data_4M08
#
_model_server_result.job_id            4a_y8TZUBxSMhTYIm71CTQ 
_model_server_result.datetime_utc      '2024-11-23 18:47:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m08 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":306}' 
#
_entry.id    4M08 
#
_exptl.entry_id    4M08 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              69.085 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            IMIDAZOLE 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4M08 
_cell.length_a            145.83 
_cell.length_b            145.83 
_cell.length_c            137.225 
_cell.Z_PDB               30 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M08 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 L N N 
? 4 W N N 
? 4 DA N N 
? 4 OA N N 
? 4 UA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 163 A HIS 160 1_555 F FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc2 F FE HEM . A HEM 301 1_555 L N3 IMD . A IMD 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? 
metalc ? metalc3 B NE2 HIS 163 B HIS 160 1_555 Q FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc4 Q FE HEM . B HEM 301 1_555 W N3 IMD . B IMD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc5 C NE2 HIS 163 C HIS 160 1_555 AA FE HEM . C HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc6 AA FE HEM . C HEM 302 1_555 DA N3 IMD . C IMD 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc7 D NE2 HIS 163 D HIS 160 1_555 LA FE HEM . D HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.498 ? 
metalc ? metalc8 LA FE HEM . D HEM 301 1_555 OA N1 IMD . D IMD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc9 E NE2 HIS 163 E HIS 160 1_555 RA FE HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc10 RA FE HEM . E HEM 301 1_555 UA N1 IMD . E IMD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
#
_chem_comp.formula           'C3 H5 N2 1' 
_chem_comp.formula_weight    69.085 
_chem_comp.id                IMD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              IMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 IMD sing 251 n y 
N1 C5 IMD sing 252 n y 
N1 HN1 IMD sing 253 n n 
C2 N3 IMD doub 254 n y 
C2 H2 IMD sing 255 n n 
N3 C4 IMD sing 256 n y 
N3 HN3 IMD sing 257 n n 
C4 C5 IMD doub 258 n y 
C4 H4 IMD sing 259 n n 
C5 H5 IMD sing 260 n n 
#
_atom_sites.entry_id                     4M08 
_atom_sites.fract_transf_matrix[1][1]    0.006857 
_atom_sites.fract_transf_matrix[1][2]    0.003959 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007918 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007287 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 HEM A 1 301 301 HEM HEM . 
G 3 SO4 A 1 302 302 SO4 SO4 . 
H 3 SO4 A 1 303 303 SO4 SO4 . 
I 3 SO4 A 1 304 304 SO4 SO4 . 
J 3 SO4 A 1 305 305 SO4 SO4 . 
K 3 SO4 A 1 311 305 SO4 SO4 . 
L 4 IMD A 1 306 307 IMD IMD . 
M 5 EDO A 1 307 308 EDO EDO . 
N 3 SO4 A 1 308 309 SO4 SO4 . 
O 3 SO4 A 1 309 310 SO4 SO4 . 
P 5 EDO A 1 310 313 EDO EDO . 
Q 2 HEM B 1 301 301 HEM HEM . 
R 3 SO4 B 1 302 302 SO4 SO4 . 
S 3 SO4 B 1 309 302 SO4 SO4 . 
T 3 SO4 B 1 303 303 SO4 SO4 . 
U 5 EDO B 1 304 308 EDO EDO . 
V 5 EDO B 1 310 1 EDO EDO . 
W 4 IMD B 1 305 309 IMD IMD . 
X 5 EDO B 1 306 310 EDO EDO . 
Y 5 EDO B 1 307 311 EDO EDO . 
Z 3 SO4 B 1 308 312 SO4 SO4 . 
AA 2 HEM C 1 302 301 HEM HEM . 
BA 3 SO4 C 1 303 303 SO4 SO4 . 
CA 3 SO4 C 1 304 304 SO4 SO4 . 
DA 4 IMD C 1 305 306 IMD IMD . 
EA 3 SO4 C 1 306 308 SO4 SO4 . 
FA 3 SO4 C 1 307 309 SO4 SO4 . 
GA 3 SO4 C 1 308 310 SO4 SO4 . 
HA 3 SO4 C 1 309 312 SO4 SO4 . 
IA 5 EDO C 1 301 314 EDO EDO . 
JA 5 EDO C 1 310 314 EDO EDO . 
KA 3 SO4 D 1 305 307 SO4 SO4 . 
LA 2 HEM D 1 301 301 HEM HEM . 
MA 3 SO4 D 1 302 302 SO4 SO4 . 
NA 3 SO4 D 1 303 303 SO4 SO4 . 
OA 4 IMD D 1 304 305 IMD IMD . 
PA 5 EDO E 1 305 1 EDO EDO . 
QA 5 EDO E 1 306 1 EDO EDO . 
RA 2 HEM E 1 301 301 HEM HEM . 
SA 3 SO4 E 1 302 302 SO4 SO4 . 
TA 3 SO4 E 1 303 303 SO4 SO4 . 
UA 4 IMD E 1 304 306 IMD IMD . 
VA 6 HOH A 1 401 401 HOH HOH . 
VA 6 HOH A 2 402 402 HOH HOH . 
VA 6 HOH A 3 403 403 HOH HOH . 
VA 6 HOH A 4 404 404 HOH HOH . 
VA 6 HOH A 5 405 405 HOH HOH . 
VA 6 HOH A 6 406 406 HOH HOH . 
VA 6 HOH A 7 407 407 HOH HOH . 
VA 6 HOH A 8 408 410 HOH HOH . 
VA 6 HOH A 9 409 411 HOH HOH . 
VA 6 HOH A 10 410 412 HOH HOH . 
VA 6 HOH A 11 411 413 HOH HOH . 
VA 6 HOH A 12 412 414 HOH HOH . 
VA 6 HOH A 13 413 415 HOH HOH . 
VA 6 HOH A 14 414 418 HOH HOH . 
VA 6 HOH A 15 415 419 HOH HOH . 
VA 6 HOH A 16 416 420 HOH HOH . 
VA 6 HOH A 17 417 423 HOH HOH . 
VA 6 HOH A 18 418 424 HOH HOH . 
VA 6 HOH A 19 419 425 HOH HOH . 
VA 6 HOH A 20 420 428 HOH HOH . 
VA 6 HOH A 21 421 429 HOH HOH . 
VA 6 HOH A 22 422 430 HOH HOH . 
VA 6 HOH A 23 423 414 HOH HOH . 
VA 6 HOH A 24 424 6 HOH HOH . 
VA 6 HOH A 25 425 9 HOH HOH . 
VA 6 HOH A 26 426 18 HOH HOH . 
VA 6 HOH A 27 427 19 HOH HOH . 
WA 6 HOH B 1 401 401 HOH HOH . 
WA 6 HOH B 2 402 403 HOH HOH . 
WA 6 HOH B 3 403 404 HOH HOH . 
WA 6 HOH B 4 404 405 HOH HOH . 
WA 6 HOH B 5 405 406 HOH HOH . 
WA 6 HOH B 6 406 407 HOH HOH . 
WA 6 HOH B 7 407 408 HOH HOH . 
WA 6 HOH B 8 408 409 HOH HOH . 
WA 6 HOH B 9 409 410 HOH HOH . 
WA 6 HOH B 10 410 412 HOH HOH . 
WA 6 HOH B 11 411 413 HOH HOH . 
WA 6 HOH B 12 412 416 HOH HOH . 
WA 6 HOH B 13 413 417 HOH HOH . 
WA 6 HOH B 14 414 418 HOH HOH . 
WA 6 HOH B 15 415 419 HOH HOH . 
WA 6 HOH B 16 416 420 HOH HOH . 
WA 6 HOH B 17 417 421 HOH HOH . 
WA 6 HOH B 18 418 422 HOH HOH . 
WA 6 HOH B 19 419 423 HOH HOH . 
WA 6 HOH B 20 420 425 HOH HOH . 
WA 6 HOH B 21 421 426 HOH HOH . 
WA 6 HOH B 22 422 427 HOH HOH . 
WA 6 HOH B 23 423 405 HOH HOH . 
WA 6 HOH B 24 424 419 HOH HOH . 
WA 6 HOH B 25 425 1 HOH HOH . 
WA 6 HOH B 26 426 2 HOH HOH . 
WA 6 HOH B 27 427 3 HOH HOH . 
WA 6 HOH B 28 428 4 HOH HOH . 
WA 6 HOH B 29 429 12 HOH HOH . 
WA 6 HOH B 30 430 13 HOH HOH . 
WA 6 HOH B 31 431 14 HOH HOH . 
XA 6 HOH C 1 401 401 HOH HOH . 
XA 6 HOH C 2 402 402 HOH HOH . 
XA 6 HOH C 3 403 403 HOH HOH . 
XA 6 HOH C 4 404 404 HOH HOH . 
XA 6 HOH C 5 405 406 HOH HOH . 
XA 6 HOH C 6 406 407 HOH HOH . 
XA 6 HOH C 7 407 409 HOH HOH . 
XA 6 HOH C 8 408 410 HOH HOH . 
XA 6 HOH C 9 409 411 HOH HOH . 
XA 6 HOH C 10 410 412 HOH HOH . 
XA 6 HOH C 11 411 413 HOH HOH . 
XA 6 HOH C 12 412 415 HOH HOH . 
XA 6 HOH C 13 413 416 HOH HOH . 
XA 6 HOH C 14 414 417 HOH HOH . 
XA 6 HOH C 15 415 420 HOH HOH . 
XA 6 HOH C 16 416 421 HOH HOH . 
XA 6 HOH C 17 417 422 HOH HOH . 
XA 6 HOH C 18 418 424 HOH HOH . 
XA 6 HOH C 19 419 425 HOH HOH . 
XA 6 HOH C 20 420 426 HOH HOH . 
XA 6 HOH C 21 421 427 HOH HOH . 
XA 6 HOH C 22 422 428 HOH HOH . 
XA 6 HOH C 23 423 430 HOH HOH . 
XA 6 HOH C 24 424 431 HOH HOH . 
XA 6 HOH C 25 425 432 HOH HOH . 
XA 6 HOH C 26 426 433 HOH HOH . 
XA 6 HOH C 27 427 434 HOH HOH . 
XA 6 HOH C 28 428 435 HOH HOH . 
XA 6 HOH C 29 429 438 HOH HOH . 
XA 6 HOH C 30 430 440 HOH HOH . 
XA 6 HOH C 31 431 442 HOH HOH . 
XA 6 HOH C 32 432 443 HOH HOH . 
XA 6 HOH C 33 433 444 HOH HOH . 
XA 6 HOH C 34 434 445 HOH HOH . 
XA 6 HOH C 35 435 446 HOH HOH . 
XA 6 HOH C 36 436 447 HOH HOH . 
XA 6 HOH C 37 437 448 HOH HOH . 
XA 6 HOH C 38 438 450 HOH HOH . 
XA 6 HOH C 39 439 16 HOH HOH . 
XA 6 HOH C 40 440 17 HOH HOH . 
YA 6 HOH D 1 401 401 HOH HOH . 
YA 6 HOH D 2 402 402 HOH HOH . 
YA 6 HOH D 3 403 403 HOH HOH . 
YA 6 HOH D 4 404 404 HOH HOH . 
YA 6 HOH D 5 405 409 HOH HOH . 
YA 6 HOH D 6 406 410 HOH HOH . 
YA 6 HOH D 7 407 412 HOH HOH . 
YA 6 HOH D 8 408 15 HOH HOH . 
ZA 6 HOH E 1 401 402 HOH HOH . 
ZA 6 HOH E 2 402 403 HOH HOH . 
ZA 6 HOH E 3 403 404 HOH HOH . 
ZA 6 HOH E 4 404 405 HOH HOH . 
ZA 6 HOH E 5 405 406 HOH HOH . 
ZA 6 HOH E 6 406 410 HOH HOH . 
ZA 6 HOH E 7 407 412 HOH HOH . 
ZA 6 HOH E 8 408 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 IMD . . . L 4 -40.13 34.095 30.323 1 53.3 ? N1 IMD 306 A 1 
HETATM 2 C C2 IMD . . . L 4 -39.425 32.995 30.663 1 36.22 ? C2 IMD 306 A 1 
HETATM 3 N N3 IMD . . . L 4 -39.012 32.382 29.527 1 29.01 ? N3 IMD 306 A 1 
HETATM 4 C C4 IMD . . . L 4 -39.455 33.09 28.468 1 36.44 ? C4 IMD 306 A 1 
HETATM 5 C C5 IMD . . . L 4 -40.159 34.174 28.974 1 48.71 ? C5 IMD 306 A 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           5 
#