data_4M1P # _model_server_result.job_id wLelDvDEn7KIST0AMf2ebQ _model_server_result.datetime_utc '2025-04-26 17:55:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4m1p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4M1P # _exptl.entry_id 4M1P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (I) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4M1P _cell.length_a 89.204 _cell.length_b 89.204 _cell.length_c 57.985 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4M1P _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dodecameric 12 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1,2,3,4 A,B,C,D,E 2 1,5,6,7,8,9,10,11,3,12,13,14 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 -44.602 77.25293 0 3 'crystal symmetry operation' 9_557 -x,-x+y,-z+2 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 115.97 4 'crystal symmetry operation' 12_567 x,x-y+1,-z+2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -44.602 77.25293 115.97 5 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 154.50586 0 6 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -133.806 77.25293 0 7 'crystal symmetry operation' 4_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 -89.204 154.50586 0 8 'crystal symmetry operation' 5_455 y-1,-x+y,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 -89.204 0 0 9 'crystal symmetry operation' 6_665 x-y+1,x+1,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 44.602 77.25293 0 10 'crystal symmetry operation' 7_467 y-1,x+1,-z+2 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 -133.806 77.25293 115.97 11 'crystal symmetry operation' 8_677 x-y+1,-y+2,-z+2 1 0 0 0 -1 0 0 0 -1 0 154.50586 115.97 12 'crystal symmetry operation' 10_667 -y+1,-x+1,-z+2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 44.602 77.25293 115.97 13 'crystal symmetry operation' 11_457 -x+y-1,y,-z+2 -1 0 0 0 1 0 0 0 -1 -89.204 0 115.97 14 'crystal symmetry operation' 12_577 x,x-y+2,-z+2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -89.204 154.50586 115.97 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 13 A THR 14 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.055 ? metalc ? metalc2 A ND1 HIS 74 A HIS 75 1_555 B CU CU1 . A CU1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc3 A SG CYS 78 A CYS 79 1_555 B CU CU1 . A CU1 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 A OG SER 87 A SER 88 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.719 ? metalc ? metalc5 A OE1 GLU 89 A GLU 90 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc6 A OE2 GLU 89 A GLU 90 1_555 C NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.765 ? metalc ? metalc7 A OE1 GLN 90 A GLN 91 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc8 A OG SER 91 A SER 92 1_555 D NA NA . A NA 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc9 C NA NA . A NA 202 1_555 E O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? # _chem_comp.formula 'Cu 1' _chem_comp.formula_weight 63.546 _chem_comp.id CU1 _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (I) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4M1P _atom_sites.fract_transf_matrix[1][1] 0.01121 _atom_sites.fract_transf_matrix[1][2] 0.006472 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017246 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU1 A 1 201 121 CU1 CU . C 3 NA A 1 202 131 NA NA . D 3 NA A 1 203 132 NA NA . E 4 HOH A 1 301 151 HOH HOH . E 4 HOH A 2 302 152 HOH HOH . E 4 HOH A 3 303 153 HOH HOH . E 4 HOH A 4 304 154 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU1 _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -33.753 _atom_site.Cartn_y 55.906 _atom_site.Cartn_z 69.999 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 58.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU1 _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 508 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 1 #