 15.798 -22.888 -21.927 1 82.74 ? CMB HEM 301 D 1 
HETATM 20 C CAB HEM . . . N 2 12.591 -23.124 -23.013 1 81.54 ? CAB HEM 301 D 1 
HETATM 21 C CBB HEM . . . N 2 13.099 -24.32 -23.33 1 94.39 ? CBB HEM 301 D 1 
HETATM 22 C C1C HEM . . . N 2 10.962 -19.039 -22.639 1 69.55 ? C1C HEM 301 D 1 
HETATM 23 C C2C HEM . . . N 2 9.551 -18.75 -22.81 1 70.27 ? C2C HEM 301 D 1 
HETATM 24 C C3C HEM . . . N 2 9.391 -17.419 -22.667 1 66.4 ? C3C HEM 301 D 1 
HETATM 25 C C4C HEM . . . N 2 10.701 -16.841 -22.388 1 67.88 ? C4C HEM 301 D 1 
HETATM 26 C CMC HEM . . . N 2 8.532 -19.871 -23.129 1 74.2 ? CMC HEM 301 D 1 
HETATM 27 C CAC HEM . . . N 2 8.122 -16.534 -22.739 1 62.65 ? CAC HEM 301 D 1 
HETATM 28 C CBC HEM . . . N 2 6.877 -16.999 -22.882 1 68.88 ? CBC HEM 301 D 1 
HETATM 29 C C1D HEM . . . N 2 12.218 -14.925 -21.983 1 70 ? C1D HEM 301 D 1 
HETATM 30 C C2D HEM . . . N 2 12.493 -13.502 -21.915 1 72.38 ? C2D HEM 301 D 1 
HETATM 31 C C3D HEM . . . N 2 14.004 -13.373 -21.696 1 74.54 ? C3D HEM 301 D 1 
HETATM 32 C C4D HEM . . . N 2 14.495 -14.731 -21.661 1 76.97 ? C4D HEM 301 D 1 
HETATM 33 C CMD HEM . . . N 2 11.491 -12.34 -22.034 1 72.34 ? CMD HEM 301 D 1 
HETATM 34 C CAD HEM . . . N 2 14.826 -12.071 -21.566 1 77.88 ? CAD HEM 301 D 1 
HETATM 35 C CBD HEM . . . N 2 15.166 -11.763 -20.109 1 81.01 ? CBD HEM 301 D 1 
HETATM 36 C CGD HEM . . . N 2 16.207 -10.664 -20.049 1 88.24 ? CGD HEM 301 D 1 
HETATM 37 O O1D HEM . . . N 2 17.279 -10.789 -20.706 1 82.64 ? O1D HEM 301 D 1 
HETATM 38 O O2D HEM . . . N 2 15.975 -9.656 -19.33 1 92.55 ? O2D HEM 301 D 1 
HETATM 39 N NA HEM . . . N 2 15.595 -17.532 -21.467 1 79.67 ? NA HEM 301 D 1 
HETATM 40 N NB HEM . . . N 2 13.761 -19.717 -21.903 1 71 ? NB HEM 301 D 1 
HETATM 41 N NC HEM . . . N 2 11.634 -17.859 -22.38 1 63.46 ? NC HEM 301 D 1 
HETATM 42 N ND HEM . . . N 2 13.423 -15.61 -21.828 1 73.87 ? ND HEM 301 D 1 
HETATM 43 FE FE HEM . . . N 2 13.572 -17.68 -21.845 1 76.41 ? FE HEM 301 D 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#