data_4M07
#
_model_server_result.job_id            YACY8KznJHaqMimEWTr-Gg 
_model_server_result.datetime_utc      '2024-11-05 06:44:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m07 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":303}' 
#
_entry.id    4M07 
#
_exptl.entry_id    4M07 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.49 
_cell.angle_gamma         90 
_cell.entry_id            4M07 
_cell.length_a            138.29 
_cell.length_b            112.61 
_cell.length_c            120.32 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M07 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 M N N 
? 4 Q N N 
? 4 R N N 
? 4 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 182 A HIS 160 1_555 F FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc2 B NE2 HIS 182 B HIS 160 1_555 K FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? 
metalc ? metalc3 C NE2 HIS 182 C HIS 160 1_555 P FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
metalc ? metalc4 D NE2 HIS 182 D HIS 160 1_555 T FE HEM . D HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? 
metalc ? metalc5 E NE2 HIS 182 E HIS 160 1_555 Y FE HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 125 n n 
C1 C2 GOL sing 126 n n 
C1 H11 GOL sing 127 n n 
C1 H12 GOL sing 128 n n 
O1 HO1 GOL sing 129 n n 
C2 O2 GOL sing 130 n n 
C2 C3 GOL sing 131 n n 
C2 H2 GOL sing 132 n n 
O2 HO2 GOL sing 133 n n 
C3 O3 GOL sing 134 n n 
C3 H31 GOL sing 135 n n 
C3 H32 GOL sing 136 n n 
O3 HO3 GOL sing 137 n n 
#
_atom_sites.entry_id                     4M07 
_atom_sites.fract_transf_matrix[1][1]    0.007231 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003925 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00888 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009456 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 HEM A 1 301 239 HEM HEM . 
G 3 EDO A 1 302 1 EDO EDO . 
H 4 GOL A 1 303 1 GOL GOL . 
I 4 GOL A 1 304 1 GOL GOL . 
J 3 EDO A 1 305 1 EDO EDO . 
K 2 HEM B 1 301 239 HEM HEM . 
L 3 EDO B 1 302 1 EDO EDO . 
M 4 GOL B 1 303 1 GOL GOL . 
N 3 EDO B 1 304 1 EDO EDO . 
O 3 EDO B 1 305 1 EDO EDO . 
P 2 HEM C 1 301 239 HEM HEM . 
Q 4 GOL C 1 302 1 GOL GOL . 
R 4 GOL C 1 303 1 GOL GOL . 
S 3 EDO C 1 304 1 EDO EDO . 
T 2 HEM D 1 301 239 HEM HEM . 
U 4 GOL D 1 302 1 GOL GOL . 
V 3 EDO D 1 303 1 EDO EDO . 
W 3 EDO D 1 304 1 EDO EDO . 
X 3 EDO D 1 305 1 EDO EDO . 
Y 2 HEM E 1 301 239 HEM HEM . 
Z 3 EDO E 1 302 1 EDO EDO . 
AA 5 HOH A 1 401 9 HOH HOH . 
AA 5 HOH A 2 402 13 HOH HOH . 
AA 5 HOH A 3 403 36 HOH HOH . 
AA 5 HOH A 4 404 40 HOH HOH . 
AA 5 HOH A 5 405 47 HOH HOH . 
AA 5 HOH A 6 406 58 HOH HOH . 
AA 5 HOH A 7 407 62 HOH HOH . 
AA 5 HOH A 8 408 64 HOH HOH . 
BA 5 HOH B 1 401 7 HOH HOH . 
BA 5 HOH B 2 402 29 HOH HOH . 
BA 5 HOH B 3 403 43 HOH HOH . 
BA 5 HOH B 4 404 49 HOH HOH . 
BA 5 HOH B 5 405 59 HOH HOH . 
BA 5 HOH B 6 406 67 HOH HOH . 
CA 5 HOH C 1 401 3 HOH HOH . 
CA 5 HOH C 2 402 11 HOH HOH . 
CA 5 HOH C 3 403 12 HOH HOH . 
CA 5 HOH C 4 404 37 HOH HOH . 
CA 5 HOH C 5 405 39 HOH HOH . 
CA 5 HOH C 6 406 44 HOH HOH . 
CA 5 HOH C 7 407 48 HOH HOH . 
CA 5 HOH C 8 408 53 HOH HOH . 
CA 5 HOH C 9 409 55 HOH HOH . 
CA 5 HOH C 10 410 56 HOH HOH . 
CA 5 HOH C 11 411 65 HOH HOH . 
CA 5 HOH C 12 412 66 HOH HOH . 
CA 5 HOH C 13 413 70 HOH HOH . 
DA 5 HOH D 1 401 14 HOH HOH . 
DA 5 HOH D 2 402 23 HOH HOH . 
DA 5 HOH D 3 403 24 HOH HOH . 
DA 5 HOH D 4 404 25 HOH HOH . 
DA 5 HOH D 5 405 26 HOH HOH . 
DA 5 HOH D 6 406 42 HOH HOH . 
DA 5 HOH D 7 407 45 HOH HOH . 
DA 5 HOH D 8 408 46 HOH HOH . 
DA 5 HOH D 9 409 52 HOH HOH . 
DA 5 HOH D 10 410 57 HOH HOH . 
DA 5 HOH D 11 411 68 HOH HOH . 
DA 5 HOH D 12 412 69 HOH HOH . 
DA 5 HOH D 13 413 71 HOH HOH . 
DA 5 HOH D 14 414 72 HOH HOH . 
DA 5 HOH D 15 415 73 HOH HOH . 
DA 5 HOH D 16 416 74 HOH HOH . 
DA 5 HOH D 17 417 75 HOH HOH . 
EA 5 HOH E 1 401 10 HOH HOH . 
EA 5 HOH E 2 402 50 HOH HOH . 
EA 5 HOH E 3 403 63 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 4 3.411 8.864 19.668 1 113.64 ? C1 GOL 303 A 1 
HETATM 2 O O1 GOL . . . H 4 3.128 10.243 19.653 1 104.72 ? O1 GOL 303 A 1 
HETATM 3 C C2 GOL . . . H 4 4.852 8.628 19.231 1 121.91 ? C2 GOL 303 A 1 
HETATM 4 O O2 GOL . . . H 4 5.536 9.863 19.159 1 123.58 ? O2 GOL 303 A 1 
HETATM 5 C C3 GOL . . . H 4 5.533 7.682 20.22 1 108.16 ? C3 GOL 303 A 1 
HETATM 6 O O3 GOL . . . H 4 6.682 7.105 19.641 1 98.41 ? O3 GOL 303 A 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           224 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#