data_4M09
#
_model_server_result.job_id            -D-7QoXSKJ-gZ2IDMRIHfQ 
_model_server_result.datetime_utc      '2024-11-13 07:04:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4m09 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":304}' 
#
_entry.id    4M09 
#
_exptl.entry_id    4M09 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          118.08 
_cell.angle_gamma         90 
_cell.entry_id            4M09 
_cell.length_a            138.1 
_cell.length_b            114.98 
_cell.length_c            118.87 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4M09 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 N N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 Y N N 
? 4 AA N N 
? 4 BA N N 
? 4 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 163 A HIS 160 1_555 F FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc2 B NE2 HIS 163 B HIS 160 1_555 K FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc3 C NE2 HIS 163 C HIS 160 1_555 O FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc4 D NE2 HIS 163 D HIS 160 1_555 U FE HEM . D HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? 
metalc ? metalc5 U FE HEM . D HEM 301 1_555 V N3 IMD . D IMD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? 
metalc ? metalc6 E NE2 HIS 163 E HIS 160 1_555 Z FE HEM . E HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 70 n n 
C1 C2 EDO sing 71 n n 
C1 H11 EDO sing 72 n n 
C1 H12 EDO sing 73 n n 
O1 HO1 EDO sing 74 n n 
C2 O2 EDO sing 75 n n 
C2 H21 EDO sing 76 n n 
C2 H22 EDO sing 77 n n 
O2 HO2 EDO sing 78 n n 
#
_atom_sites.entry_id                     4M09 
_atom_sites.fract_transf_matrix[1][1]    0.007241 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003863 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008697 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009535 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 HEM A 1 301 239 HEM HEM . 
G 3 SO4 A 1 302 3 SO4 SO4 . 
H 4 EDO A 1 303 7 EDO EDO . 
I 5 IMD A 1 304 8 IMD IMD . 
J 3 SO4 A 1 305 11 SO4 SO4 . 
K 2 HEM B 1 301 239 HEM HEM . 
L 3 SO4 B 1 302 2 SO4 SO4 . 
M 3 SO4 B 1 303 15 SO4 SO4 . 
N 4 EDO B 1 304 19 EDO EDO . 
O 2 HEM C 1 301 239 HEM HEM . 
P 3 SO4 C 1 302 4 SO4 SO4 . 
Q 3 SO4 C 1 303 13 SO4 SO4 . 
R 4 EDO C 1 304 17 EDO EDO . 
S 4 EDO C 1 305 21 EDO EDO . 
T 4 EDO C 1 306 22 EDO EDO . 
U 2 HEM D 1 301 239 HEM HEM . 
V 5 IMD D 1 302 5 IMD IMD . 
W 3 SO4 D 1 303 12 SO4 SO4 . 
X 3 SO4 D 1 304 14 SO4 SO4 . 
Y 4 EDO D 1 305 18 EDO EDO . 
Z 2 HEM E 1 301 239 HEM HEM . 
AA 4 EDO E 1 302 6 EDO EDO . 
BA 4 EDO E 1 303 16 EDO EDO . 
CA 4 EDO E 1 304 20 EDO EDO . 
DA 3 SO4 E 1 305 1 SO4 SO4 . 
EA 6 HOH A 1 401 15 HOH HOH . 
EA 6 HOH A 2 402 21 HOH HOH . 
EA 6 HOH A 3 403 31 HOH HOH . 
EA 6 HOH A 4 404 32 HOH HOH . 
EA 6 HOH A 5 405 38 HOH HOH . 
EA 6 HOH A 6 406 39 HOH HOH . 
EA 6 HOH A 7 407 40 HOH HOH . 
EA 6 HOH A 8 408 42 HOH HOH . 
EA 6 HOH A 9 409 43 HOH HOH . 
EA 6 HOH A 10 410 46 HOH HOH . 
EA 6 HOH A 11 411 54 HOH HOH . 
EA 6 HOH A 12 412 56 HOH HOH . 
EA 6 HOH A 13 413 59 HOH HOH . 
EA 6 HOH A 14 414 70 HOH HOH . 
EA 6 HOH A 15 415 71 HOH HOH . 
EA 6 HOH A 16 416 75 HOH HOH . 
EA 6 HOH A 17 417 77 HOH HOH . 
EA 6 HOH A 18 418 84 HOH HOH . 
EA 6 HOH A 19 419 93 HOH HOH . 
EA 6 HOH A 20 420 97 HOH HOH . 
EA 6 HOH A 21 421 101 HOH HOH . 
EA 6 HOH A 22 422 103 HOH HOH . 
EA 6 HOH A 23 423 109 HOH HOH . 
EA 6 HOH A 24 424 112 HOH HOH . 
EA 6 HOH A 25 425 115 HOH HOH . 
EA 6 HOH A 26 426 116 HOH HOH . 
EA 6 HOH A 27 427 122 HOH HOH . 
EA 6 HOH A 28 428 126 HOH HOH . 
EA 6 HOH A 29 429 130 HOH HOH . 
EA 6 HOH A 30 430 131 HOH HOH . 
EA 6 HOH A 31 431 135 HOH HOH . 
EA 6 HOH A 32 432 138 HOH HOH . 
EA 6 HOH A 33 433 141 HOH HOH . 
EA 6 HOH A 34 434 143 HOH HOH . 
EA 6 HOH A 35 435 163 HOH HOH . 
EA 6 HOH A 36 436 166 HOH HOH . 
EA 6 HOH A 37 437 175 HOH HOH . 
EA 6 HOH A 38 438 182 HOH HOH . 
FA 6 HOH B 1 401 3 HOH HOH . 
FA 6 HOH B 2 402 7 HOH HOH . 
FA 6 HOH B 3 403 9 HOH HOH . 
FA 6 HOH B 4 404 11 HOH HOH . 
FA 6 HOH B 5 405 18 HOH HOH . 
FA 6 HOH B 6 406 20 HOH HOH . 
FA 6 HOH B 7 407 23 HOH HOH . 
FA 6 HOH B 8 408 28 HOH HOH . 
FA 6 HOH B 9 409 36 HOH HOH . 
FA 6 HOH B 10 410 47 HOH HOH . 
FA 6 HOH B 11 411 52 HOH HOH . 
FA 6 HOH B 12 412 55 HOH HOH . 
FA 6 HOH B 13 413 68 HOH HOH . 
FA 6 HOH B 14 414 69 HOH HOH . 
FA 6 HOH B 15 415 73 HOH HOH . 
FA 6 HOH B 16 416 80 HOH HOH . 
FA 6 HOH B 17 417 86 HOH HOH . 
FA 6 HOH B 18 418 87 HOH HOH . 
FA 6 HOH B 19 419 88 HOH HOH . 
FA 6 HOH B 20 420 98 HOH HOH . 
FA 6 HOH B 21 421 99 HOH HOH . 
FA 6 HOH B 22 422 102 HOH HOH . 
FA 6 HOH B 23 423 104 HOH HOH . 
FA 6 HOH B 24 424 107 HOH HOH . 
FA 6 HOH B 25 425 113 HOH HOH . 
FA 6 HOH B 26 426 114 HOH HOH . 
FA 6 HOH B 27 427 121 HOH HOH . 
FA 6 HOH B 28 428 125 HOH HOH . 
FA 6 HOH B 29 429 132 HOH HOH . 
FA 6 HOH B 30 430 136 HOH HOH . 
FA 6 HOH B 31 431 146 HOH HOH . 
FA 6 HOH B 32 432 147 HOH HOH . 
FA 6 HOH B 33 433 151 HOH HOH . 
FA 6 HOH B 34 434 153 HOH HOH . 
FA 6 HOH B 35 435 158 HOH HOH . 
FA 6 HOH B 36 436 174 HOH HOH . 
FA 6 HOH B 37 437 183 HOH HOH . 
FA 6 HOH B 38 438 184 HOH HOH . 
GA 6 HOH C 1 401 1 HOH HOH . 
GA 6 HOH C 2 402 2 HOH HOH . 
GA 6 HOH C 3 403 14 HOH HOH . 
GA 6 HOH C 4 404 16 HOH HOH . 
GA 6 HOH C 5 405 17 HOH HOH . 
GA 6 HOH C 6 406 44 HOH HOH . 
GA 6 HOH C 7 407 49 HOH HOH . 
GA 6 HOH C 8 408 58 HOH HOH . 
GA 6 HOH C 9 409 60 HOH HOH . 
GA 6 HOH C 10 410 62 HOH HOH . 
GA 6 HOH C 11 411 63 HOH HOH . 
GA 6 HOH C 12 412 81 HOH HOH . 
GA 6 HOH C 13 413 83 HOH HOH . 
GA 6 HOH C 14 414 85 HOH HOH . 
GA 6 HOH C 15 415 91 HOH HOH . 
GA 6 HOH C 16 416 92 HOH HOH . 
GA 6 HOH C 17 417 94 HOH HOH . 
GA 6 HOH C 18 418 100 HOH HOH . 
GA 6 HOH C 19 419 105 HOH HOH . 
GA 6 HOH C 20 420 118 HOH HOH . 
GA 6 HOH C 21 421 133 HOH HOH . 
GA 6 HOH C 22 422 134 HOH HOH . 
GA 6 HOH C 23 423 139 HOH HOH . 
GA 6 HOH C 24 424 140 HOH HOH . 
GA 6 HOH C 25 425 142 HOH HOH . 
GA 6 HOH C 26 426 145 HOH HOH . 
GA 6 HOH C 27 427 152 HOH HOH . 
GA 6 HOH C 28 428 160 HOH HOH . 
GA 6 HOH C 29 429 162 HOH HOH . 
GA 6 HOH C 30 430 165 HOH HOH . 
GA 6 HOH C 31 431 168 HOH HOH . 
GA 6 HOH C 32 432 169 HOH HOH . 
GA 6 HOH C 33 433 170 HOH HOH . 
GA 6 HOH C 34 434 173 HOH HOH . 
GA 6 HOH C 35 435 178 HOH HOH . 
GA 6 HOH C 36 436 179 HOH HOH . 
HA 6 HOH D 1 401 6 HOH HOH . 
HA 6 HOH D 2 402 13 HOH HOH . 
HA 6 HOH D 3 403 19 HOH HOH . 
HA 6 HOH D 4 404 25 HOH HOH . 
HA 6 HOH D 5 405 27 HOH HOH . 
HA 6 HOH D 6 406 29 HOH HOH . 
HA 6 HOH D 7 407 30 HOH HOH . 
HA 6 HOH D 8 408 34 HOH HOH . 
HA 6 HOH D 9 409 37 HOH HOH . 
HA 6 HOH D 10 410 45 HOH HOH . 
HA 6 HOH D 11 411 48 HOH HOH . 
HA 6 HOH D 12 412 50 HOH HOH . 
HA 6 HOH D 13 413 51 HOH HOH . 
HA 6 HOH D 14 414 65 HOH HOH . 
HA 6 HOH D 15 415 67 HOH HOH . 
HA 6 HOH D 16 416 72 HOH HOH . 
HA 6 HOH D 17 417 78 HOH HOH . 
HA 6 HOH D 18 418 82 HOH HOH . 
HA 6 HOH D 19 419 95 HOH HOH . 
HA 6 HOH D 20 420 96 HOH HOH . 
HA 6 HOH D 21 421 120 HOH HOH . 
HA 6 HOH D 22 422 137 HOH HOH . 
HA 6 HOH D 23 423 148 HOH HOH . 
HA 6 HOH D 24 424 159 HOH HOH . 
HA 6 HOH D 25 425 171 HOH HOH . 
HA 6 HOH D 26 426 181 HOH HOH . 
HA 6 HOH D 27 427 185 HOH HOH . 
IA 6 HOH E 1 401 4 HOH HOH . 
IA 6 HOH E 2 402 5 HOH HOH . 
IA 6 HOH E 3 403 8 HOH HOH . 
IA 6 HOH E 4 404 10 HOH HOH . 
IA 6 HOH E 5 405 22 HOH HOH . 
IA 6 HOH E 6 406 26 HOH HOH . 
IA 6 HOH E 7 407 33 HOH HOH . 
IA 6 HOH E 8 408 35 HOH HOH . 
IA 6 HOH E 9 409 41 HOH HOH . 
IA 6 HOH E 10 410 53 HOH HOH . 
IA 6 HOH E 11 411 61 HOH HOH . 
IA 6 HOH E 12 412 64 HOH HOH . 
IA 6 HOH E 13 413 66 HOH HOH . 
IA 6 HOH E 14 414 74 HOH HOH . 
IA 6 HOH E 15 415 76 HOH HOH . 
IA 6 HOH E 16 416 79 HOH HOH . 
IA 6 HOH E 17 417 89 HOH HOH . 
IA 6 HOH E 18 418 90 HOH HOH . 
IA 6 HOH E 19 419 106 HOH HOH . 
IA 6 HOH E 20 420 111 HOH HOH . 
IA 6 HOH E 21 421 144 HOH HOH . 
IA 6 HOH E 22 422 155 HOH HOH . 
IA 6 HOH E 23 423 161 HOH HOH . 
IA 6 HOH E 24 424 177 HOH HOH . 
IA 6 HOH E 25 425 180 HOH HOH . 
IA 6 HOH E 26 426 186 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . CA 4 -31.678 19.896 12.703 1 61.34 ? C1 EDO 304 E 1 
HETATM 2 O O1 EDO . . . CA 4 -32.869 19.379 13.307 1 59.78 ? O1 EDO 304 E 1 
HETATM 3 C C2 EDO . . . CA 4 -32.023 21.098 11.832 1 67.21 ? C2 EDO 304 E 1 
HETATM 4 O O2 EDO . . . CA 4 -30.823 21.635 11.263 1 64.84 ? O2 EDO 304 E 1 
#
_model_server_stats.io_time_ms              33 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           298 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#