data_4M1M # _model_server_result.job_id 8wq0Pn2kbBAxeY-IizTk8g _model_server_result.datetime_utc '2024-11-30 06:42:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1306}' # _entry.id 4M1M # _exptl.entry_id 4M1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 200.59 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURY (II) ION' _entity.pdbx_number_of_molecules 13 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4M1M _cell.length_a 97.544 _cell.length_b 115.426 _cell.length_c 378.858 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I 1 1 B,J,K,L,M,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 184 A ASP 184 1_555 G HG HG . A HG 1305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc2 A NH1 ARG 272 A ARG 272 1_555 E HG HG . A HG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc3 A SG CYS 713 A CYS 713 1_555 C HG HG . A HG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc4 A OE1 GLN 769 A GLN 769 1_555 C HG HG . A HG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc5 A SG CYS 1070 A CYS 1070 1_555 D HG HG . A HG 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc6 A SG CYS 1121 A CYS 1121 1_555 E HG HG . A HG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc7 A OE1 GLU 1125 A GLU 1125 1_555 E HG HG . A HG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.152 ? metalc ? metalc8 A NE ARG 1218 A ARG 1218 1_555 F HG HG . A HG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc9 A NH1 ARG 1218 A ARG 1218 1_555 F HG HG . A HG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc10 A SG CYS 1223 A CYS 1223 1_555 F HG HG . A HG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc11 B NH2 ARG 272 B ARG 272 1_555 O HG HG . B HG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc12 B NH1 ARG 272 B ARG 272 1_555 O HG HG . B HG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.545 ? metalc ? metalc13 B SG CYS 427 B CYS 427 1_555 L HG HG . B HG 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.095 ? metalc ? metalc14 B SG CYS 713 B CYS 713 1_555 J HG HG . B HG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc15 B OE1 GLN 769 B GLN 769 1_555 J HG HG . B HG 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc16 B SG CYS 1121 B CYS 1121 1_555 O HG HG . B HG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc17 B OE2 GLU 1125 B GLU 1125 1_555 O HG HG . B HG 1306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.811 ? metalc ? metalc18 B NE ARG 1218 B ARG 1218 1_555 M HG HG . B HG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc19 B NH1 ARG 1218 B ARG 1218 1_555 M HG HG . B HG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc20 B SG CYS 1223 B CYS 1223 1_555 M HG HG . B HG 1304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? # _chem_comp.formula 'Hg 2' _chem_comp.formula_weight 200.59 _chem_comp.id HG _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURY (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4M1M _atom_sites.fract_transf_matrix[1][1] 0.010252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008664 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HG A 1 1301 1 HG HG . D 2 HG A 1 1302 4 HG HG . E 2 HG A 1 1303 8 HG HG . F 2 HG A 1 1304 10 HG HG . G 2 HG A 1 1305 11 HG HG . H 2 HG A 1 1306 12 HG HG . I 2 HG A 1 1307 13 HG HG . J 2 HG B 1 1301 2 HG HG . K 2 HG B 1 1302 3 HG HG . L 2 HG B 1 1303 5 HG HG . M 2 HG B 1 1304 6 HG HG . N 2 HG B 1 1305 7 HG HG . O 2 HG B 1 1306 9 HG HG . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol HG _atom_site.label_atom_id HG _atom_site.label_comp_id HG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.557 _atom_site.Cartn_y 88.101 _atom_site.Cartn_z 51.069 _atom_site.occupancy 0.16 _atom_site.B_iso_or_equiv 96.91 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id HG _atom_site.auth_comp_id HG _atom_site.auth_seq_id 1306 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #