data_4M06
#
_model_server_result.job_id            RVKHwGiTjunV3gnsh1HNZw 
_model_server_result.datetime_utc      '2025-03-01 00:26:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m06 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":302}' 
#
_entry.id    4M06 
#
_exptl.entry_id    4M06 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.94 
_cell.angle_gamma         90 
_cell.entry_id            4M06 
_cell.length_a            136.21 
_cell.length_b            113.42 
_cell.length_c            118.84 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M06 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 182 A HIS 160 1_555 F FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc2 B NE2 HIS 182 B HIS 160 1_555 I FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? 
metalc ? metalc3 C NE2 HIS 182 C HIS 160 1_555 K FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc4 D NE2 HIS 182 D HIS 160 1_555 N FE HEM . D HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc5 E NE2 HIS 182 E HIS 160 1_555 P FE HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 126 n n 
C1 C2 GOL sing 127 n n 
C1 H11 GOL sing 128 n n 
C1 H12 GOL sing 129 n n 
O1 HO1 GOL sing 130 n n 
C2 O2 GOL sing 131 n n 
C2 C3 GOL sing 132 n n 
C2 H2 GOL sing 133 n n 
O2 HO2 GOL sing 134 n n 
C3 O3 GOL sing 135 n n 
C3 H31 GOL sing 136 n n 
C3 H32 GOL sing 137 n n 
O3 HO3 GOL sing 138 n n 
#
_atom_sites.entry_id                     4M06 
_atom_sites.fract_transf_matrix[1][1]    0.007342 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003894 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008817 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 HEM A 1 301 239 HEM HEM . 
G 3 GOL A 1 302 1 GOL GOL . 
H 4 CYN A 1 303 1 CYN CYN . 
I 2 HEM B 1 301 239 HEM HEM . 
J 4 CYN B 1 302 1 CYN CYN . 
K 2 HEM C 1 301 239 HEM HEM . 
L 4 CYN C 1 302 1 CYN CYN . 
M 5 EDO C 1 303 1 EDO EDO . 
N 2 HEM D 1 301 239 HEM HEM . 
O 4 CYN D 1 302 1 CYN CYN . 
P 2 HEM E 1 301 239 HEM HEM . 
Q 4 CYN E 1 302 1 CYN CYN . 
R 5 EDO E 1 303 1 EDO EDO . 
S 6 HOH A 1 401 1 HOH HOH . 
T 6 HOH C 1 401 2 HOH HOH . 
T 6 HOH C 2 402 3 HOH HOH . 
T 6 HOH C 3 403 5 HOH HOH . 
U 6 HOH E 1 401 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 3 -14.363 2.735 -16.681 1 100.88 ? C1 GOL 302 A 1 
HETATM 2 O O1 GOL . . . G 3 -13.253 2.286 -17.428 1 91.62 ? O1 GOL 302 A 1 
HETATM 3 C C2 GOL . . . G 3 -14.438 4.26 -16.634 1 112.14 ? C2 GOL 302 A 1 
HETATM 4 O O2 GOL . . . G 3 -15.398 4.634 -15.673 1 120.56 ? O2 GOL 302 A 1 
HETATM 5 C C3 GOL . . . G 3 -13.104 4.913 -16.273 1 108.89 ? C3 GOL 302 A 1 
HETATM 6 O O3 GOL . . . G 3 -12.795 5.903 -17.233 1 97.74 ? O3 GOL 302 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#